Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_06g0004820 | OGI:06033590 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr06:3385897-3390627 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ccacgcagcggagcaccaccagatctcccttggaccggttccatcgtctccgccgtggaccggcgccaaccctcgccaccgcacgtcgccgggctccggcgaggccgccggagtgtcgtcgggaagcggagggcctcctccgtgccgcgcctccctccgcccctcaccccttcctcctcatggctaggtcctgacctgaggtggggctccgcggctactgctccccgcctcgccccgcccccgccccctgcctctccgccgcggcgctactccgggctccggcacctccctctccgtgcgctcctgcggggtaagccggtgagggacgcttagtggaattgctagtgctcttactcttgcgttagttagaggtagagctgcttggagtgaggaattgatgttgcttttttttttgggaagAaaaaaaaatctactctgaacttctgaagcaagtaggattgcttgatgttgtagatgaaaccagtgctaaggaatgtggtccttttgtttgttctgtattgtatcccagtttcacgatgttgtttagattccagcatttgcatactccatagctttgttaccagtctgattatgagtgaaaccatggagctttccgtagtatatatgaaaattttcctttcttttctcagccaggaatgccaatataattgatagtcaacatcctaggatatgagacatgttgcatggggcttcagtttagtggatgcgtgatcactctaacaactagtacggtagtaccaactagtactgccagcataattgaccacgttgcatttgacatcttatataaagtaggggattttattacgacgcatatgctgtagatttctcctttctatcgattttgtgtttatttttgtaccacctgtggattttaagtggaacaattctctccttttgttgcagaagttgtgtggagctatctctgatgctgtttatgcaaagacttatgctcacttcttgattagaaatggacagtagccgagattctgaagaagaaaggcctcaaaggaaggacaatggcgaagaaactgaaaatggggaagatggtggaaatgctttgagcctcaaggatgttgccaatgagcttcttggttgtgttgtccatagtgaggaagaggcatacaaactgtattgtgactatggacatagaattggttttagtgtccgcaagggtaaacagtcttacttcattggcacgaagaatattcgtacaaaagattactactgctcaaaagaagggcttaagtacgatgagccagttacagaagcaaattttaatcgaccagacacaagaactaattgcaaagcaatgatccgctttagagttgatgagaaaggacgctggacagtcatacgctttgtcccaacgcataatcaccagttggctaaacctggggaaagacacatgttgagatctgcaaagtcgcttgctgttggaaaatcaggtgtcatagatccacaagcatctacggaatcacatccaataaatggtttctctcatatgataggaagtgatattgtggagcctcctgggtatactataagggattgctacaatcatgtgagcatgcagggtataacgataatcgaggcaggagacagccaaagtcttgtgaactatttcaagcgtagaaccaatgaggaaggtatgttctattgggatgttcaagttgatcaagaaggtcgtatgaccaactttttcttcagggatgccaaaagtagaaatgattttgactgctttggagatgctgttatatttgacacaaccttccgcacaaataaatacagcctggtatgtgctccttttgttggagttaatcaccattggcagaatattgtttttggatgtgcattcttgttagatgagtcctcagcttcctatgtttggttatttaaatcattcctcgagtcaatgggtggccggtctccaaaatcaattttcactgatcaggatgacgctattacgcaggcagttcagctggtttttcctaacacgcagcactgtttttcctattggcatattctgaaaaatgcacagtctcatttaggcacggtaaatacctctcaaacatttcaaaatatgtttatgaagtgcatgcaaggacctaactcagaaacggagcttgaggaatcatgggccacaatgttaaatgaatataagttacaggagaatagctggcttagcgacctttataggtcccgcaataaatggtgctcagcatttaataaagatactttcgatggtgggatcaattcatctcagtggggggaggtctcaaacaatacatttactggaatatctgatgaatctacccctcttacacgatttgcccttttactagaaaaggttttcaagggtctacgtagaaatgaatctgaagaggattttcgctgtagccaaactgctccagttcgtgcaattaaacacagtacagttctgaagcaggccgcagaatcctacacgcataagatatacaaattatttgaggcagaatttctggatgggtgcggagcaacttcatgccatgaaagttcttgtggtgggaacttgttgaggtttgaaattactatgcaggggaggggatcaaaagtgtggaccgttcttcttgatacctccacgatggaaatctcttgtggttgcagaaagtttgaaaggatgggtcttctttgttcacatgctctgaaagccttcagcctgcaaaatgtggacacaattcctgagaagtacatttcgaaacgatggacaaaagatgccaggagaagcatgtataagcttagtcaagatgattcaacacaacaggaatgcactgaggctgaacttgcatatcgcaaccgggcaacgcagtatgcatgtagccttatagcgaagagccaggaactggatgaatcaagaaagatattctgggacacccttgaaacaggagaaaaagcacttgatgtattctttgaaattagaagtttgcgtagtcaagctgcaaaagatgtcagtaaaagggacaaaaagaagaaaaaatcatctaaaggaccaagcacaagtgagtagcaaatttattccttcatgcttgtaaaacacaattttgttaaaaaatataccctctccgtgcagaaaaagcaaaaccaaccccagcaacttcctcagctgtacctgaacttcttgcccaaactaatgtgcaccagtttcaatctgcacaagatgctcagggtaacacgacaattggtagaccgttgtactatcaggtacacatatgttactgggagtttttgtttccttctggcatataaaactgatcttacaccagcatgcttcatgttttgcaggctttttcatctgccccaatgcaaccaaaccagatctacatgcatccgaacatgcacacaatgcctctttgtgcaccacaggtattacggtcagcagactgacctaaaaaactttgcttatctgttatttgagctgctcattgccgatattgctacatgccattctgggattaaagcaaataattttttgtcaatgttgttaagcgaaataactggactgtgaactgttcaaatatgtaccatggcttacgatggtacttcaccatccttgtgttgactgacatagttccaagaagaaaatttttcgaggggagttccaagaataaaatgaatctgacccatcaaacattcatctatgggtgtgcttattgctattcatttacacatgaccagcaggatttctcggcatattctgcaatgcgtcccaattcgaattttggtggtgcaaagaatgtctgaaggacagtaaggtatatgattcctagttttttaatccacggaaccatatgaaactacctccatttacatattgcttttgctgccactgttgtcaagaggattttactctgcatatctaggatcagaaatgaatctccctggcattttctcaactattttgagcatctttgctatgaatgtttatggggttcaaattcagctcattggaggaaccaacctgtgctgcacttcaagccttacatgctatatcactcatgatttccaggaatctgctaagacgtcttttggaaaatgctgcttggacatggatgcagccaaccacctggatggattttgtcaaccttcccggaggtgtgatgttgcttttggatgttaatttctggctcgcaactgttgatgtgtgtaactattctggtctttgacgtttctgttctgttgaagtggagttctagtaatgtcaattaggtgactgtaggcttgtaagttataattggagtgtagatgctggatgaatagaggccaggaacatgttgcttccattgtcttaaggaaaaggttgtaactgggagtagtcactagctatttacaggatcagattctttgggctaaaagatgatcagctggcgcccttgttgcctcttggcccatggtgctactagttgtcaagagcagatagcatcccttctcgaaggagttgagctgcagaacaatgtgaaaaggaagctgaaatggaagctcatgcagattcagtgaagtgcaccgtctctgcatgggaggcagtagttccaaactgaccttgttatatgttttttttgtgaagattttggatctaatttagtgtacctgtacaatctgactgctgattaagatgacacagcagtattgatctgatattgaaactgtctatgctcttcgattgttcatactttt
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| CDS seq | atggacagtagccgagattctgaagaagaaaggcctcaaaggaaggacaatggcgaagaaactgaaaatggggaagatggtggaaatgctttgagcctcaaggatgttgccaatgagcttcttggttgtgttgtccatagtgaggaagaggcatacaaactgtattgtgactatggacatagaattggttttagtgtccgcaagggtaaacagtcttacttcattggcacgaagaatattcgtacaaaagattactactgctcaaaagaagggcttaagtacgatgagccagttacagaagcaaattttaatcgaccagacacaagaactaattgcaaagcaatgatccgctttagagttgatgagaaaggacgctggacagtcatacgctttgtcccaacgcataatcaccagttggctaaacctggggaaagacacatgttgagatctgcaaagtcgcttgctgttggaaaatcaggtgtcatagatccacaagcatctacggaatcacatccaataaatggtttctctcatatgataggaagtgatattgtggagcctcctgggtatactataagggattgctacaatcatgtgagcatgcagggtataacgataatcgaggcaggagacagccaaaaaacggagcttgaggaatcatgggccacaatgttaaatgaatataagttacaggagaatagctggcttagcgacctttataggtcccgcaataaatggtgctcagcatttaataaagatactttcgatggtgggatcaattcatctcagtggggggaggtctcaaacaatacatttactggaatatctgatgaatctacccctcttacacgatttgcccttttactagaaaaggttttcaagggtctacgtagaaatgaatctgaagaggattttcgctgtagccaaactgctccagttcgtgcaattaaacacagtacagttctgaagcaggccgcagaatcctacacgcataagatatacaaattatttgaggcagaatttctggatgggtgcggagcaacttcatgccatgaaagttcttgtggtgggaacttgttgagccttatagcgaagagccaggaactggatgaatcaagaaagatattctgggacacccttgaaacaggagaaaaagcacttgatgtattctttgaaattagaagtttgcgtagtcaagctgcaaaagatgtcagtaaaagggacaaaaagaagaaaaaatcatctaaaggaccaagcacaaaaaaagcaaaaccaaccccagcaacttcctcagctgtacctgaacttcttgcccaaactaatgtgcaccagtttcaatctgcacaagatgctcagggtaacacgacaattggtagaccgttgtactatcaggctttttcatctgccccaatgcaaccaaaccagatctacatgcatccgaacatgcacacaatgcctctttgtgcaccacaggatttctcggcatattctgcaatgcgtcccaattcgaattttggtggtgcaaagaatgtctga
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| Protein seq | MDSSRDSEEERPQRKDNGEETENGEDGGNALSLKDVANELLGCVVHSEEEAYKLYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVTEANFNRPDTRTNCKAMIRFRVDEKGRWTVIRFVPTHNHQLAKPGERHMLRSAKSLAVGKSGVIDPQASTESHPINGFSHMIGSDIVEPPGYTIRDCYNHVSMQGITIIEAGDSQKTELEESWATMLNEYKLQENSWLSDLYRSRNKWCSAFNKDTFDGGINSSQWGEVSNNTFTGISDESTPLTRFALLLEKVFKGLRRNESEEDFRCSQTAPVRAIKHSTVLKQAAESYTHKIYKLFEAEFLDGCGATSCHESSCGGNLLSLIAKSQELDESRKIFWDTLETGEKALDVFFEIRSLRSQAAKDVSKRDKKKKKSSKGPSTKKAKPTPATSSAVPELLAQTNVHQFQSAQDAQGNTTIGRPLYYQAFSSAPMQPNQIYMHPNMHTMPLCAPQDFSAYSAMRPNSNFGGAKNV |
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| Function | Protein FAR1-RELATED SEQUENCE 9 [UniProtKB/Swiss-Prot:Q9SZL7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0004820 | OsNaBo_06g0004820.01 | Chr06 | 3385906 | 3390324 | + | NAM | ||
| CDS seq | atggacagtagccgagattctgaagaagaaaggcctcaaaggaaggacaatggcgaagaaactgaaaatggggaagatggtggaaatgctttgagcctcaaggatgttgccaatgagcttcttggttgtgttgtccatagtgaggaagaggcatacaaactgtattgtgactatggacatagaattggttttagtgtccgcaagggtaaacagtcttacttcattggcacgaagaatattcgtacaaaagattactactgctcaaaagaagggcttaagtacgatgagccagttacagaagcaaattttaatcgaccagacacaagaactaattgcaaagcaatgatccgctttagagttgatgagaaaggacgctggacagtcatacgctttgtcccaacgcataatcaccagttggctaaacctggggaaagacacatgttgagatctgcaaagtcgcttgctgttggaaaatcaggtgtcatagatccacaagcatctacggaatcacatccaataaatggtttctctcatatgataggaagtgatattgtggagcctcctgggtatactataagggattgctacaatcatgtgagcatgcagggtataacgataatcgaggcaggagacagccaaaaaacggagcttgaggaatcatgggccacaatgttaaatgaatataagttacaggagaatagctggcttagcgacctttataggtcccgcaataaatggtgctcagcatttaataaagatactttcgatggtgggatcaattcatctcagtggggggaggtctcaaacaatacatttactggaatatctgatgaatctacccctcttacacgatttgcccttttactagaaaaggttttcaagggtctacgtagaaatgaatctgaagaggattttcgctgtagccaaactgctccagttcgtgcaattaaacacagtacagttctgaagcaggccgcagaatcctacacgcataagatatacaaattatttgaggcagaatttctggatgggtgcggagcaacttcatgccatgaaagttcttgtggtgggaacttgttgagccttatagcgaagagccaggaactggatgaatcaagaaagatattctgggacacccttgaaacaggagaaaaagcacttgatgtattctttgaaattagaagtttgcgtagtcaagctgcaaaagatgtcagtaaaagggacaaaaagaagaaaaaatcatctaaaggaccaagcacaaaaaaagcaaaaccaaccccagcaacttcctcagctgtacctgaacttcttgcccaaactaatgtgcaccagtttcaatctgcacaagatgctcagggtaacacgacaattggtagaccgttgtactatcaggctttttcatctgccccaatgcaaccaaaccagatctacatgcatccgaacatgcacacaatgcctctttgtgcaccacaggatttctcggcatattctgcaatgcgtcccaattcgaattttggtggtgcaaagaatgtctga
