Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_06g0003610 | OGI:06007270 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr06:2632123-2634591 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acggcccactggcccagcgagctgacccagagtgggctgggcttcttcttcgtcgtctcataccaatcgtgcggcggcggcggcggggatggcggcggcgttgcgcgggatcggagcgaagctggggaaggtgaaccacgagaaggtgacgagcgcgctgctgctgggctcattcgtggtgctggggtggcgttcgtgggagcagcagcacgagatcgacgagctggaggccaggaaggcgtcgctccgcgccgccaacaccgccatgtcctccgccatgtgggcgtggcgcgaggagctcttcgccctcgccgccgcgccctccccgcccatctccgcgtcccgcctccgcgtcatctacggggaggagcagccgcccgcctcgcccgcgtccaagaagccaggtgcgtgtgcttcactgctccagattcaacagatagtggtgttctactcatactattattataagggctaattatggtcatctaaacctaaattcaatccctggactgcaaaatcaaaggagtttttagagaaaactgcttttagctgtttatgatttggttgtgtatatgcaaatgtctatagcatcttaaggctgaggctgggctgagagcctgagatggtgttgtaatcatactgttaaaagaactaattacggtaacctaaacctagaatcgatctctggactgcaaaatctaaggcatttgtgagaaaactgctttaagctgtttatgatttggttgctatgcaaatgtgtgtagaatcttaagcctgagacctgaggctgggctgagagcctgagatgagatgatcctattatggaatgtgtttttaataataTtgctgatattttttcttTGtgtgtgtgtgggtgggtgggtgtggggggggggggtggggggtggggggtgggttgaataacattggtctcaaactctcaacttgcatctgcatctgcagatgcgccacactccccctgatcatcacttcacattgttctcacttataggatggccattggtctaaagagaaaatgtataaattccgctaggttggttcgaagtgccatttcaggaagaaaagtggttcaaagtgaaatttgctcccctcttttgtaacataatgaccctggagatgctgctgttcattttagggcatgtggataacaaaacaagcttagctagaatttgtgttgtagtcctctattgtgtttgtgttgtagtattatctggctgaaaatgtttgattagaagtagcaccataatgtttcattgcttcattgttcttagtgtttaggtcgttttattgttcactttgaacacatgtggtagtagcttaaaatactaccgtggaattttaattgtatgaaatatgtaggcttatttcgttcacaaacttggctaggtgttcggaatgtcaggtaccttgtagggtttttttggtatcattagcctggtgttggtgttgatatgcaaaaagaatgaatttgaacttatgttttctgtcataactctgaatttcccttgtgatccattatatgatgtccaaatttgcatcgccactaccttttatgatgaccttttaaaggaaggaacattattAaaaataggctattggcatcaactgtagcctgaagataactgtttgttttatggaaaagtttgtatttggtccctctactctttatttggtttagggactaaatatagaccttttgctttcttcgttgttgaggtgtttgtgggatactgttgaaatgatttgtttaactggactcaagcatatcataatatgcatataatggtgtgcgttgcctgtgacatattacacacccagaaaagagtcatattacacgttgtagtgcccttcaagggggattatggatatttgccttgaactttgaattaaactatttggttgccataatcatatcatcataccaatttaaatcgactagagtagaatggggaagtgaacacataactgtgtagtttgtatcatgcagttttattattgatagtcaatttatcttactggtaatgaaactattggcccttttcaatttgcaggagcagatgctgaggaggaaccatttgctattgcatgaactcttttctagtgtgccttagcattgtgaaatagcaatagagatccctgaaggtgatgatgtgtttttagataatcctgtataattttgcaccgagatgcaaaccgtttccagcttaaacacaagtaacagtgctgtcctaatacagcttttcaattctatatagtgagccaatgaggggtctgtattttctgatgtcaatgttgtcctctccttgcatatttgcaaacaggaccagcacttcgatggtttaaatgattgaatccgtacttatgcttgtcttgtttgtagttgtagaaatactgtttgaatccaagtggaagatggaatggaagactcggtatagttgttttatctgg
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| CDS seq | atggcggcggcgttgcgcgggatcggagcgaagctggggaaggtgaaccacgagaaggtgacgagcgcgctgctgctgggctcattcgtggtgctggggtggcgttcgtgggagcagcagcacgagatcgacgagctggaggccaggaaggcgtcgctccgcgccgccaacaccgccatgtcctccgccatgtgggcgtggcgcgaggagctcttcgccctcgccgccgcgccctccccgcccatctccgcgtcccgcctccgcgtcatctacggggaggagcagccgcccgcctcgcccgcgtccaagaagccaggagcagatgctgaggaggaaccatttgctattgcatga |
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| Protein seq | MAAALRGIGAKLGKVNHEKVTSALLLGSFVVLGWRSWEQQHEIDELEARKASLRAANTAMSSAMWAWREELFALAAAPSPPISASRLRVIYGEEQPPASPASKKPGADAEEEPFAIA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0003610 | OsNaBo_06g0003610.01 | Chr06 | 2632123 | 2634591 | + | NAM | ||
| CDS seq | atggcggcggcgttgcgcgggatcggagcgaagctggggaaggtgaaccacgagaaggtgacgagcgcgctgctgctgggctcattcgtggtgctggggtggcgttcgtgggagcagcagcacgagatcgacgagctggaggccaggaaggcgtcgctccgcgccgccaacaccgccatgtcctccgccatgtgggcgtggcgcgaggagctcttcgccctcgccgccgcgccctccccgcccatctccgcgtcccgcctccgcgtcatctacggggaggagcagccgcccgcctcgcccgcgtccaagaagccaggagcagatgctgaggaggaaccatttgctattgcatga
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| Protein seq | MAAALRGIGAKLGKVNHEKVTSALLLGSFVVLGWRSWEQQHEIDELEARKASLRAANTAMSSAMWAWREELFALAAAPSPPISASRLRVIYGEEQPPASPASKKPGADAEEEPFAIA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.758836 | 4.935148 | 1.959836 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0149500 | RBH | 3.726357 | 0.867474 | 10.595864 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g05670 | RBH | 2.504027 | 0.579761 | 2.710340 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0149500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0003720 | RBH | 0.197685 | 0.0 | 1.409486 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0003600 | RBH | 0.567176 | 0.0 | 1.808511 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0003550 | RBH | 0.516743 | 8.160243 | 3.819846 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0003650 | RBH | 0.084595 | 0.173540 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0003560 | RBH | 1.004702 | 19.979582 | 6.475546 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0042100 | RBH | 2.7620395 | 7.5615225 | 6.417073 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0003500 | RBH | 0.240686 | 0.398999 | 0.766448 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0044500 | RBH | 6.684855 | 8.7087995 | 11.309374 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0003690 | RBH | 0.155035 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0003530 | RBH | 0.549400 | 17.982489 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0003600 | RBH | 0.000000 | 11.936144 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0003570 | RBH | 0.000000 | 0.502826 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0003410 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G003420 | RBH | 0.000000 | 2.147411 | 0.429072 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
