Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_05g0006380 | OGI:05016260 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr05:5575290-5577540 | ||||||||
| Gene Symbol | C3H35, OsC3H35, OsTZF1, OsCCCH-Zn-3 | ||||||||||
| DNA seq | atacatgcttaataatccattaattcattcataagcagtactagatcagtaggtaaacaacaataacattgatgatcaaaatacagagcaataatatgttgccggatcgatcccatcttgatgagaaacaaaatgaacaaaaaaaaagaggaacAatagtgatgataataatggaggtgctagctgaaccatcggctggctataCcatccgacgaaaacgagcttaaattcttcagacttaattaacagcaataacaaTaataatcatcatgacgacgttctggaatcgcagaaactggcgcagaatccggccaaaccaccaccttcttgttcttcatcttcatcatcgccgttgttgtgatcagatcatcagatcatgctctatgcatgcttcatctctccacaagatctcaagtaaaaatacacacttgacacacacactatgtacaaaacaagatttaaccacatatcttgatccatttctgatcttcttcttcttcttgtactgcagctgcagccatggccaccaccatctggactgaactgaactgaactgagaaaaaccccAaaacaaatcctgcctttgcctttgcctgcctCcctggCccccccaacatccatccaagaataTtcacataggatggtagatgatgatgatgaacatatgtacaaggattaggagaatctaacaagCAagaaactaaaataaaaaaataatagaatttttttggttggaaaaacttttccattttcttttttttttccttctcttcctgctaccttctgcttccactatggaggcatgaggaaaattcttactcagccatggctgccgccTtgttgggtttgctcagttgatgaggtcggatacccagccgacgtcgggcgcgacgccggcggcggcggcggcggcgtcggtggacacggtggcttcTttgctgagacgctcgaacaccttctcccGgagagctctcccggactccaccctctccatgggttgctcctcctcgatgagcccgaggtcgagcggctcgacggtgacggtggcgccggaggcggtggtgaccgtcaccggcgatggccttgtcGgggtggacgggaggctgtagagcgccgcggcggcggcggcggcggcggcgggggatttgggggagccgtactggtagccggcggggaggaaggaggcgcacgacggcgccgacctcggggagccgaggcggagctggcggagcgagacgagcacgtcgttgaccGGggagccgactcctgcccacgcgccgcgacggagcgcgccggcggcgtcgggcgacaatggcggggactcggacggcggcgacctcggcGgggagacgagcgtgctggtgggcgacgacgacatgatgctcttggtgAggtagctctcgaacgcctggcgccggagcggcgagccgtcgtaggactcggcgagcggggacgccgcggcgcccgcgccgccgccgccgcaacccctcgggctgttcgagccctgctgctgcgagggcgggaggacgcggagCtggtcgggggtgtgggcgaagaagcagacgcggcggcggcaggcggtgccgtccttgcagggctgcgtccggtagcgcgccgggtggagccagcactcgaacaCcccgtgcgcgaactcgcaggcgtcgccgcgcttgcacccgcccttgcggaagtccgggcacgccgtgccggagtagcagtaccgcctggggtccctccgccgcgccttctcccccgggtgcgcgaaggggcactccgtccagtcatggctccgcccgcgcgcgcaccgccgcaccttgaactcgtacatcctgaactcatcgcacgcgtacgcgtccaccgccgccgccaccgccgcggcctcctcctcatcctccgccgccgccgcctcgttcgacggCaggtaatgccgcagcgcgtcgagcaggtggtacggcgcggccaccacctcgctctccctcccacctcctccctccacgccgctcaCcggcgacgccacgtgctgctgccacggcggcgcgtgcgcgccctcacccatcaTCatcatcttgctctctaactcctctcctcttctccaactcctgcgaggcaaggtgttcgtccgaagtcgctgccgtgatccgccgtggtgaagaggaGgggaagaggaggcgcggctatataaatcagagaggccccctccgctaaccgcggttgggttaaccctcgcggtgtcgcgacgcttccgaaccat
More
|
||||||||||
