Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_05g0007100 | OGI:05018040 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr05:6574309-6575712 | ||||||||
| Gene Symbol | DEK43, OsDEK43 | ||||||||||
| DNA seq | atgagcggcgccaccgccaagttctcttcctcctaccacctcgccgccgcgctccgccgcgagcccgacccggcggccgcgctccgcctcttcctcagccccaccccgaccgCcgccgccgggccatcctcctcccccgcgccgccgttccgctactccctccgctgctacgacatcatcgtctgcaagctcgccgccgcgcgcctcttcccggccatggagtccgtcctcgcccggctcccctcctcgctccgcccgcgcgagcccctcctgtgccgcgtcatctccgcgtacggccgcgcccgcctccccgccgccgcccgccgcgccttcgcgcacccggcgttcccggcgccgcgcaccgcccgcgCcctcaacacgctcctccacgccctcctcgcctgccgcgcgcccctcccggagctcctctccgagtgccgcggctccggcatccaccccgacgcgtgcacctacaacatcctaatgcgcgccgcggtggccgactctggctccgtcgacaacgcctgcctcctgttcgacgaaatgctgcagcgggggatcgccccgactgtcgtcacgtttggcaccctcgtcactgctttctgcgaggcaggacgtctagaggaggcattcaaggttaaggaggtgatgtctttgcagtacaacattaggccgaacgctcatgtgtatgcgagcctgatgaaggcgctctgcgagaaggggaaggtggatgatgcgcacagactcaAGGaggagatggtgagcaattcagaacctttggtggattcaggagcttatgcgacgctggcaagggcattgttccggttagggaagaaAGgagaggttgttagtttgctggaagagatgaaggaaaagggaatcaaggttggtagagaagtgcataattcgatgattgcaggGttttgcgaggatgaaggggatctggatgctgcatttgcagcgctcgatgacatgcagaagggtgggtgcaagccggactcggtgagctataatacactggttggtggtctatgcaagatggggcggtggcaggatgcaagtgagttGgttgaggatatgccacgaaggggatgccgtcctgatgtagtcacctacaggaggctgtttgatgggatttgtgatgctggggggttcagcgaggcgaggaGggttttcaatgagatggtattcaagggctttgcaccaagcaaggatggtgtgaggaaatttgttggatggattgagagggaaggagatgcggcgtcactggagtcagtgttgtgccaattggctagcgttaacgccttggaatcaagtgagtgggagaaggcaatgagtggtgtgctccatgatcctgcagagcagaagattgtgaagttgctggataatttgagcttggcttga
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| CDS seq | atgagcggcgccaccgccaagttctcttcctcctaccacctcgccgccgcgctccgccgcgagcccgacccggcggccgcgctccgcctcttcctcagccccaccccgaccgCcgccgccgggccatcctcctcccccgcgccgccgttccgctactccctccgctgctacgacatcatcgtctgcaagctcgccgccgcgcgcctcttcccggccatggagtccgtcctcgcccggctcccctcctcgctccgcccgcgcgagcccctcctgtgccgcgtcatctccgcgtacggccgcgcccgcctccccgccgccgcccgccgcgccttcgcgcacccggcgttcccggcgccgcgcaccgcccgcgCcctcaacacgctcctccacgccctcctcgcctgccgcgcgcccctcccggagctcctctccgagtgccgcggctccggcatccaccccgacgcgtgcacctacaacatcctaatgcgcgccgcggtggccgactctggctccgtcgacaacgcctgcctcctgttcgacgaaatgctgcagcgggggatcgccccgactgtcgtcacgtttggcaccctcgtcactgctttctgcgaggcaggacgtctagaggaggcattcaaggttaaggaggtgatgtctttgcagtacaacattaggccgaacgctcatgtgtatgcgagcctgatgaaggcgctctgcgagaaggggaaggtggatgatgcgcacagactcaAGGaggagatggtgagcaattcagaacctttggtggattcaggagcttatgcgacgctggcaagggcattgttccggttagggaagaaAGgagaggttgttagtttgctggaagagatgaaggaaaagggaatcaaggttggtagagaagtgcataattcgatgattgcaggGttttgcgaggatgaaggggatctggatgctgcatttgcagcgctcgatgacatgcagaagggtgggtgcaagccggactcggtgagctataatacactggttggtggtctatgcaagatggggcggtggcaggatgcaagtgagttGgttgaggatatgccacgaaggggatgccgtcctgatgtagtcacctacaggaggctgtttgatgggatttgtgatgctggggggttcagcgaggcgaggaGggttttcaatgagatggtattcaagggctttgcaccaagcaaggatggtgtgaggaaatttgttggatggattgagagggaaggagatgcggcgtcactggagtcagtgttgtgccaattggctagcgttaacgccttggaatcaagtgagtgggagaaggcaatgagtggtgtgctccatgatcctgcagagcagaagattgtgaagttgctggataatttgagcttggcttga
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| Protein seq | MSGATAKFSSSYHLAAALRREPDPAAALRLFLSPTPTAAAGPSSSPAPPFRYSLRCYDIIVCKLAAARLFPAMESVLARLPSSLRPREPLLCRVISAYGRARLPAAARRAFAHPAFPAPRTARALNTLLHALLACRAPLPELLSECRGSGIHPDACTYNILMRAAVADSGSVDNACLLFDEMLQRGIAPTVVTFGTLVTAFCEAGRLEEAFKVKEVMSLQYNIRPNAHVYASLMKALCEKGKVDDAHRLKEEMVSNSEPLVDSGAYATLARALFRLGKKGEVVSLLEEMKEKGIKVGREVHNSMIAGFCEDEGDLDAAFAALDDMQKGGCKPDSVSYNTLVGGLCKMGRWQDASELVEDMPRRGCRPDVVTYRRLFDGICDAGGFSEARRVFNEMVFKGFAPSKDGVRKFVGWIEREGDAASLESVLCQLASVNALESSEWEKAMSGVLHDPAEQKIVKLLDNLSLA |
