Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_06g0017620 | OGI:06052830 | 9/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr06:19860799-19862275 | ||||||||
| Gene Symbol | prx83 | ||||||||||
| DNA seq | cctccgtgtacatgtagtagattttgatcattcaaaacgtgccaatacacAtttttaatttcgcatcacatcatattgcacatatacgaattcatatacgaatgcatcgttagaagaaacaaaaattgacatatacaaacgaatacagtaaacgtaaaattttgatttagacaaatacagatgagtccAaaaagagttgggtggactcaaagcttaaacaaaaggagatatgacggccGgccatcaataatgaccattggccacggagcacttgatcctgacctccgtcggagtccaagggtccgggcgtatgttccccatcttcaccatcgccctcgcgaagtcggcgaagaacgcctcctggttgcgggagtaggtcagcacaagctcgccggcccagctgcccggggtgtagagcgcctggtcggtggcgaggagcccccgcttgaagagcaggtcctggtagtagagcgtgtcgaacttcatcggcgtccgctcgtcgaacggcacgccggcctcctcgcagttgtccggccgctggcacgtccgacggagctccgccgcgtaggacgggtcgatgtcgtcgtagccctcgccgccgtcgatgcggccctcgaagttgtcgcagctgtgggccttgccgacggtgtgcgcgccggagagcgcggtgaggtcgcgttcgtcgaggccgtgctcgcggaacaccccgaggaggacgtcgaggtggccgtttctcgggtccgggagctcctccgtggcgttcttggtaacgaagcgcgagtccttgcggccgagcagcacgccccagctgggcccgccgagcatggcgacggcgtcgcgggaggcgagcgcgaggacgtcggcgcaggagacggtggccgggcagctgcgctcgagctcggacttgatggcgtcgatcacgtcgaagccggcgagggaggcgttggctttttcctccttctcgctctccgtggaatccgtactgtccaggaggagggagccatcacaaccctgcatatatatccatgtgaccgatgattgtgagacaaatgcattccatgaaatagaagtaattattaaagaatctttaatgtaaaagAaatcataacaaaattaataataataatAataTtttttagtaagtaactagcatcatactaaataaacgaaggtaatacttacattgacgaagcagtcgtggaagaagaggcggaggatggccggcgccatcctcgggttggcggcgacgctccgctccatcaccgatcgcacgatgttctgcgcgttggggcacgtgttatcgtagtaactctccgtgtactcgacgggattgccctcggctgcggcggtggaggccagagccgcgacgagcagagcaaccgaagcgacggcgacgacggccctagagctaaacgccatggctgacgatgagctcgtgtgtcaaccacgagatcaagcccgcctacgtacctagctc
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| CDS seq | atggcgtttagctctagggccgtcgtcgccgtcgcttcggttgctctgctcgtcgcggctctggcctccaccgccgcagccgagggcaatcccgtcgagtacacggagagttactacgataacacgtgccccaacgcgcagaacatcgtgcgatcggtgatggagcggagcgtcgccgccaacccgaggatggcgccggccatcctccgcctcttcttccacgactgcttcgtcaatggttgtgatggctccctcctcctggacagtacggattccacggagagcgagaaggaggaaaaagccaacgcctccctcgccggcttcgacgtgatcgacgccatcaagtccgagctcgagcgcagctgcccggccaccgtctcctgcgccgacgtcctcgcgctcgcctcccgcgacgccgtcgccatgctcggcgggcccagctggggcgtgctgctcggccgcaaggactcgcgcttcgttaccaagaacgccacggaggagctcccggacccgagaaacggccacctcgacgtcctcctcggggtgttccgcgagcacggcctcgacgaacgcgacctcaccgcgctctccggcgcgcacaccgtcggcaaggcccacagctgcgacaacttcgagggccgcatcgacggcggcgagggctacgacgacatcgacccgtcctacgcggcggagctccgtcggacgtgccagcggccggacaactgcgaggaggccggcgtgccgttcgacgagcggacgccgatgaagttcgacacgctctactaccaggacctgctcttcaagcgggggctcctcgccaccgaccaggcgctctacaccccgggcagctgggccggcgagcttgtgctgacctactcccgcaaccaggaggcgttcttcgccgacttcgcgagggcgatggtgaagatggggaacatacgcccggacccttggactccgacggaggtcaggatcaagtgctccgtggccaatggtcattattga
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| Protein seq | MAFSSRAVVAVASVALLVAALASTAAAEGNPVEYTESYYDNTCPNAQNIVRSVMERSVAANPRMAPAILRLFFHDCFVNGCDGSLLLDSTDSTESEKEEKANASLAGFDVIDAIKSELERSCPATVSCADVLALASRDAVAMLGGPSWGVLLGRKDSRFVTKNATEELPDPRNGHLDVLLGVFREHGLDERDLTALSGAHTVGKAHSCDNFEGRIDGGEGYDDIDPSYAAELRRTCQRPDNCEEAGVPFDERTPMKFDTLYYQDLLFKRGLLATDQALYTPGSWAGELVLTYSRNQEAFFADFARAMVKMGNIRPDPWTPTEVRIKCSVANGHY |
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| Function | Peroxidase 36 [UniProtKB/Swiss-Prot:Q9SD46] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0017620 | OsNaBo_06g0017620.01 | Chr06 | 19860824 | 19862275 | - | NAM | ||