| CDS seq | atggttcggaagcgtcgcgacaccgcgagggttaacccaaccgcggttagcggagggggcctctctgatttatatagccgcgcctcctcttcccCtcctcttcaccacggcggatcacggcagcgacttcggacgaacaccttgcctcgcaggagttggagaagaggagaggagttagagagcaagatgatGAtgatgggtgagggcgcgcacgcgccgccgtggcagcagcacgtggcgtcgccgGtgagcggcgtggagggaggaggtgggagggagagcgaggtggtggccgcgccgtaccacctgctcgacgcgctgcggcattacctGccgtcgccgccgtccgagtccccgccattgtcgcccgacgccgccggcgcgctccgtcgcggcgcgtgggcaggagtcggctccCCggtcaacgacgtgctcgtctcgctccgccagctccgcctcggctccccgaggtcggcgccgtcgtgcgcctccttcctccccgccggctaccagtacggctcccccaaatcccccgccgccgccgccgccgccgccgcggcgctctacagcctcccgtccacccCgacaaggccatcgccggtgacggtcaccaccgcctccggcgccaccgtcaccgtcgagccgctcgacctcgggctcatcgaggaggagcaacccatggagagggtggagtccgggagagctctcCgggagaaggtgttcgagcgtctcagcaaAgaagccaccgtgtccaccgacgccgccgccgccgccgccggcgtcgcgcccgacgtcggctgggtatccgacctcatcaactga
More
|
||||||||||
| Protein seq | MVRKRRDTARVNPTAVSGGGLSDLYSRASSSPPLHHGGSRQRLRTNTLPRRSWRRGEELESKMMMMGEGAHAPPWQQHVASPVSGVEGGGGRESEVVAAPYHLLDALRHYLPSPPSESPPLSPDAAGALRRGAWAGVGSPVNDVLVSLRQLRLGSPRSAPSCASFLPAGYQYGSPKSPAAAAAAAAALYSLPSTPTRPSPVTVTTASGATVTVEPLDLGLIEEEQPMERVESGRALREKVFERLSKEATVSTDAAAAAAGVAPDVGWVSDLIN |
||||||||||
| Function | Zinc finger CCCH domain-containing protein 35 [UniProtKB/Swiss-Prot:Q6L4N4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0006380 | OsNaBo_05g0006380.01 | Chr05 | 5576140 | 5577540 | - | NAM | ||
| CDS seq | atggttcggaagcgtcgcgacaccgcgagggttaacccaaccgcggttagcggagggggcctctctgatttatatagccgcgcctcctcttcccCtcctcttcaccacggcggatcacggcagcgacttcggacgaacaccttgcctcgcaggagttggagaagaggagaggagttagagagcaagatgatGAtgatgggtgagggcgcgcacgcgccgccgtggcagcagcacgtggcgtcgccgGtgagcggcgtggagggaggaggtgggagggagagcgaggtggtggccgcgccgtaccacctgctcgacgcgctgcggcattacctGccgtcgccgccgtccgagtccccgccattgtcgcccgacgccgccggcgcgctccgtcgcggcgcgtgggcaggagtcggctccCCggtcaacgacgtgctcgtctcgctccgccagctccgcctcggctccccgaggtcggcgccgtcgtgcgcctccttcctccccgccggctaccagtacggctcccccaaatcccccgccgccgccgccgccgccgccgcggcgctctacagcctcccgtccacccCgacaaggccatcgccggtgacggtcaccaccgcctccggcgccaccgtcaccgtcgagccgctcgacctcgggctcatcgaggaggagcaacccatggagagggtggagtccgggagagctctcCgggagaaggtgttcgagcgtctcagcaaAgaagccaccgtgtccaccgacgccgccgccgccgccgccggcgtcgcgcccgacgtcggctgggtatccgacctcatcaactga
More
|
|||||||
| Protein seq | MVRKRRDTARVNPTAVSGGGLSDLYSRASSSPPLHHGGSRQRLRTNTLPRRSWRRGEELESKMMMMGEGAHAPPWQQHVASPVSGVEGGGGRESEVVAAPYHLLDALRHYLPSPPSESPPLSPDAAGALRRGAWAGVGSPVNDVLVSLRQLRLGSPRSAPSCASFLPAGYQYGSPKSPAAAAAAAAALYSLPSTPTRPSPVTVTTASGATVTVEPLDLGLIEEEQPMERVESGRALREKVFERLSKEATVSTDAAAAAAGVAPDVGWVSDLIN
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0006380 | OsNaBo_05g0006380.02 | Chr05 | 5575290 | 5577437 | - | IsoSeq | ||
