Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_06g0006310 | OGI:06013140 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr06:4712612-4714889 | ||||||||
| Gene Symbol | MPKK5, OsMPKK5 | ||||||||||
| DNA seq | atgtctgcgcgtcccaaccctccgcccgtgcggcggccgcgctggcgccgggatctcaccgtccggacgccgcgcgccgacgtcgccatgtcgctcgccgcgccaccgccgccgccgccgccgccgtccctcgacaccacggtggagcccccgctcgctgagatggagctcgtctgcctcgtcgacagcggcgaggccggcgaggtgtggttggtgcgtcaccgtggcacgcggcgggagtacgcgctcaaggtgctctacgagcgctgggccgccgccgccggcggcgacgccgacgacgacgaccactcgtccctggtgcggtgccacggctccacgcgccggagcggcggcggcggcgaggagcaccggatcgtcctgctcgagcacatgcgcggcgggtctctctccggccgccgcgtcgcggacgagcgcgccctcgccggcgtcgcgcgccaggcgctctccgggatcgcgcacctccaccgccgcggcgtcgtccacggggacatcaggccgtccaacctgttcgtcgactcgtcggggcgcgtcaagatcgccgggttcggcgccgaccgcgccatcgaccggacggccaacggcgggtcctgcagggcgtcgctcagccccgccgcgtacatgagccccgaccacgccggcggcggcggcggcggctacgccggcgacatatggagcttcggcctcaccatcctcgagctctacacgggcagcttccccttggtcgagcaggggcaatcgatcccgctgacgtgttactccgacggaccaccggaggcgccggccaccgcctcgccggagttccgaagcttcgtcgggtgttgcctgcagatgaatccggcgaagcggccgtccgccgtgcagctcatggatcacccgttcgtcacgtcctccgtattttctcaagaataatatagttatttttaaaaaaaatgatattggtatgacatatttctactacaaaatactttcctccgtccaaaaaaaactaatatagaattggatttaacataatccagtacaacgagtctaaacagactcgattagctgtactagattgtgacaaatacaatctaaggttgatttttttttgggacggggagtacaacagaaaatttaaatttaaaatcgactcattttaaggggAaaaaaatcgatattgtgaatggtacttacacatttaccatcatatttgtctttttttttctcacgtcataggttgagtttagatttgaatttatcttagtggtaaatctgtaaatgcaacatactctattgaaatttttgttttggtaatcttcataattattgagaagttagaaacacacaaggtgatgcccctttgaggaatgaaagcatatttcctccttgaaatgatgatgattgaagctattaatggctcaattctttacattgtagTttttgttgaattatagttgtacgacgattttccatatgatcttataggatagtacccaatgtatttttgtatattcaaattcaaatataaatattataatacataacttcgagtctgcaactttgatgtactgtattggctgcttcgtcatattagtgatgtggattagatcaaactgaccagaaattccaacgatcatctggaaacaccatggtccgcttatttgattcatggctttgattgcatggagatctcgttgaattctacttgtatgtgtaaagcctgatcagaacaattagttgataagtccattaaaccctcctaactattgtgTtttttctttctAaaatcacgtctcaacttcaaaattgaatattcaaccctcccaaactatcaatactccctccgccccaaattatagggcgcccacTtttgaagaaaaatcaaactcggtagcttttgacaaataatcatactaactatatctatactaaatattatgcatgttatatcacaagattagtactttcatgtgatactaattttatatttgttgggatcatagaatgaaataaatgctggtcaaagttgttattgaagaccgtgtaagaaaatataggtattataatttgggacagagggagtaacatttaattgaccccagtctaaacaaggagggtattcatcgcgtagcgcttatatggactccagccagcaacataaattaaaaaatagtatgtcctacatgctagagattgattcccttattcctcttactcctctcttatctccctttctcagtttctccatgtgtctaggatgtcgatgtgcttgtcgtga
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| CDS seq | atgtctgcgcgtcccaaccctccgcccgtgcggcggccgcgctggcgccgggatctcaccgtccggacgccgcgcgccgacgtcgccatgtcgctcgccgcgccaccgccgccgccgccgccgccgtccctcgacaccacggtggagcccccgctcgctgagatggagctcgtctgcctcgtcgacagcggcgaggccggcgaggtgtggttggtgcgtcaccgtggcacgcggcgggagtacgcgctcaaggtgctctacgagcgctgggccgccgccgccggcggcgacgccgacgacgacgaccactcgtccctggtgcggtgccacggctccacgcgccggagcggcggcggcggcgaggagcaccggatcgtcctgctcgagcacatgcgcggcgggtctctctccggccgccgcgtcgcggacgagcgcgccctcgccggcgtcgcgcgccaggcgctctccgggatcgcgcacctccaccgccgcggcgtcgtccacggggacatcaggccgtccaacctgttcgtcgactcgtcggggcgcgtcaagatcgccgggttcggcgccgaccgcgccatcgaccggacggccaacggcgggtcctgcagggcgtcgctcagccccgccgcgtacatgagccccgaccacgccggcggcggcggcggcggctacgccggcgacatatggagcttcggcctcaccatcctcgagctctacacgggcagcttccccttggtcgagcaggggcaatcgatcccgctgacgtgttactccgacggaccaccggaggcgccggccaccgcctcgccggagttccgaagcttcgtcgggtgttgcctgcagatgaatccggcgaagcggccgtccgccgtgcagctcatggatcacccgatgtcgatgtgcttgtcgtga