| CDS seq | atggcgtttagctctagggccgtcgtcgccgtcgcttcggttgctctgctcgtcgcggctctggcctccaccgccgcagccgagggcaatcccgtcgagtacacggagagttactacgataacacgtgccccaacgcgcagaacatcgtgcgatcggtgatggagcggagcgtcgccgccaacccgaggatggcgccggccatcctccgcctcttcttccacgactgcttcgtcaatggttgtgatggctccctcctcctggacagtacggattccacggagagcgagaaggaggaaaaagccaacgcctccctcgccggcttcgacgtgatcgacgccatcaagtccgagctcgagcgcagctgcccggccaccgtctcctgcgccgacgtcctcgcgctcgcctcccgcgacgccgtcgccatgctcggcgggcccagctggggcgtgctgctcggccgcaaggactcgcgcttcgttaccaagaacgccacggaggagctcccggacccgagaaacggccacctcgacgtcctcctcggggtgttccgcgagcacggcctcgacgaacgcgacctcaccgcgctctccggcgcgcacaccgtcggcaaggcccacagctgcgacaacttcgagggccgcatcgacggcggcgagggctacgacgacatcgacccgtcctacgcggcggagctccgtcggacgtgccagcggccggacaactgcgaggaggccggcgtgccgttcgacgagcggacgccgatgaagttcgacacgctctactaccaggacctgctcttcaagcgggggctcctcgccaccgaccaggcgctctacaccccgggcagctgggccggcgagcttgtgctgacctactcccgcaaccaggaggcgttcttcgccgacttcgcgagggcgatggtgaagatggggaacatacgcccggacccttggactccgacggaggtcaggatcaagtgctccgtggccaatggtcattattga
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| Protein seq | MAFSSRAVVAVASVALLVAALASTAAAEGNPVEYTESYYDNTCPNAQNIVRSVMERSVAANPRMAPAILRLFFHDCFVNGCDGSLLLDSTDSTESEKEEKANASLAGFDVIDAIKSELERSCPATVSCADVLALASRDAVAMLGGPSWGVLLGRKDSRFVTKNATEELPDPRNGHLDVLLGVFREHGLDERDLTALSGAHTVGKAHSCDNFEGRIDGGEGYDDIDPSYAAELRRTCQRPDNCEEAGVPFDERTPMKFDTLYYQDLLFKRGLLATDQALYTPGSWAGELVLTYSRNQEAFFADFARAMVKMGNIRPDPWTPTEVRIKCSVANGHY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0017620 | OsNaBo_06g0017620.02 | Chr06 | 19860799 | 19860948 | - | IsoSeq | ||
| CDS seq | tactgtattcgtttgtatatgtcaatttttgtttcttctaacgatgcattcgtatatgaattcgtatatgtgcaatatgatgtgatgcga |
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| Protein seq | YCIRLYMSIFVSSNDAFVYEFVYVQYDVMR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 20.051968 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0521500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g32990 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0521500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0017800 | SBH | 0.0 | 10.080523 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0017630 | RBH | 0.0 | 0.836071 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0017730 | SBH | 0.0 | 6.807137 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0017640 | RBH | 0.0 | 0.114859 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0017790 | RBH | 0.0 | 0.0 | 0.882024 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0297400 | SBH | 0.006482 | 13.8306715 | 0.0413505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0017330 | SBH | 0.0 | 0.282142 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0272900 | SBH | 0.0140095 | 22.333703 | 0.0099385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0017680 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0017590 | SBH | 0.000000 | 2.333092 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0017290 | RBH | 0.0 | 9.850623 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0018020 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0017440 | RBH | 0.0 | 3.714145 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G017440 | RBH | 0.0 | 0.693780 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0017640 | SBH | 0.0 | 0.0 | 0.0 |
