Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_06g0006480 | OGI:06013410 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr06:4801467-4804879 | ||||||||
| Gene Symbol | PTF1, OsPTF1, OsbHLH096, bHLH96 | ||||||||||
| DNA seq | tcatttttcaggagggattgcagcagcagcagccatgcctttctggttggatatggccgaagcgagagcaatgggcatcaggcagagacccttgttctgaagatactgcatcgcgctggtgatgctcgtttccatcagcttcactacctcttgctcaaaggcagagctgtcttctgagtctggcatgtctggtggcccttgtgaaatggttgaagctgatagagatggattactatggcactgcagaagttcaatgagtagatggttatttcagacatagtgagatccaggtgaattgtggccccatcagttattacatatttaagtaaactcaatgaaaaccagaggagcaaatctcggatataaattgggactacaatgcacagaaagattcttccagtaggctacaatattatggtagaactgatctaggatgtcgaaaacttgaaactggatatgcatatgttgcactacatataaataatatattatttAtaatgtagccaattaagatgccaacccaagaaagcacaagttttggttagttatcttattaatttaatcagaacacacaaaaaaaagttaagcagtattgattattgaagcataatggcacaatgcataagcagttttgatcacagaaggttttgttcccctcgtacacaagtgcaaaggtatatcttcgtttgtcctatcttgatgccaatggtcgcaataatgggcaattcaaaactaatctcacagagcaaataaattaataaaggcaagccaatgttcatatgaaatcatggaatGgtcatgaatatttaagtaaactcaatgaaaaccagaggagcaaatctcggaataaattgggactacaatgcacagaaagattcttccagtaggctacaatattatggtagaactgatctaggatgcgaaaacttgaaactggatagcatatgtgcactacataaaataatatattattttaatgtagccaattaagatgccaacccaagaaagccaagttttggtagttatcttattaatttaatcagaacacacaaaaaaaagttaagcagtattgattattgaagcataatggacaatgcataagcagttttgatcacagaaggtttgtcccctctacacaagtgcaaagtatatcttcgtttgtcctatctgatgccaatggtcgcaaaatgggcaaTtcaaaactaatctcacagagcaaataaattaataaaggcaagccaatgttcatatgaaatcatggaaTggtcatgaatatttggactgatgttAtttgttatgtatctAaatgtaatttaaggggaaaaaactgaggTtaaaataaattgaCttgtttccatagctctacaatcttttaacatagcacagcctacattcaactagtctttctaacaaggatTCtgtttggaaacatAaagaaataggaaagctgcacaCctcggTttgagattccctaagaaggggaagaactgctccaggagctCctagCctgctcatgctcaatAcctacagaattcaagaagactgtcagccatcagaaaaggagctaacgcccccacctcatcccacacaccaaataaacctgactgcagatgtaccttgacctgaagcTgaagaaatttcacataatcaaTTatttcatcaagcattgatgccTtatctgcctgctcatacaaagAagggttaattgtcaggagttctAaaccaaaatttgtatacattttattctatactagctaaatacacttgcTttgctacggattaaaataaattatacatgtgCTaatattgcttggaaaaaattattgtgatgtttttgggacaatttattccctgtagaTgtcTttgcataatAaatttgtaTtttagagaTgaaataaaATagaatcatatgtagaaaactaTTttgtaaaacacatgaaggggtatttagtaaaagcataaacaatactctatataatagaggtGgggtggcagattcactgccaccaccattgttttcTttgAaaaggagtatagatagatgccaataaaaaaataattgcattgaaggcagaatatatgtatcagcAacattataaatcccatcCAactgaaacaaagacaacggtacatctaacgcccatgtgttggctgcaccaaaagatcaatacttggatctgcgagcccttgtacgtggcttcgcattggcactatttccaggagctgaatttgcttGgggttccacatcagAagaatggttAatagggtactcactattatggtcatggatcaatggtggtatctgaacattttcAtacacAaaattcaactgttgaGgtataaaatTGgagagaaagaaagtgaaacactgtcaatgagaaatgcAaatagaacctttgaaggaagtGgtggcccttgtgcatcagtaactgccaaatgactaccagatgtgaatgtagggagaggtatattccggAtaTtttgctcctgcaatAtgaaaattgattcatcagtacagttagaattgagtggatagtgagctgcGgatgtgggaaTtgctgtttagtggtaaagcttgaaattgaaacctgttgagcagccttcaaaccacccGctcctagTgcctgcaggacagtaccAaacgaagggatggAaccaccattgagaaactctttgctatcctggattgccaaaAGagcaaaaAATaattcaatgaagcAgataatatggcaattatgtatatgtggtgaattggtgatcattacAtgtagtgatgctatggcagcattatcaaacagcgagggattcccatttggaagacttgttttgttcAacatagcaacATtttgtgccccttggaaaccgaaagcatctagatttactggttccatgaaggaggaaacgttttggaatgctgaacacaacgtcGgggctgaagaaacggcatgcacatcagcaagAaaagcagaaatgtcactaccattgctatcaattgaactggacaaagcatgaGgcagttctgcaagaccagGTgtatccaatttcgcatcaaaTgttccagatgttgaattgcactgaagaaCccctgggggaattgaattgcttcgcagattgctgctgttctgtagctgttgaagatccagaagattgttagggagctcacccttaggtagaatctGgccagataatggatGagcctgggtgttgtatggcaagcatccATttgcaagcatagtggggttcctttcattctccgtgatctttaaactgcgatctgatccagctcccatgaaATagcctgaaggtggtaggcttccttcTtctgcatatgattccgacgaaccgtcaacaaaattatagttctcagaacctgaattgccaggccacatgtaggaaccagcagagtagtccat
