Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_05g0004820 | OGI:05010250 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr05:3813825-3814337 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgggcaacagcctgagatgctgcctagcttgcgtcctcccctgcggcgccctcgacctgatcaGgatcgtccacctcaacggccgcgtcgaggagtacggccgcccggtcgccgccggcgagatcctcgccgccaaccccAaccacgtcctcagcaagccgtgctgctcccagggcggcgccgtcgccgtgcgcaggacgatcctcatcgtctcgccggactccgagctggagcgcggcgagatctacttcctcatcccggcctcctccgtgccggacaagaagaagaagagcggcggcggcgccgccgcggcgacgccggcggcgagcggccgccacggcaagagcaagcaggcggcgccgtcgtcggatcacGggggcaatggccgtcgtcacgtgcgcgacgtgtcgtcggagaagaggtcgtcgtcgttgcaccggcggcgcatgagcgccggcagccggacggcggcgtggaggccacacctcgagtgcatcgtagaGgacacttga
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| CDS seq | atgggcaacagcctgagatgctgcctagcttgcgtcctcccctgcggcgccctcgacctgatcaGgatcgtccacctcaacggccgcgtcgaggagtacggccgcccggtcgccgccggcgagatcctcgccgccaaccccAaccacgtcctcagcaagccgtgctgctcccagggcggcgccgtcgccgtgcgcaggacgatcctcatcgtctcgccggactccgagctggagcgcggcgagatctacttcctcatcccggcctcctccgtgccggacaagaagaagaagagcggcggcggcgccgccgcggcgacgccggcggcgagcggccgccacggcaagagcaagcaggcggcgccgtcgtcggatcacGggggcaatggccgtcgtcacgtgcgcgacgtgtcgtcggagaagaggtcgtcgtcgttgcaccggcggcgcatgagcgccggcagccggacggcggcgtggaggccacacctcgagtgcatcgtagaGgacacttga
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| Protein seq | MGNSLRCCLACVLPCGALDLIRIVHLNGRVEEYGRPVAAGEILAANPNHVLSKPCCSQGGAVAVRRTILIVSPDSELERGEIYFLIPASSVPDKKKKSGGGAAAATPAASGRHGKSKQAAPSSDHGGNGRRHVRDVSSEKRSSSLHRRRMSAGSRTAAWRPHLECIVEDT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0004820 | OsNaBo_05g0004820.01 | Chr05 | 3813825 | 3814337 | + | NAM | ||
| CDS seq | atgggcaacagcctgagatgctgcctagcttgcgtcctcccctgcggcgccctcgacctgatcaGgatcgtccacctcaacggccgcgtcgaggagtacggccgcccggtcgccgccggcgagatcctcgccgccaaccccAaccacgtcctcagcaagccgtgctgctcccagggcggcgccgtcgccgtgcgcaggacgatcctcatcgtctcgccggactccgagctggagcgcggcgagatctacttcctcatcccggcctcctccgtgccggacaagaagaagaagagcggcggcggcgccgccgcggcgacgccggcggcgagcggccgccacggcaagagcaagcaggcggcgccgtcgtcggatcacGggggcaatggccgtcgtcacgtgcgcgacgtgtcgtcggagaagaggtcgtcgtcgttgcaccggcggcgcatgagcgccggcagccggacggcggcgtggaggccacacctcgagtgcatcgtagaGgacacttga
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| Protein seq | MGNSLRCCLACVLPCGALDLIRIVHLNGRVEEYGRPVAAGEILAANPNHVLSKPCCSQGGAVAVRRTILIVSPDSELERGEIYFLIPASSVPDKKKKSGGGAAAATPAASGRHGKSKQAAPSSDHGGNGRRHVRDVSSEKRSSSLHRRRMSAGSRTAAWRPHLECIVEDT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 3.317042 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0165200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g07240 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0165200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0004620 | RBH | 0.0 | 19.749683 | 0.986562 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0004670 | RBH | 0.0 | 3.526239 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0004550 | RBH | 0.0 | 31.990067 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0004640 | RBH | 0.131188 | 0.199508 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0004720 | RBH | 0.0 | 14.554514 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0054700 | RBH | 0.4750515 | 2.795711 | 0.1252325 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0004490 | RBH | 0.0 | 2.743590 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0055500 | RBH | 0.404495 | 0.1350915 | 0.089036 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0004630 | RBH | 0.0 | 0.486268 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0004550 | RBH | 0.0 | 11.407431 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0004640 | RBH | 0.0 | 11.452579 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0004660 | RBH | 0.0 | 1.781294 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0004710 | RBH | 0.0 | 7.795904 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G004600 | RBH | 0.0 | 0.0 | 0.877225 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0004440 | RBH | 0.0 | 1.452026 | 0.0 |