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| Function | Putative pentatricopeptide repeat-containing protein At1g53330 [UniProtKB/Swiss-Prot:Q9MAG8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0007100 | OsNaBo_05g0007100.01 | Chr05 | 6574309 | 6575712 | + | NAM | ||
| CDS seq | atgagcggcgccaccgccaagttctcttcctcctaccacctcgccgccgcgctccgccgcgagcccgacccggcggccgcgctccgcctcttcctcagccccaccccgaccgCcgccgccgggccatcctcctcccccgcgccgccgttccgctactccctccgctgctacgacatcatcgtctgcaagctcgccgccgcgcgcctcttcccggccatggagtccgtcctcgcccggctcccctcctcgctccgcccgcgcgagcccctcctgtgccgcgtcatctccgcgtacggccgcgcccgcctccccgccgccgcccgccgcgccttcgcgcacccggcgttcccggcgccgcgcaccgcccgcgCcctcaacacgctcctccacgccctcctcgcctgccgcgcgcccctcccggagctcctctccgagtgccgcggctccggcatccaccccgacgcgtgcacctacaacatcctaatgcgcgccgcggtggccgactctggctccgtcgacaacgcctgcctcctgttcgacgaaatgctgcagcgggggatcgccccgactgtcgtcacgtttggcaccctcgtcactgctttctgcgaggcaggacgtctagaggaggcattcaaggttaaggaggtgatgtctttgcagtacaacattaggccgaacgctcatgtgtatgcgagcctgatgaaggcgctctgcgagaaggggaaggtggatgatgcgcacagactcaAGGaggagatggtgagcaattcagaacctttggtggattcaggagcttatgcgacgctggcaagggcattgttccggttagggaagaaAGgagaggttgttagtttgctggaagagatgaaggaaaagggaatcaaggttggtagagaagtgcataattcgatgattgcaggGttttgcgaggatgaaggggatctggatgctgcatttgcagcgctcgatgacatgcagaagggtgggtgcaagccggactcggtgagctataatacactggttggtggtctatgcaagatggggcggtggcaggatgcaagtgagttGgttgaggatatgccacgaaggggatgccgtcctgatgtagtcacctacaggaggctgtttgatgggatttgtgatgctggggggttcagcgaggcgaggaGggttttcaatgagatggtattcaagggctttgcaccaagcaaggatggtgtgaggaaatttgttggatggattgagagggaaggagatgcggcgtcactggagtcagtgttgtgccaattggctagcgttaacgccttggaatcaagtgagtgggagaaggcaatgagtggtgtgctccatgatcctgcagagcagaagattgtgaagttgctggataatttgagcttggcttga
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| Protein seq | MSGATAKFSSSYHLAAALRREPDPAAALRLFLSPTPTAAAGPSSSPAPPFRYSLRCYDIIVCKLAAARLFPAMESVLARLPSSLRPREPLLCRVISAYGRARLPAAARRAFAHPAFPAPRTARALNTLLHALLACRAPLPELLSECRGSGIHPDACTYNILMRAAVADSGSVDNACLLFDEMLQRGIAPTVVTFGTLVTAFCEAGRLEEAFKVKEVMSLQYNIRPNAHVYASLMKALCEKGKVDDAHRLKEEMVSNSEPLVDSGAYATLARALFRLGKKGEVVSLLEEMKEKGIKVGREVHNSMIAGFCEDEGDLDAAFAALDDMQKGGCKPDSVSYNTLVGGLCKMGRWQDASELVEDMPRRGCRPDVVTYRRLFDGICDAGGFSEARRVFNEMVFKGFAPSKDGVRKFVGWIEREGDAASLESVLCQLASVNALESSEWEKAMSGVLHDPAEQKIVKLLDNLSLA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.031469 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0207200 | RBH | 0.315686 | 0.344870 | 0.410962 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g11700 | RBH | 0.252180 | 0.283499 | 0.129299 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0207200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0007040 | RBH | 0.0 | 0.0 | 0.889967 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0007090 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0006980 | RBH | 0.000000 | 0.0 | 1.360085 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0007030 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0007130 | RBH | 0.680235 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0099600 | RBH | 0.3522605 | 0.198967 | 0.517774 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0006970 | RBH | 0.034457 | 0.114243 | 0.087490 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0098600 | RBH | 0.3897185 | 0.265934 | 2.0480285 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0007030 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0006960 | RBH | 0.129915 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0007040 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0007130 | RBH | 0.0 | 0.170034 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0007080 | RBH | 0.084093 | 1.648271 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G006850 | RBH | 0.111669 | 0.604128 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0006680 | RBH | 0.784220 | 0.000000 | 1.998016 |
