Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_05g0021490 | OGI:05065220 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr05:24906395-24908935 | ||||||||
| Gene Symbol | CENH3, CENH3, CenH3 | ||||||||||
| DNA seq | atggaagaagcaggtgagaggaacccattattgcaatcaacacaacaattcctggttcacattttacaatcgactgtttgatgaaatcttgaattcgaccaatccgaatggagcaaaaggtaaatactaacatcaactgaattagaatgggaacgaagggtaagttgatccctatgtgaagatacatctacactactttctaaaatgttaatcaacgacacatgttgctccttgtccatcatgctgcatggctcgcaaacaaattttcaccatggcctccgcccaccgatacgcctggcaagttgcatgtccttttgcactgcagaacaaacgtttatttgttaaaccacacaatgacaacgctgataagctttacagggaatagcaagcagcatatttcacacctcaaaactcacaaaccaactaattctccctatgtttaatcaataatcatgataaatttaagagtatgaaaactagatatgacattaaatataaacacatgtattaagaatcatcctgcaattagaatgttattcctataaaaaaatataatgcttttgaagtggatgcgtatatgatatcatgtaggctgtggcatatatgatatccatttagcataataatataaagggagaaaaagaaagagaaaagttcattcagaatgacaacttactgatggtaacacgcttagcatggatggcgcagagatttgacacttcaaatatgtccactaagtggtattctgctgcctgcaggagagggaaaaccacaggaaatttgcaggacagcaagtaaataacataatttattttgtgagaattaagtcagctctttgttccttttcctggttatgcagaaacagacatggctggaaagaaggaactgaaattggtatactctatgatagcaatcttgaacagacacaacaaaatagggaggttgcatatttgtagtatataggtgttctactgaaaaaggataataatttagcaatctgactcataaatcaacacatagagatattcattttattgatcatggaagatttgtacatttttcagttacactcttgagccgtgacttgagtcttgaagcagaatggaatttaaacagtataattcagtctgacccttccctaactaagccatcagttgtaaacttataataaacaggtttgaccactgacctcttgcaatgcaaggagagcttcaagggtccaccgtgacacatcctttgaatagaaatcagtgatctccctgacctgcaaattttatcggcacaaaaagcttccatcacacaagtttgcactacgaaatatttgatatagagagaaggcaggttcaggatgtacccaccagccgagaaaatggtgcaaacgggatcagcagttcggtggttttctgaaatttcctgatctcccgcagtgccactgtgcctggacggaagcggtgtggcttcctctgcttcgtttgctgcctaggcgtccctgcttcacacacatgttaaagttatttaatcacaggagaacaaaaggagagcaattccaaagccaagacttccatatggatacctatcatctaggtagaacagacgctatttgaaccatgacactaaagaaagtttactaaatcagttcccacgatgcaaagactaataatggatgagcataaaaatcacctatcaacatcgtgtctaaaaaccacacatttcttggctagcaatgcttaataccatgttttatggtcataatgtttcagataacccctccatggaccaaactggatttgctattatttcagaatgaaaacaagaaaagctttgactgatgagcaattgaagatctttctgcaactactgttcttataatatattcagaaaacaacgatgaggaaagtacagcacacggtagaacagagcaagaaaagggacacattgagcccctcaggtcccccggaatccaagagacagaaaggaaaagctccaacgagcccatgaataaccctagaaacccccccaagagaacgcacctgaagccgatgttccagccgcgctcctctgcattccatcaaacaggtggtgagcaagccatccatccagccaagatacaaaacaaaaacatatccccccacaaaatcaaaaaatcaccaaacgaaagacccgctcccgcacgcaccgtggtcgccgaggtacccgtgccgcctgcaaaggggacaagcaagaggcgggaagggggggggggggggcataagcttcaccatccaccgccattgaaagaaaaaggaaaaaaaaaaaaagaaacgcagagggggagagagcgcgcgctcaccaccagcgcgctgcgccttcgacggccgaggggagcgctcgaactggagcttcttcttgggctccgccttcgacttcctcaccgccgggtgcttcgtgcgagccatctcggcggtcggcggcggcggcggcggcggcggcgacgtggcggtgggttttcaaactgaagcggcgtggaggcaaatgggagagggcttcttttggttttgggtt
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| CDS seq | atggctcgcacgaagcacccggcggtgaggaagtcgaaggcggagcccaagaagaagctccagttcgagcgctcccctcggccgtcgaaggcgcagcgcgctggtggcggcacgggtacctcggcgaccacgaggagcgcggctggaacatcggcttcagggacgcctaggcagcaaacgaagcagaggaagccacaccgcttccgtccaggcacagtggcactgcgggagatcaggaaatttcagaaaaccaccgaactgctgatcccgtttgcaccattttctcggctggtcagggagatcactgatttctattcaaaggatgtgtcacggtggacccttgaagctctccttgcattgcaagagtgcaaaaggacatgcaacttgccaggcgtatcggtgggcggaggccatggtgaaaatttgtttgcgagccatgcagcatga
