Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_06g0021690 | OGI:06077940 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr06:24855773-24857122 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gctcactcgcactcgctcgcgatatttctctcgcgcggcaaagaaagccaagAggagaggagacgagcgatcggggcggaggcgatgctgctgcggagcgcgtcgtcgccgctgctcggccacgccgcctgcgcgtcggcggcggccgcggcggcggagcatgtcggggcggtggtGgtggtggtgcccgtgtcgccGgcggcggcgaggcagcggggcccgccgctgtgccgcgcgacgtccgagggggacctgatggcggcggtgagtgcgcggccgcgggcgctgtccgtggcctcgtcggcgtccatctccgtcgaggaggaggttgaagaaGAGgaggaggaggaggaggaggaggatgtgctcggggcggccgtgccgctgcggcggctgctgacgagcaccgggctggacgcggacacGgggagggggagggaGggcgacgcggcggtcgtcgaggagggcgtcGggggaggaggcggcgggaggaaggtgtgcaacggcggcggcggcggcagcggggggaagggcgacggcggccgccgcgacgccgacgcgcactaccggcgtatgatccaggccgacccggcgaacccgctgctgctcggcaactacgcgaggttcctcaaggaggtggagggcgacgcggcgagggcgcaggagtactgcgagcgcgccatcgtcgccaaCcccggcgacggcgacgccctcgcgctctacgcgggcctcgtctgggagaccacccgcgacgccgaccgcgccgacgcctacttcacccgcgccgtccacgccgcccccgacgactggtgagcccacgcgccgccgccaccttctcaggcaattccttcttgatgatgtctcgcttctcctgcagctacgtcctcggctcctacgccggcttcctctgggacgccgaGgaagacgatgacgaccacggcggcgagcagccgccgccgccgttcatgggggcagctcagcctccttccatcacagcggcgtcttgagtgaacagatgctcttgatctctcgccgcctgtaaagaagacGaagcAacgaacacccgaggaggaatcacggcggcctctctccggcgaggcaccggccgtcgtcgacgtcgccggctcgccgggccggcgaccctcgccgtggctcgcagctgaatccggccacctgtaaaaatgaatctggagaagagcaccacgcagctaaggtgtagtcgatcttgtAaaatgagcctgcaaagCctacatgatgatcttgtttacttcttgtacatgtgtatcactgtatcagcaacgcttgtgaaataaataagccacagccaagtatgttctagctagatcagca
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| CDS seq | atgctgctgcggagcgcgtcgtcgccgctgctcggccacgccgcctgcgcgtcggcggcggccgcggcggcggagcatgtcggggcggtggtGgtggtggtgcccgtgtcgccGgcggcggcgaggcagcggggcccgccgctgtgccgcgcgacgtccgagggggacctgatggcggcggtgagtgcgcggccgcgggcgctgtccgtggcctcgtcggcgtccatctccgtcgaggaggaggttgaagaaGAGgaggaggaggaggaggaggaggatgtgctcggggcggccgtgccgctgcggcggctgctgacgagcaccgggctggacgcggacacGgggagggggagggaGggcgacgcggcggtcgtcgaggagggcgtcGggggaggaggcggcgggaggaaggtgtgcaacggcggcggcggcggcagcggggggaagggcgacggcggccgccgcgacgccgacgcgcactaccggcgtatgatccaggccgacccggcgaacccgctgctgctcggcaactacgcgaggttcctcaaggaggtggagggcgacgcggcgagggcgcaggagtactgcgagcgcgccatcgtcgccaaCcccggcgacggcgacgccctcgcgctctacgcgggcctcgtctgggagaccacccgcgacgccgaccgcgccgacgcctacttcacccgcgccgtccacgccgcccccgacgactgctacgtcctcggctcctacgccggcttcctctgggacgccgaGgaagacgatgacgaccacggcggcgagcagccgccgccgccgttcatgggggcagctcagcctccttccatcacagcggcgtcttga
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| Protein seq | MLLRSASSPLLGHAACASAAAAAAEHVGAVVVVVPVSPAAARQRGPPLCRATSEGDLMAAVSARPRALSVASSASISVEEEVEEEEEEEEEEDVLGAAVPLRRLLTSTGLDADTGRGREGDAAVVEEGVGGGGGGRKVCNGGGGGSGGKGDGGRRDADAHYRRMIQADPANPLLLGNYARFLKEVEGDAARAQEYCERAIVANPGDGDALALYAGLVWETTRDADRADAYFTRAVHAAPDDCYVLGSYAGFLWDAEEDDDDHGGEQPPPPFMGAAQPPSITAAS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0021690 | OsNaBo_06g0021690.01 | Chr06 | 24855773 | 24857122 | + | NAM | ||
| CDS seq | atgctgctgcggagcgcgtcgtcgccgctgctcggccacgccgcctgcgcgtcggcggcggccgcggcggcggagcatgtcggggcggtggtGgtggtggtgcccgtgtcgccGgcggcggcgaggcagcggggcccgccgctgtgccgcgcgacgtccgagggggacctgatggcggcggtgagtgcgcggccgcgggcgctgtccgtggcctcgtcggcgtccatctccgtcgaggaggaggttgaagaaGAGgaggaggaggaggaggaggaggatgtgctcggggcggccgtgccgctgcggcggctgctgacgagcaccgggctggacgcggacacGgggagggggagggaGggcgacgcggcggtcgtcgaggagggcgtcGggggaggaggcggcgggaggaaggtgtgcaacggcggcggcggcggcagcggggggaagggcgacggcggccgccgcgacgccgacgcgcactaccggcgtatgatccaggccgacccggcgaacccgctgctgctcggcaactacgcgaggttcctcaaggaggtggagggcgacgcggcgagggcgcaggagtactgcgagcgcgccatcgtcgccaaCcccggcgacggcgacgccctcgcgctctacgcgggcctcgtctgggagaccacccgcgacgccgaccgcgccgacgcctacttcacccgcgccgtccacgccgcccccgacgactgctacgtcctcggctcctacgccggcttcctctgggacgccgaGgaagacgatgacgaccacggcggcgagcagccgccgccgccgttcatgggggcagctcagcctccttccatcacagcggcgtcttga