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| Protein seq | MSARPNPPPVRRPRWRRDLTVRTPRADVAMSLAAPPPPPPPPSLDTTVEPPLAEMELVCLVDSGEAGEVWLVRHRGTRREYALKVLYERWAAAAGGDADDDDHSSLVRCHGSTRRSGGGGEEHRIVLLEHMRGGSLSGRRVADERALAGVARQALSGIAHLHRRGVVHGDIRPSNLFVDSSGRVKIAGFGADRAIDRTANGGSCRASLSPAAYMSPDHAGGGGGGYAGDIWSFGLTILELYTGSFPLVEQGQSIPLTCYSDGPPEAPATASPEFRSFVGCCLQMNPAKRPSAVQLMDHPMSMCLS |
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| Function | Mitogen-activated protein kinase kinase 4 [UniProtKB/Swiss-Prot:O80397] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0006310 | OsNaBo_06g0006310.01 | Chr06 | 4712612 | 4714889 | + | NAM | ||
| CDS seq | atgtctgcgcgtcccaaccctccgcccgtgcggcggccgcgctggcgccgggatctcaccgtccggacgccgcgcgccgacgtcgccatgtcgctcgccgcgccaccgccgccgccgccgccgccgtccctcgacaccacggtggagcccccgctcgctgagatggagctcgtctgcctcgtcgacagcggcgaggccggcgaggtgtggttggtgcgtcaccgtggcacgcggcgggagtacgcgctcaaggtgctctacgagcgctgggccgccgccgccggcggcgacgccgacgacgacgaccactcgtccctggtgcggtgccacggctccacgcgccggagcggcggcggcggcgaggagcaccggatcgtcctgctcgagcacatgcgcggcgggtctctctccggccgccgcgtcgcggacgagcgcgccctcgccggcgtcgcgcgccaggcgctctccgggatcgcgcacctccaccgccgcggcgtcgtccacggggacatcaggccgtccaacctgttcgtcgactcgtcggggcgcgtcaagatcgccgggttcggcgccgaccgcgccatcgaccggacggccaacggcgggtcctgcagggcgtcgctcagccccgccgcgtacatgagccccgaccacgccggcggcggcggcggcggctacgccggcgacatatggagcttcggcctcaccatcctcgagctctacacgggcagcttccccttggtcgagcaggggcaatcgatcccgctgacgtgttactccgacggaccaccggaggcgccggccaccgcctcgccggagttccgaagcttcgtcgggtgttgcctgcagatgaatccggcgaagcggccgtccgccgtgcagctcatggatcacccgatgtcgatgtgcttgtcgtga
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| Protein seq | MSARPNPPPVRRPRWRRDLTVRTPRADVAMSLAAPPPPPPPPSLDTTVEPPLAEMELVCLVDSGEAGEVWLVRHRGTRREYALKVLYERWAAAAGGDADDDDHSSLVRCHGSTRRSGGGGEEHRIVLLEHMRGGSLSGRRVADERALAGVARQALSGIAHLHRRGVVHGDIRPSNLFVDSSGRVKIAGFGADRAIDRTANGGSCRASLSPAAYMSPDHAGGGGGGYAGDIWSFGLTILELYTGSFPLVEQGQSIPLTCYSDGPPEAPATASPEFRSFVGCCLQMNPAKRPSAVQLMDHPMSMCLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0191500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g09190 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0191500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0006370 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0006200 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0006190 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0006320 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0006200 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0077700 | RBH | 0.029711 | 0.8642335 | 0.0577055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0006070 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0077600 | RBH | 0.034647 | 8.6282655 | 0.0260235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0006430 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0006300 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0006310 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0006360 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0006210 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G006040 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0036180 | SBH | 1.010743 | 7.344978 | 1.670722 |