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| CDS seq | atggactactctgctggttcctacatgtggcctggcaattcaggttctgagaactataattttgttgacggttcgtcggaatcatatgcagaAgaaggaagcctaccaccttcaggctATttcatgggagctggatcagatcgcagtttaaagatcacggagaatgaaaggaaccccactatgcttgcaaATggatgcttgccatacaacacccaggctCatccattatctggcCagattctacctaagggtgagctccctaacaatcttctggatcttcaacagctacagaacagcagcaatctgcgaagcaattcaattcccccagggGttcttcagtgcaattcaacatctggaacAtttgatgcgaaattggatacACctggtcttgcagaactgcCtcatgctttgtccagttcaattgatagcaatggtagtgacatttctgctttTcttgctgatgtgcatgccgtttcttcagcccCgacgttgtgttcagcattccaaaacgtttcctccttcatggaaccagtaaatctagatgctttcggtttccaaggggcacaaaATgttgctatgtTgaacaaaacaagtcttccaaatgggaatccctcgctgtttgataatgctgccatagcatcactacaTgatagcaaagagtttctcaatggtggtTccatcccttcgttTggtactgtcctgcaggcActaggagCgggtggtttgaaggctgctcaacaggagcaaaAtaTccggaatatacctctccctacattcacatctggtagtcatttggcagttactgatgcacaagggccacCacttccttcaaagataccaccattgatccatgaccataatagtgagtaccctatTaaccattctTctgatgtggaacccCaagcaaattcagctcctggaaatagtgccaatgcgaagccacaactcctgacaattaaccctTctttgtatgagcaggcagataAggcatcaatgcttgatgaaatAAttgattatgtgaaatttcttcAgcttcaggtcaaggTattgagcatgagcagGctagGagctcctggagcagttcttccccttcttagggaatctcaaAccgagtgccatagtaatccatctctatcagcttcaaccatttcacaagggccaccagacatgccagactcagaagacagctctgcctttgagcaagaggtagtgaagctgatggaaacgagcatcaccagcgcgatgcagtatcttcagaacaagggtctctgcctgatgcccattgctctcgcttcggccatatccaaccagaaaggcatggctgctgctgctgcaatccctcctgaaaaatga
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| Protein seq | MDYSAGSYMWPGNSGSENYNFVDGSSESYAEEGSLPPSGYFMGAGSDRSLKITENERNPTMLANGCLPYNTQAHPLSGQILPKGELPNNLLDLQQLQNSSNLRSNSIPPGVLQCNSTSGTFDAKLDTPGLAELPHALSSSIDSNGSDISAFLADVHAVSSAPTLCSAFQNVSSFMEPVNLDAFGFQGAQNVAMLNKTSLPNGNPSLFDNAAIASLHDSKEFLNGGSIPSFGTVLQALGAGGLKAAQQEQNIRNIPLPTFTSGSHLAVTDAQGPPLPSKIPPLIHDHNSEYPINHSSDVEPQANSAPGNSANAKPQLLTINPSLYEQADKASMLDEIIDYVKFLQLQVKVLSMSRLGAPGAVLPLLRESQTECHSNPSLSASTISQGPPDMPDSEDSSAFEQEVVKLMETSITSAMQYLQNKGLCLMPIALASAISNQKGMAAAAAIPPEK |
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| Function | Transcription factor LRL1 [UniProtKB/Swiss-Prot:Q9ZUG9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0006480 | OsNaBo_06g0006480.01 | Chr06 | 4801467 | 4804879 | - | NAM | ||
| CDS seq | atggactactctgctggttcctacatgtggcctggcaattcaggttctgagaactataattttgttgacggttcgtcggaatcatatgcagaAgaaggaagcctaccaccttcaggctATttcatgggagctggatcagatcgcagtttaaagatcacggagaatgaaaggaaccccactatgcttgcaaATggatgcttgccatacaacacccaggctCatccattatctggcCagattctacctaagggtgagctccctaacaatcttctggatcttcaacagctacagaacagcagcaatctgcgaagcaattcaattcccccagggGttcttcagtgcaattcaacatctggaacAtttgatgcgaaattggatacACctggtcttgcagaactgcCtcatgctttgtccagttcaattgatagcaatggtagtgacatttctgctttTcttgctgatgtgcatgccgtttcttcagcccCgacgttgtgttcagcattccaaaacgtttcctccttcatggaaccagtaaatctagatgctttcggtttccaaggggcacaaaATgttgctatgtTgaacaaaacaagtcttccaaatgggaatccctcgctgtttgataatgctgccatagcatcactacaTgatagcaaagagtttctcaatggtggtTccatcccttcgttTggtactgtcctgcaggcActaggagCgggtggtttgaaggctgctcaacaggagcaaaAtaTccggaatatacctctccctacattcacatctggtagtcatttggcagttactgatgcacaagggccacCacttccttcaaagataccaccattgatccatgaccataatagtgagtaccctatTaaccattctTctgatgtggaacccCaagcaaattcagctcctggaaatagtgccaatgcgaagccacaactcctgacaattaaccctTctttgtatgagcaggcagataAggcatcaatgcttgatgaaatAAttgattatgtgaaatttcttcAgcttcaggtcaaggTattgagcatgagcagGctagGagctcctggagcagttcttccccttcttagggaatctcaaAccgagtgccatagtaatccatctctatcagcttcaaccatttcacaagggccaccagacatgccagactcagaagacagctctgcctttgagcaagaggtagtgaagctgatggaaacgagcatcaccagcgcgatgcagtatcttcagaacaagggtctctgcctgatgcccattgctctcgcttcggccatatccaaccagaaaggcatggctgctgctgctgcaatccctcctgaaaaatga
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| Protein seq | MDYSAGSYMWPGNSGSENYNFVDGSSESYAEEGSLPPSGYFMGAGSDRSLKITENERNPTMLANGCLPYNTQAHPLSGQILPKGELPNNLLDLQQLQNSSNLRSNSIPPGVLQCNSTSGTFDAKLDTPGLAELPHALSSSIDSNGSDISAFLADVHAVSSAPTLCSAFQNVSSFMEPVNLDAFGFQGAQNVAMLNKTSLPNGNPSLFDNAAIASLHDSKEFLNGGSIPSFGTVLQALGAGGLKAAQQEQNIRNIPLPTFTSGSHLAVTDAQGPPLPSKIPPLIHDHNSEYPINHSSDVEPQANSAPGNSANAKPQLLTINPSLYEQADKASMLDEIIDYVKFLQLQVKVLSMSRLGAPGAVLPLLRESQTECHSNPSLSASTISQGPPDMPDSEDSSAFEQEVVKLMETSITSAMQYLQNKGLCLMPIALASAISNQKGMAAAAAIPPEK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.408639 | 12.881684 | 8.455420 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0193400 | RBH | 3.815320 | 3.760559 | 5.332081 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g09370 | RBH | 2.109908 | 2.524654 | 1.407438 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0193400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0006550 | RBH | 0.441000 | 21.980387 | 3.936326 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0006370 | RBH | 0.901104 | 4.050570 | 3.288747 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0006360 | RBH | 2.258210 | 26.231596 | 13.935782 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0006490 | RBH | 0.225473 | 0.448511 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0006370 | RBH | 2.528441 | 55.393238 | 16.683157 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0079500 | RBH | 9.0063665 | 26.293946 | 39.4882165 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0006240 | RBH | 0.473159 | 1.646400 | 2.078308 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0079400 | RBH | 13.2755335 | 23.828145 | 10.1535805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0006600 | RBH | 0.399033 | 0.436934 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0006470 | RBH | 1.251533 | 15.227613 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0006480 | RBH | 5.238942 | 17.289768 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0006510 | RBH | 0.702320 | 2.808939 | 2.985930 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0006380 | RBH | 0.526041 | 13.781568 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G006210 | RBH | 0.939870 | 2.432011 | 3.074587 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0036720 | SBH | 1.770954 | 12.341908 | 4.503440 |