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| Protein seq | MDSSRDSEEERPQRKDNGEETENGEDGGNALSLKDVANELLGCVVHSEEEAYKLYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVTEANFNRPDTRTNCKAMIRFRVDEKGRWTVIRFVPTHNHQLAKPGERHMLRSAKSLAVGKSGVIDPQASTESHPINGFSHMIGSDIVEPPGYTIRDCYNHVSMQGITIIEAGDSQKTELEESWATMLNEYKLQENSWLSDLYRSRNKWCSAFNKDTFDGGINSSQWGEVSNNTFTGISDESTPLTRFALLLEKVFKGLRRNESEEDFRCSQTAPVRAIKHSTVLKQAAESYTHKIYKLFEAEFLDGCGATSCHESSCGGNLLSLIAKSQELDESRKIFWDTLETGEKALDVFFEIRSLRSQAAKDVSKRDKKKKKSSKGPSTKKAKPTPATSSAVPELLAQTNVHQFQSAQDAQGNTTIGRPLYYQAFSSAPMQPNQIYMHPNMHTMPLCAPQDFSAYSAMRPNSNFGGAKNV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0004820 | OsNaBo_06g0004820.02 | Chr06 | 3385951 | 3390324 | + | NAM | ||
| CDS seq | atggacagtagccgagattctgaagaagaaaggcctcaaaggaaggacaatggcgaagaaactgaaaatggggaagatggtggaaatgctttgagcctcaaggatgttgccaatgagcttcttggttgtgttgtccatagtgaggaagaggcatacaaactgtattgtgactatggacatagaattggttttagtgtccgcaagggtaaacagtcttacttcattggcacgaagaatattcgtacaaaagattactactgctcaaaagaagggcttaagtacgatgagccagttacagaagcaaattttaatcgaccagacacaagaactaattgcaaagcaatgatccgctttagagttgatgagaaaggacgctggacagtcatacgctttgtcccaacgcataatcaccagttggctaaacctggggaaagacacatgttgagatctgcaaagtcgcttgctgttggaaaatcaggtgtcatagatccacaagcatctacggaatcacatccaataaatggtttctctcatatgataggaagtgatattgtggagcctcctgggtatactataagggattgctacaatcatgtgagcatgcagggtataacgataatcgaggcaggagacagccaaaaaacggagcttgaggaatcatgggccacaatgttaaatgaatataagttacaggagaatagctggcttagcgacctttataggtcccgcaataaatggtgctcagcatttaataaagatactttcgatggtgggatcaattcatctcagtggggggaggtctcaaacaatacatttactggaatatctgatgaatctacccctcttacacgatttgcccttttactagaaaaggttttcaagggtctacgtagaaatgaatctgaagaggattttcgctgtagccaaactgctccagttcgtgcaattaaacacagtacagttctgaagcaggccgcagaatcctacacgcataagatatacaaattatttgaggcagaatttctggatgggtgcggagcaacttcatgccatgaaagttcttgtggtgggaacttgttgagccttatagcgaagagccaggaactggatgaatcaagaaagatattctgggacacccttgaaacaggagaaaaagcacttgatgtattctttgaaattagaagtttgcgtagtcaagctgcaaaagatgtcagtaaaagggacaaaaagaagaaaaaatcatctaaaggaccaagcacaaaaaaagcaaaaccaaccccagcaacttcctcagctgtacctgaacttcttgcccaaactaatgtgcaccagtttcaatctgcacaagatgctcagggtaacacgacaattggtagaccgttgtactatcaggctttttcatctgccccaatgcaaccaaaccagatctacatgcatccgaacatgcacacaatgcctctttgtgcaccacaggatttctcggcatattctgcaatgcgtcccaattcgaattttggtggtgcaaagaatgtctga
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| Protein seq | MDSSRDSEEERPQRKDNGEETENGEDGGNALSLKDVANELLGCVVHSEEEAYKLYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVTEANFNRPDTRTNCKAMIRFRVDEKGRWTVIRFVPTHNHQLAKPGERHMLRSAKSLAVGKSGVIDPQASTESHPINGFSHMIGSDIVEPPGYTIRDCYNHVSMQGITIIEAGDSQKTELEESWATMLNEYKLQENSWLSDLYRSRNKWCSAFNKDTFDGGINSSQWGEVSNNTFTGISDESTPLTRFALLLEKVFKGLRRNESEEDFRCSQTAPVRAIKHSTVLKQAAESYTHKIYKLFEAEFLDGCGATSCHESSCGGNLLSLIAKSQELDESRKIFWDTLETGEKALDVFFEIRSLRSQAAKDVSKRDKKKKKSSKGPSTKKAKPTPATSSAVPELLAQTNVHQFQSAQDAQGNTTIGRPLYYQAFSSAPMQPNQIYMHPNMHTMPLCAPQDFSAYSAMRPNSNFGGAKNV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0004820 | OsNaBo_06g0004820.03 | Chr06 | 3385897 | 3390627 | + | IsoSeq | ||