| CDS seq | atgaggaggaggccgcggcggtggcggcggcggtggacgcgtacgcgtgcgatgagttcaggatgtacgagttcaaggtgcggcggtgcgcgcgcgggcggagccatgactggacggagtgccccttcgcgcacccgggggagaaggcgcggcggagggaccccaggcggtactgctactccggcacggcgtgcccggacttccgcaagggcgggtgcaagcgcggcgacgcctgcgagttcgcgcacgggGtgttcgagtgctggctccacccggcgcgctaccggacgcagccctgcaaggacggcaccgcctgccgccgccgcgtctgcttcttcgcccacacccccgaccaGctccgcgtcctcccgccctcgcagcagcagggctcgaacagcccgaggggttgcggcggcggcggcgcgggcgccgcggcgtccccgctcgccgagtcctacgacggctcgccgctccggcgccaggcgttcgagagctaccTcaccaagagcatcatgtcgtcgtcgcccaccagcacgctcgtctcccCgccgaggtcgccgccgtccgagtccccgccattgtcgcccgacgccgccggcgcgctccgtcgcggcgcgtgggcaggagtcggctccCCggtcaacgacgtgctcgtctcgctccgccagctccgcctcggctccccgaggtcggcgccgtcgtgcgcctccttcctccccgccggctaccagtacggctcccccaaatcccccgccgccgccgccgccgccgccgcggcgctctacagcctcccgtccacccCgacaaggccatcgc
More
|
|||||||
| Protein seq | MRRRPRRWRRRWTRTRAMSSGCTSSRCGGARAGGAMTGRSAPSRTRGRRRGGGTPGGTATPARRARTSARAGASAATPASSRTGCSSAGSTRRATGRSPARTAPPAAAASASSPTPPTSSASSRPRSSRARTARGVAAAAARAPRRPRSPSPTTARRSGARRSRATSPRASCRRRPPARSSPRRGRRRPSPRHCRPTPPARSVAARGQESAPRSTTCSSRSASSASAPRGRRRRAPPSSPPATSTAPPNPPPPPPPPPRRSTASRPPRQGHR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.879143 | 16.556973 | 10.667257 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0195200 | RBH | 0.519155 | 0.996099 | 1.766845 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g10670 | RBH | 0.581733 | 1.100580 | 0.751742 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0195200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0006310 | RBH | 0.992593 | 0.763076 | 4.695311 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0006370 | RBH | 0.326434 | 0.0 | 0.941599 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0006260 | RBH | 5.985014 | 0.0 | 9.449127 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0006310 | RBH | 0.439721 | 0.073116 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0088400 | RBH | 13.5107015 | 42.8105165 | 388.4332425 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0006200 | RBH | 0.368847 | 0.604848 | 1.570261 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0087500 | RBH | 22.8263345 | 41.038532 | 54.2217715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0006300 | RBH | 0.213799 | 0.000580 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0006240 | RBH | 1.251407 | 10.890372 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0006320 | RBH | 12.931417 | 6.010703 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0006390 | RBH | 1.298902 | 0.575957 | 3.328057 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0006360 | RBH | 0.406801 | 1.004104 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G006140 | RBH | 0.381440 | 0.646387 | 0.360349 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0006370 | RBH | 2.011729 | 110.064621 | 32.828682 |
