Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_06g0004740 | OGI:06009560 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr06:3349805-3351328 | ||||||||
| Gene Symbol | SDRLK-66 | ||||||||||
| DNA seq | TCAGGCCTTGTCTCCCATTTTCTAACAACTGAAAACCCAACAATGATTAAAACCACTTCAATCAAAAGCAACGTTAACACAGAAGAAAGGAAGTAACCAAACTCGAAATTGGAAGTGACTTCCTCAAACATTTGTGATGAAGGGTAGGCTAACTTTTCTGTAACTCCACAAGAATGGGTTGGTCTAGAATCTGATTCTTCGCGAAACGGCACCCCCTTGGGAACTTTCAGATAGAGGTCATTGTAAGGATCTGGGAAGCGCCTGCCATTGAAAAGAGAGTACTTTGGATAACATTCACCAGTTCCCTTCCGGTAGCCGAAGGCTTGACAGTTATTGGCGGTGAGGCACATATTttctacagtttgagtatggtattaactgtgtgtaggcggtgtcatacccccagaagtcagttgcagtgatctttctgactgagaagtcctggctggtagagttgcttgtaatattatgtctattccctttatcccagattgctgttatgtccaccttgcgcttgcatcctttgctccagtcagtcggatcaatcacctcgaagccttggaggcaagaacaatggagttccgggatgtaattgcagacagcgtttgtgccacacactccatgcatttgacatactctagagaatgccatccAagaaactgaccagttgccactggtctcgtttaggctgtacagcctaagatttccatcgtaatccagtgtcaacctcctcatgacatgatcgccaagatcagaggcttcaaacttaaaaaggtcacttgatacaaaataacctgtctgatttagaacaccatatcgaagactgtcataagttgtccttccattcttccatggctggtcaaaggaaggatttggccaatatatgctggcagtgtctgggccgttgtagacgagagtcaaaatattgttactgtcgaagagaaagttgtagaagcctgaatatagcagccccctggcagatgcagataccagctttacattcctagttattggctgcaacggcagaagtgtatctgttggcgagtcgaagctcctccatagatgctggccttcaggatccatgacaataaggtttccattgttgagaagctctgctcggtcggctcgagtggctgttgtgttggtgctccataCaactttgccattgtagtcaagaagggccaaggtgccgtccttctggaaggtgagcctggaaccctttccgttcaccggagcatcgcggttcgccgtccaagcgaccgtcttctctgacgacctggagaaccagatggagaaggtgaatgcgttggtggccaccctgtagaatccgcaggagaagtcgccattgggggacactaggatggtggtggtgtcatcctgggttgaaatggatgaacgtctagcaatgaaggcttgggttgaaatggatgaacgtctagcaaggaagggttttctatgatttgcaagagcaattgttggcatgagaaggaagaatattgtggtgaaaatgtagacgcctctcat
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| CDS seq | atgagaggcgtctacattttcaccacaatattcttccttctcatgccaacaattgctcttgcaaatcatagaaaacccttccttgctagacgttcatccatttcaacccaagccttcattgctagacgttcatccatttcaacccaggatgacaccaccaccatcctagtgtcccccaatggcgacttctcctgcggattctacagggtggccaccaacgcattcaccttctccatctggttctccaggtcgtcagagaagacggtcgcttggacggcgaaccgcgatgctccggtgaacggaaagggttccaggctcaccttccagaaggacggcaccttggcccttcttgactacaatggcaaagttGtatggagcaccaacacaacagccactcgagccgaccgagcagagcttctcaacaatggaaaccttattgtcatggatcctgaaggccagcatctatggaggagcttcgactcgccaacagatacacttctgccgttgcagccaataactaggaatgtaaagctggtatctgcatctgccagggggctgctatattcaggcttctacaactttctcttcgacagtaacaatattttgactctcgtctacaacggcccagacactgccagcatatattggccaaatccttcctttgaccagccatggaagaatggaaggacaacttatgacagtcttcgatatggtgttctaaatcagacaggcttcgaggtgattgatccgactgactggagcaaaggatgcaagcgcaaggtggacataacagcaatctgggataaagggaatagacataatattacaagcaactctaccagccaggacttctcagtcagaaagatcactgcaactgacttctgggggtatgacaccgcctacacacaGCGCTTCCCAGATCCTTACAATGACCTCTATCTGAAAGTTCCCAAGGGGAAAATGGGAGACAAGGCCTGA
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| Protein seq | MRGVYIFTTIFFLLMPTIALANHRKPFLARRSSISTQAFIARRSSISTQDDTTTILVSPNGDFSCGFYRVATNAFTFSIWFSRSSEKTVAWTANRDAPVNGKGSRLTFQKDGTLALLDYNGKVVWSTNTTATRADRAELLNNGNLIVMDPEGQHLWRSFDSPTDTLLPLQPITRNVKLVSASARGLLYSGFYNFLFDSNNILTLVYNGPDTASIYWPNPSFDQPWKNGRTTYDSLRYGVLNQTGFEVIDPTDWSKGCKRKVDITAIWDKGNRHNITSNSTSQDFSVRKITATDFWGYDTAYTQRFPDPYNDLYLKVPKGKMGDKA |