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| Protein seq | MLLRSASSPLLGHAACASAAAAAAEHVGAVVVVVPVSPAAARQRGPPLCRATSEGDLMAAVSARPRALSVASSASISVEEEVEEEEEEEEEEDVLGAAVPLRRLLTSTGLDADTGRGREGDAAVVEEGVGGGGGGRKVCNGGGGGSGGKGDGGRRDADAHYRRMIQADPANPLLLGNYARFLKEVEGDAARAQEYCERAIVANPGDGDALALYAGLVWETTRDADRADAYFTRAVHAAPDDCYVLGSYAGFLWDAEEDDDDHGGEQPPPPFMGAAQPPSITAAS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0021690 | OsNaBo_06g0021690.02 | Chr06 | 24855777 | 24857113 | + | NAM | ||
| CDS seq | atgctgctgcggagcgcgtcgtcgccgctgctcggccacgccgcctgcgcgtcggcggcggccgcggcggcggagcatgtcggggcggtggtGgtggtggtgcccgtgtcgccGgcggcggcgaggcagcggggcccgccgctgtgccgcgcgacgtccgagggggacctgatggcggcggtgagtgcgcggccgcgggcgctgtccgtggcctcgtcggcgtccatctccgtcgaggaggaggttgaagaaGAGgaggaggaggaggaggaggaggatgtgctcggggcggccgtgccgctgcggcggctgctgacgagcaccgggctggacgcggacacGgggagggggagggaGggcgacgcggcggtcgtcgaggagggcgtcGggggaggaggcggcgggaggaaggtgtgcaacggcggcggcggcggcagcggggggaagggcgacggcggccgccgcgacgccgacgcgcactaccggcgtatgatccaggccgacccggcgaacccgctgctgctcggcaactacgcgaggttcctcaaggaggtggagggcgacgcggcgagggcgcaggagtactgcgagcgcgccatcgtcgccaaCcccggcgacggcgacgccctcgcgctctacgcgggcctcgtctgggagaccacccgcgacgccgaccgcgccgacgcctacttcacccgcgccgtccacgccgcccccgacgactggtga
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| Protein seq | MLLRSASSPLLGHAACASAAAAAAEHVGAVVVVVPVSPAAARQRGPPLCRATSEGDLMAAVSARPRALSVASSASISVEEEVEEEEEEEEEEDVLGAAVPLRRLLTSTGLDADTGRGREGDAAVVEEGVGGGGGGRKVCNGGGGGSGGKGDGGRRDADAHYRRMIQADPANPLLLGNYARFLKEVEGDAARAQEYCERAIVANPGDGDALALYAGLVWETTRDADRADAYFTRAVHAAPDDW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.043156 | 5.913319 | 3.812078 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0606700 | RBH | 13.242770 | 13.773173 | 4.013381 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g40440 | RBH | 10.930446 | 11.738441 | 1.415356 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0606700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0021840 | RBH | 1.862468 | 0.0 | 12.558193 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0021690 | RBH | 1.498679 | 0.0 | 1.467400 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0021800 | RBH | 4.938327 | 1.665725 | 5.453002 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0021490 | RBH | 0.771665 | 0.177274 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0021950 | RBH | 39.611725 | 4.168504 | 13.189774 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0388400 | SBH | 0.9915115 | 3.6084 | 1.3463065 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0021370 | RBH | 1.222700 | 0.369840 | 1.076361 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0359400 | RBH | 10.5581525 | 6.131602 | 8.7792865 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0021780 | RBH | 0.278898 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0021750 | RBH | 5.522790 | 6.884986 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0021410 | RBH | 26.152590 | 8.931043 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0022100 | RBH | 3.173443 | 0.363360 | 1.794323 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0021690 | RBH | 1.637977 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G021460 | RBH | 1.023082 | 0.0 | 2.526656 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017960 | RBH | 0.0 | 0.0 | 0.0 |