| CDS seq | atgaatcaagaaagatattctgggacacccttgaaacaggagaaaaagcacttgatgtattctttgaaattagaagtttgcgtagtcaagctgcaaaagatgtcagtaaaagggacaaaaagaagaaaaaatcatctaaaggaccaagcacaaaaaaagcaaaaccaaccccagcaacttcctcagctgtacctgaacttcttgcccaaactaatgtgcaccagtttcaatctgcacaagatgctcagggtaacacgacaattggtagaccgttgtactatcaggctttttcatctgccccaatgcaaccaaaccagatctacatgcatccgaacatgcacacaatgcctctttgtgcaccacagcaggatttctcggcatattctgcaatgcgtcccaattcgaattttggtggtgcaaagaatgtctgaagga
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| Protein seq | MNQERYSGTPLKQEKKHLMYSLKLEVCVVKLQKMSVKGTKRRKNHLKDQAQKKQNQPQQLPQLYLNFLPKLMCTSFNLHKMLRVTRQLVDRCTIRLFHLPQCNQTRSTCIRTCTQCLFVHHSRISRHILQCVPIRILVVQRMSEG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr06 | 3389319 | 3389635 | + | OsNaBo_06g0004820.03 | OsNaBo_06g0004820.03,OsNaBo_06g0004820.01,OsNaBo_06g0004820.02 | All |
| A5 | Chr06 | 3386096 | 3386824 | + | OsNaBo_06g0004820.03,OsNaBo_06g0004820.01 | OsNaBo_06g0004820.03,OsNaBo_06g0004820.01,OsNaBo_06g0004820.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.289611 | 4.652269 | 3.105702 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0166100 | RBH | 1.972731 | 1.408459 | 1.148769 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g07010 | RBH | 1.314854 | 1.015697 | 0.291458 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0166100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004860 | RBH | 0.644589 | 0.783087 | 5.154240 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0004770 | RBH | 0.158144 | 1.850090 | 1.136748 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004710 | RBH | 0.996973 | 3.955597 | 4.769388 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004900 | RBH | 0.187047 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0004790 | RBH | 7.052803 | 6.477882 | 7.283828 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0126600 | SBH | 0 | 0.004157 | 0.026674 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0004650 | RBH | 0.299945 | 0.155916 | 0.726088 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0057500 | RBH | 4.674411 | 8.770538 | 9.624166 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0004910 | RBH | 0.203770 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004750 | RBH | 0.618150 | 3.085561 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004760 | RBH | 0.886628 | 6.041668 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0004790 | RBH | 0.000000 | 0.281464 | 0.362027 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004660 | RBH | 0.217776 | 5.772801 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004540 | RBH | 0.368573 | 2.220984 | 1.138302 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
