Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_05g0025530 | OGI:05073720 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr05:28129081-28131173 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcagcggacgccgtacggtcggttccggcggcggcgagaactgcggcggcgggcggcggcagcggcggtcgcctcgcctttcgtcgcggagcctttaagcctttgtaggcgaaggggaggaaggaggacttcgtggtcgtagtaaacattttcatttggacttagtttcggcccataaaaatgatgggatacatttcggcccatatagttgatggggccacagttcagcccatataaatcatgggcttcgatttggtccacagttcagcccacagttcaactacccctttcacacccctctcctcccgttctcctctccatcctccttacagcagccggcgtcggcggcggcaggcgcgcggggcggcggcgtcggccggagcgcgggcggcggcggcgcgcgggcggctggaggcgcgcgggcgacgggacggcgcgcgtgcagcggccgcggcagcccgtgggctgacagccggcggcgggggcgggggcggggcgagcggtggcgcgcgggctgagcgccgacggcagcggtaggcggcggcggcggcggcagggcgacgcctactaggtgttcgacgaaatgccaacaaggaacgtggtggcgtggagctagccaatctagctaaagactttcacacccacttcagctcctataggagctagctctcactagagttggagttggagttggaaactgggagttggagtttggagctctactaaacggggccgtagctggaagtgcttgttgccttcagaactccgatgcccgccgccgccgccgccgcgagactgcgccgccgcggccaccgccggaagaagttcgtgtacagaccgaagccaccgccggagccgcacccattcctcctccacctcaagtcgctcccgtcccccgtcgccgccgcggccgcgctcctctccgcgccgaggcgcctccacgaccaccccttcgccgcctgcgtgctctaccgcctcgcccgcgcgcgcctcttcccgctcgtgcccccgctcctcgccgcgctgcactcccgcggcgcgccgctccgtcccaccgtgttcgccgccgtcatcgaccacctcggcgccgcttcctgccccgacgccgcggtcggcgtcttccgcaccgtcccggccttctgctcccactccgccgccacattccattccctcctcaacgcccttgtgtccaatggccgcacggatgccgcccgggacatgctcccgctcgccccgaagctcggcgtccgcctcaacgccgtgtcgtacaacatcatcctcaagggcgtgtgtctccgggacgggttcatgggcgcccgcggcgtgctcgacgaaatgctcagccagggtgtgcgaccgacggtggtcaccttcaacacgctggtggggtcggcgtgccgggagggtgagctgggcgcggcggagcggctcatcgacgagatggcgcgccgtggcgtggcgccaaacgcggccacctacgccctcctgatgcgggggctctgcgacgccgaccgccacgccgacgccgagaagctgatgttcgacatggagtaccgcgggtgccaggccgacgtggtgaactacggcgtgctgatgagctcccgcgcgaggcgcggcgacgccgacggcgtcagggagctcctctccgccatgcgcaagcggaagctcaagcccgacgacgcgagctacaacatcctgatcaggtgcctgtgcgacgccggcagggccgacgaggcgcacagggcgctgctcgagatgcagctcaggggcaccgtgccgggcgccgccacgtaccgcgtcctcgtcgacgggtgctgcagggctcgcgacttcgacctgggtctacgggtcttcaacgcgatgatggcgagcggacactgcccccaagctcgcaccttcaggcaccttgcgagagggctcggcgaggacggcaaggcggaggaggcgttcttcgtcttggagcagatggcgaggagggagatgagcttggatgcagatgggtggcaagctgttgtcacctgcgttcgcagcagctgcagcacccaggcaagtgagatcaagcttgtcaatgagttagtgttgtcaaattga
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| CDS seq | atgcagcggacgccgtacggtcgactgcgccgccgcggccaccgccggaagaagttcgtgtacagaccgaagccaccgccggagccgcacccattcctcctccacctcaagtcgctcccgtcccccgtcgccgccgcggccgcgctcctctccgcgccgaggcgcctccacgaccaccccttcgccgcctgcgtgctctaccgcctcgcccgcgcgcgcctcttcccgctcgtgcccccgctcctcgccgcgctgcactcccgcggcgcgccgctccgtcccaccgtgttcgccgccgtcatcgaccacctcggcgccgcttcctgccccgacgccgcggtcggcgtcttccgcaccgtcccggccttctgctcccactccgccgccacattccattccctcctcaacgcccttgtgtccaatggccgcacggatgccgcccgggacatgctcccgctcgccccgaagctcggcgtccgcctcaacgccgtgtcgtacaacatcatcctcaagggcgtgtgtctccgggacgggttcatgggcgcccgcggcgtgctcgacgaaatgctcagccagggtgtgcgaccgacggtggtcaccttcaacacgctggtggggtcggcgtgccgggagggtgagctgggcgcggcggagcggctcatcgacgagatggcgcgccgtggcgtggcgccaaacgcggccacctacgccctcctgatgcgggggctctgcgacgccgaccgccacgccgacgccgagaagctgatgttcgacatggagtaccgcgggtgccaggccgacgtggtgaactacggcgtgctgatgagctcccgcgcgaggcgcggcgacgccgacggcgtcagggagctcctctccgccatgcgcaagcggaagctcaagcccgacgacgcgagctacaacatcctgatcaggtgcctgtgcgacgccggcagggccgacgaggcgcacagggcgctgctcgagatgcagctcaggggcaccgtgccgggcgccgccacgtaccgcgtcctcgtcgacgggtgctgcagggctcgcgacttcgacctgggtctacgggtcttcaacgcgatgatggcgagcggacactgcccccaagctcgcaccttcaggcaccttgcgagagggctcggcgaggacggcaaggcggaggaggcgttcttcgtcttggagcagatggcgaggagggagatgagcttggatgcagatgggtggcaagctgttgtcacctgcgttcgcagcagctgcagcacccaggcaagtgagatcaagcttgtcaatgagttagtgttgtcaaattga
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| Protein seq | MQRTPYGRLRRRGHRRKKFVYRPKPPPEPHPFLLHLKSLPSPVAAAAALLSAPRRLHDHPFAACVLYRLARARLFPLVPPLLAALHSRGAPLRPTVFAAVIDHLGAASCPDAAVGVFRTVPAFCSHSAATFHSLLNALVSNGRTDAARDMLPLAPKLGVRLNAVSYNIILKGVCLRDGFMGARGVLDEMLSQGVRPTVVTFNTLVGSACREGELGAAERLIDEMARRGVAPNAATYALLMRGLCDADRHADAEKLMFDMEYRGCQADVVNYGVLMSSRARRGDADGVRELLSAMRKRKLKPDDASYNILIRCLCDAGRADEAHRALLEMQLRGTVPGAATYRVLVDGCCRARDFDLGLRVFNAMMASGHCPQARTFRHLARGLGEDGKAEEAFFVLEQMARREMSLDADGWQAVVTCVRSSCSTQASEIKLVNELVLSN |
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| Function | Pentatricopeptide repeat-containing protein At1g07740, mitochondrial [UniProtKB/Swiss-Prot:Q9LQQ1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0025530 | OsNaBo_05g0025530.01 | Chr05 | 28129081 | 28131173 | + | NAM | ||
| CDS seq | atgcagcggacgccgtacggtcgactgcgccgccgcggccaccgccggaagaagttcgtgtacagaccgaagccaccgccggagccgcacccattcctcctccacctcaagtcgctcccgtcccccgtcgccgccgcggccgcgctcctctccgcgccgaggcgcctccacgaccaccccttcgccgcctgcgtgctctaccgcctcgcccgcgcgcgcctcttcccgctcgtgcccccgctcctcgccgcgctgcactcccgcggcgcgccgctccgtcccaccgtgttcgccgccgtcatcgaccacctcggcgccgcttcctgccccgacgccgcggtcggcgtcttccgcaccgtcccggccttctgctcccactccgccgccacattccattccctcctcaacgcccttgtgtccaatggccgcacggatgccgcccgggacatgctcccgctcgccccgaagctcggcgtccgcctcaacgccgtgtcgtacaacatcatcctcaagggcgtgtgtctccgggacgggttcatgggcgcccgcggcgtgctcgacgaaatgctcagccagggtgtgcgaccgacggtggtcaccttcaacacgctggtggggtcggcgtgccgggagggtgagctgggcgcggcggagcggctcatcgacgagatggcgcgccgtggcgtggcgccaaacgcggccacctacgccctcctgatgcgggggctctgcgacgccgaccgccacgccgacgccgagaagctgatgttcgacatggagtaccgcgggtgccaggccgacgtggtgaactacggcgtgctgatgagctcccgcgcgaggcgcggcgacgccgacggcgtcagggagctcctctccgccatgcgcaagcggaagctcaagcccgacgacgcgagctacaacatcctgatcaggtgcctgtgcgacgccggcagggccgacgaggcgcacagggcgctgctcgagatgcagctcaggggcaccgtgccgggcgccgccacgtaccgcgtcctcgtcgacgggtgctgcagggctcgcgacttcgacctgggtctacgggtcttcaacgcgatgatggcgagcggacactgcccccaagctcgcaccttcaggcaccttgcgagagggctcggcgaggacggcaaggcggaggaggcgttcttcgtcttggagcagatggcgaggagggagatgagcttggatgcagatgggtggcaagctgttgtcacctgcgttcgcagcagctgcagcacccaggcaagtgagatcaagcttgtcaatgagttagtgttgtcaaattga
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| Protein seq | MQRTPYGRLRRRGHRRKKFVYRPKPPPEPHPFLLHLKSLPSPVAAAAALLSAPRRLHDHPFAACVLYRLARARLFPLVPPLLAALHSRGAPLRPTVFAAVIDHLGAASCPDAAVGVFRTVPAFCSHSAATFHSLLNALVSNGRTDAARDMLPLAPKLGVRLNAVSYNIILKGVCLRDGFMGARGVLDEMLSQGVRPTVVTFNTLVGSACREGELGAAERLIDEMARRGVAPNAATYALLMRGLCDADRHADAEKLMFDMEYRGCQADVVNYGVLMSSRARRGDADGVRELLSAMRKRKLKPDDASYNILIRCLCDAGRADEAHRALLEMQLRGTVPGAATYRVLVDGCCRARDFDLGLRVFNAMMASGHCPQARTFRHLARGLGEDGKAEEAFFVLEQMARREMSLDADGWQAVVTCVRSSCSTQASEIKLVNELVLSN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0548600 | RBH | 0.326642 | 0.357352 | 0.608762 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g47510 | RBH | 0.222728 | 0.242348 | 0.158010 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0548600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0025820 | RBH | 0.136183 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0025600 | RBH | 0.0 | 0.0 | 0.216610 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0025580 | RBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0025630 | RBH | 0.077282 | 0.044687 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0025600 | RBH | 0.000000 | 6.895890 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0422800 | RBH | 0.610802 | 1.9705645 | 1.1906085 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0025230 | RBH | 0.000000 | 0.121111 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0434700 | RBH | 1.3032715 | 3.545261 | 4.8539155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0025420 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0025330 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0025530 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0025530 | RBH | 0.211141 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0025570 | RBH | 0.0 | 1.050507 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G025010 | RBH | 0.000000 | 0.000000 | 0.535861 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0027800 | RBH | 0.0 | 0.0 | 0.887297 |