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| Function | Putative receptor protein kinase ZmPK1 [UniProtKB/Swiss-Prot:P17801] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0004740 | OsNaBo_06g0004740.01 | Chr06 | 3349805 | 3351328 | - | NAM | ||
| CDS seq | atgagaggcgtctacattttcaccacaatattcttccttctcatgccaacaattgctcttgcaaatcatagaaaacccttccttgctagacgttcatccatttcaacccaagccttcattgctagacgttcatccatttcaacccaggatgacaccaccaccatcctagtgtcccccaatggcgacttctcctgcggattctacagggtggccaccaacgcattcaccttctccatctggttctccaggtcgtcagagaagacggtcgcttggacggcgaaccgcgatgctccggtgaacggaaagggttccaggctcaccttccagaaggacggcaccttggcccttcttgactacaatggcaaagttGtatggagcaccaacacaacagccactcgagccgaccgagcagagcttctcaacaatggaaaccttattgtcatggatcctgaaggccagcatctatggaggagcttcgactcgccaacagatacacttctgccgttgcagccaataactaggaatgtaaagctggtatctgcatctgccagggggctgctatattcaggcttctacaactttctcttcgacagtaacaatattttgactctcgtctacaacggcccagacactgccagcatatattggccaaatccttcctttgaccagccatggaagaatggaaggacaacttatgacagtcttcgatatggtgttctaaatcagacaggcttcgaggtgattgatccgactgactggagcaaaggatgcaagcgcaaggtggacataacagcaatctgggataaagggaatagacataatattacaagcaactctaccagccaggacttctcagtcagaaagatcactgcaactgacttctgggggtatgacaccgcctacacacaGCGCTTCCCAGATCCTTACAATGACCTCTATCTGAAAGTTCCCAAGGGGAAAATGGGAGACAAGGCCTGA
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| Protein seq | MRGVYIFTTIFFLLMPTIALANHRKPFLARRSSISTQAFIARRSSISTQDDTTTILVSPNGDFSCGFYRVATNAFTFSIWFSRSSEKTVAWTANRDAPVNGKGSRLTFQKDGTLALLDYNGKVVWSTNTTATRADRAELLNNGNLIVMDPEGQHLWRSFDSPTDTLLPLQPITRNVKLVSASARGLLYSGFYNFLFDSNNILTLVYNGPDTASIYWPNPSFDQPWKNGRTTYDSLRYGVLNQTGFEVIDPTDWSKGCKRKVDITAIWDKGNRHNITSNSTSQDFSVRKITATDFWGYDTAYTQRFPDPYNDLYLKVPKGKMGDKA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 1.488211 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0164900 | SBH | 0.271249 | 0.126373 | 0.427826 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g06930 | RBH | 0.119486 | 0.0 | 0.110131 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0164900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004800 | SBH | 0.0 | 0.365867 | 0.074983 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0004720 | RBH | 0.182826 | 0.0 | 0.259270 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004640 | RBH | 0.123807 | 1.757458 | 0.097482 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004820 | RBH | 0.007785 | 0.024405 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0004710 | RBH | 0.481704 | 0.0 | 1.605982 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0056800 | RBH | 0.515415 | 2.0876865 | 1.1919025 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0004580 | RBH | 0.0 | 0.0 | 0.100321 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0056600 | RBH | 0.7593265 | 1.4894935 | 2.6267715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0004830 | RBH | 0.033718 | 0.024727 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004660 | RBH | 0.053204 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004700 | SBH | 0.345692 | 1.719022 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0004710 | RBH | 0.050096 | 0.038929 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004580 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004480 | RBH | 0.074798 | 0.0 | 0.384964 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004720 | RBH | 0.636696 | 1.539949 | 2.768958 |
