Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_05g0008320 | OGI:05021620 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr05:8005829-8007260 | ||||||||
| Gene Symbol | prx73 | ||||||||||
| DNA seq | tcaatggttgacgacgtcgcagcgcctcctgatctccccttcgtctccggtgagcaccccgctcatggcgagcttcacgaacgccgacgagaaggCccggaagaagcggcgcccgtccgccgcgaaccgccgcacgtgccccgccgtgcgcgcgtcggcggcctcctcggcgtcgacggcgaagatgccgcgcccggacgccgcgttccagtagtagaggttgtcgaaccagctcggcgtcgcgtcgctgaggacgggcacggccgccgccaccgcccgcggcgcggcggcggggcacgccagccggagcgccgcctcgaacgcggcgtcggagcgcccgcgcccgcgccgcgccgtgtcgacggttgcgcagtggccgccgccgagcgtgtggccgccgaggatggcgacggtctcctcgacggtcatgcccttgctctggaacatggcgagcgcgccgtcgatgccgaggaagctgtccgggagcatggcgtcggcgcgctccgcgctcgccgccgtggcgtccctccggccgaggggcacgccgcggatgcgcggcccgccggcgtgcgccacggccgacctcgccgcgaggacgacgatgtcggcgcacgacacctggccggggcacgcgcgctcgacggccgccttgacgaggccgatggtgctgacgtcacggatgccgaagttcttgtcggagccaagctccgacgtgatgttccgccgctcgtcggagttgagcagaatggacccgtcacatccctgaaaaaaaaactcactagtCcaaccttaaatctctgaaagctcatgAaaatttcggatctaaattttcataagtttcaggtttaccgacaggttctggtagtatgttctactggtaaaaaaattcaaattttactgaatttagcgaagaaattcaacaaaagTtttcgttcaaaatcaatttattttcctgaaatttcctcaaaatgtttatgcattttgagatagtaaaccatgcctcgaacatatgatcgactttataattacgattttacgtaggtagattttgatgatcactaatagaattcaataatttttataatctttttatgctgtgtgagtttttattagttcatatgtgctttTGgttattcaggtgtgaGTttttgttgagttagtgtaattattggctgtagctctttgagtaaaggccaggattatattccattatcttAAaaaaaaaacaacagtgtgtattggagacaaatatattgtcagtacgtacctgaacttggcagtcgtggaagaagaggcggaggagcgccgccggcgaggtctggtcgacagcaaacaccggcgcgagggccatgtcgacgacgagctccagctgggggcacgaccgccggtagtagtcgccggagaggccgccggcgccggcgccggccgccat
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| CDS seq | atggcggccggcgccggcgccggcggcctctccggcgactactaccggcggtcgtgcccccagctggagctcgtcgtcgacatggccctcgcgccggtgtttgctggatgtgacgggtccattctgctcaactccgacgagcggcggaacatcacgtcggagcttggctccgacaagaacttcggcatccgtgacgtcagcaccatcggcctcgtcaaggcggccgtcgagcgcgcgtgccccggccaggtgtcgtgcgccgacatcgtcgtcctcgcggcgaggtcggccgtggcgcacgccggcgggccgcgcatccgcggcgtgcccctcggccggagggacgccacggcggcgagcgcggagcgcgccgacgccatgctcccggacagcttcctcggcatcgacggcgcgctcgccatgttccagagcaagggcatgaccgtcgaggagaccgtcgccatcctcggcggccacacgctcggcggcggccactgcgcaaccgtcgacacggcgcggcgcgggcgcgggcgctccgacgccgcgttcgaggcggcgctccggctggcgtgccccgccgccgcgccgcgggcggtggcggcggccgtgcccgtcctcagcgacgcgacgccgagctggttcgacaacctctactactggaacgcggcgtccgggcgcggcatcttcgccgtcgacgccgaggaggccgccgacgcgcgcacggcggggcacgtgcggcggttcgcggcggacgggcgccgcttcttccggGccttctcgtcggcgttcgtgaagctcgccatgagcggggtgctcaccggagacgaaggggagatcaggaggcgctgcgacgtcgtcaaccattga
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| Protein seq | MAAGAGAGGLSGDYYRRSCPQLELVVDMALAPVFAGCDGSILLNSDERRNITSELGSDKNFGIRDVSTIGLVKAAVERACPGQVSCADIVVLAARSAVAHAGGPRIRGVPLGRRDATAASAERADAMLPDSFLGIDGALAMFQSKGMTVEETVAILGGHTLGGGHCATVDTARRGRGRSDAAFEAALRLACPAAAPRAVAAAVPVLSDATPSWFDNLYYWNAASGRGIFAVDAEEAADARTAGHVRRFAADGRRFFRAFSSAFVKLAMSGVLTGDEGEIRRRCDVVNH |
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| Function | Peroxidase 29 [UniProtKB/Swiss-Prot:Q9LSP0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0008320 | OsNaBo_05g0008320.01 | Chr05 | 8005829 | 8007260 | - | NAM | ||
| CDS seq | atggcggccggcgccggcgccggcggcctctccggcgactactaccggcggtcgtgcccccagctggagctcgtcgtcgacatggccctcgcgccggtgtttgctggatgtgacgggtccattctgctcaactccgacgagcggcggaacatcacgtcggagcttggctccgacaagaacttcggcatccgtgacgtcagcaccatcggcctcgtcaaggcggccgtcgagcgcgcgtgccccggccaggtgtcgtgcgccgacatcgtcgtcctcgcggcgaggtcggccgtggcgcacgccggcgggccgcgcatccgcggcgtgcccctcggccggagggacgccacggcggcgagcgcggagcgcgccgacgccatgctcccggacagcttcctcggcatcgacggcgcgctcgccatgttccagagcaagggcatgaccgtcgaggagaccgtcgccatcctcggcggccacacgctcggcggcggccactgcgcaaccgtcgacacggcgcggcgcgggcgcgggcgctccgacgccgcgttcgaggcggcgctccggctggcgtgccccgccgccgcgccgcgggcggtggcggcggccgtgcccgtcctcagcgacgcgacgccgagctggttcgacaacctctactactggaacgcggcgtccgggcgcggcatcttcgccgtcgacgccgaggaggccgccgacgcgcgcacggcggggcacgtgcggcggttcgcggcggacgggcgccgcttcttccggGccttctcgtcggcgttcgtgaagctcgccatgagcggggtgctcaccggagacgaaggggagatcaggaggcgctgcgacgtcgtcaaccattga
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| Protein seq | MAAGAGAGGLSGDYYRRSCPQLELVVDMALAPVFAGCDGSILLNSDERRNITSELGSDKNFGIRDVSTIGLVKAAVERACPGQVSCADIVVLAARSAVAHAGGPRIRGVPLGRRDATAASAERADAMLPDSFLGIDGALAMFQSKGMTVEETVAILGGHTLGGGHCATVDTARRGRGRSDAAFEAALRLACPAAAPRAVAAAVPVLSDATPSWFDNLYYWNAASGRGIFAVDAEEAADARTAGHVRRFAADGRRFFRAFSSAFVKLAMSGVLTGDEGEIRRRCDVVNH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0499300 | SBH | 0.000000 | 0.0 | 0.442997 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g14260 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0499300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0008210 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0008240 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0008130 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0008200 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0008290 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0121400 | RBH | 0.2168285 | 0.0185375 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0008140 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0120100 | RBH | 0.104996 | 0.0423765 | 0.0425565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0008180 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0008120 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0008220 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0008270 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0008250 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G008030 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