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| Protein seq | MARTKHPAVRKSKAEPKKKLQFERSPRPSKAQRAGGGTGTSATTRSAAGTSASGTPRQQTKQRKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWTLEALLALQECKRTCNLPGVSVGGGHGENLFASHAA |
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| Function | Histone H3-1 (Fragment) [UniProtKB/Swiss-Prot:P81195] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0021490 | OsNaBo_05g0021490.01 | Chr05 | 24906409 | 24908897 | - | NAM | ||
| CDS seq | atggctcgcacgaagcacccggcggtgaggaagtcgaaggcggagcccaagaagaagctccagttcgagcgctcccctcggccgtcgaaggcgcagcgcgctggtggcggcacgggtacctcggcgaccacgaggagcgcggctggaacatcggcttcagggacgcctaggcagcaaacgaagcagaggaagccacaccgcttccgtccaggcacagtggcactgcgggagatcaggaaatttcagaaaaccaccgaactgctgatcccgtttgcaccattttctcggctggtcagggagatcactgatttctattcaaaggatgtgtcacggtggacccttgaagctctccttgcattgcaagagtgcaaaaggacatgcaacttgccaggcgtatcggtgggcggaggccatggtgaaaatttgtttgcgagccatgcagcatga
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| Protein seq | MARTKHPAVRKSKAEPKKKLQFERSPRPSKAQRAGGGTGTSATTRSAAGTSASGTPRQQTKQRKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWTLEALLALQECKRTCNLPGVSVGGGHGENLFASHAA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0021490 | OsNaBo_05g0021490.02 | Chr05 | 24906395 | 24908935 | - | IsoSeq | ||
| CDS seq | aacccaaaaccaaaagaagccctctcccatttgcctccacgccgcttcagtttgaaaacccaccgccacgtcgccgccgccgccgccgccgccgccgaccgccgagatggctcgcacgaagcacccggcggtgaggaagtcgaaggcggagcccaagaagaagctccagttcgagcgctcccctcggccgtcgaaggcgcagcgcgctggtggcggcacgggtacctcggcgaccacgaggagcgcggctggaacatcggcttcagggac
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| Protein seq | NPKPKEALSHLPPRRFSLKTHRHVAAAAAAAADRRDGSHEAPGGEEVEGGAQEEAPVRALPSAVEGAARWWRHGYLGDHEERGWNIGFRD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr05 | 24906713 | 24907584 | - | OsNaBo_05g0021490.02 | OsNaBo_05g0021490.01,OsNaBo_05g0021490.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0489800 | RBH | 0.0 | 0.0 | 3.614323 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g41080 | RBH | 0.0 | 0.0 | 0.872475 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0489800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0021680 | RBH | 0.0 | 3.117714 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0021640 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0021570 | RBH | 0.0 | 0.0 | 1.728364 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0021570 | RBH | 0.0 | 0.169371 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0021680 | RBH | 0.0 | 0.000000 | 1.491461 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0372900 | RBH | 2.528061 | 1.7426095 | 5.0796975 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0021230 | RBH | 0.000000 | 0.425972 | 0.347351 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0382700 | RBH | 2.6285125 | 1.280517 | 24.030494 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0021530 | RBH | 0.000000 | 0.079528 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0021450 | RBH | 0.0 | 4.088005 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0021560 | RBH | 0.000000 | 8.516017 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0021630 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0021610 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G021060 | RBH | 0.0 | 2.165745 | 1.298206 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0040590 | SBH | 0.0 | 57.808277 | 10.519984 |
