Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_05g0004010 | OGI:01011440 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr05:3117465-3121307 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggataaacaagtgaagaaccacagaccttctgatggtacggatggatcaaggtatgttgttctgtttcagtgatttatttcagtatgtgccgctggtttttttttctctgaatttcgccgtgtgaacttgagcaattctaaatcatcaaatcagggaaattcttatggacgagcgcaaccctaccatggacatagtagatggtattagtcaatctgtccatgattcacaaccggatggtggtcagtcaaggttggatcgtagcttccgtgaatttaaaactctgtaaatggtagccagattctgacacatcttgattgtgttatgaagccgtgtagcaatggaggaggacgtgccgtcgcgggttggctcacatgattcagggcatggaattccagagactaaggtatgtgcatggctaggtgtcatctgagcattcactttaaagcagtatatactacatagaaatgttcagtatgtgtcacatgagaaagttcagtatatgctatcttctaggaaagttcagtatgtatcacatagagaagttcagtatgtgctatattgcagaggagttcagtatgttgcacagaaaattcagaacatactatatgctgtcgtataacaaagttcagtacatagcctcccatagAaaaaATTCAGTATATATGTGAAAAATTCAGTAAATACTGGTGCGTATCAAAGTTCAGACTACGAATCACTATGGAAAGATTTAGTATACATGTGGAAAATGCAGTATATGCTATCGTCTAGAGAAATTCAGTACGTAACCCATAGAAAAATTCAGTACATACTATCATTCAACATAAATCAGAAAGAACCCCTCCATTTTAAAAAATGAGTATATACAATCATCTAACAAAGTTCAGAACAAAGCTCCCCATATTTTTTTGTTAGTAGTACAACATATATTTTTTTTAAATTTGCAGTAAGTACTGATTATAAATTAGGTTGTTTTTTGTAAACTACATTTTCAGTTAGTAGTAGTATATGCTATTTTTAAATATAGTGTCTCCAATACAGAAATTTGGTCCCTTCACTGGATTGGACAGAAGGAAACCCATATGAAAAAGAAGGAGCTGGGATACCGATGGAAAGGTTTGTATCAGCATGTTACGGATTTTTACGATTTTTTTTGAGCCAGGATATTGGTGGTATTTTCTGAAAACTGATTGTACATTTTCTTTTCAGAATGGTGGTAGATAATGTTGATAGCAGTGCTGTCATACCTCCTGAGTATGCTGATCCTCAAATTCTTACTCCGATGCTAGGACAAAGATTTAAGACTGAGAGGGATGCCTATAATTTTTATAATGTTTATGCTGTTAGTAAAGGATTTGGGATACGACTGGACAAAGGTCGCATGAATACTAAAAAGCAGAGAACAATGCGGCAAATATGTTGTTCTCACCAGGTACATACATTATGTAACAATATCTTAGTAGCAGAAaatttacctaaataaagacttgacgtactatgtgttaatttcgaaatcttttatgcaggggaggaacccaaaaaccaagaagccttccgttcgaattgggtgcccagcaatgatgaagataaataggtctggagctggtagtggctggtcagtaacaaaggttgtttctgcgcacaaccatcctatgaaaaaaagtgtaggagttactaagaattatcagtcgcacaatcaaatagatgaggggactcgtggtattattgaagagatggtagacagtagtatgagtcttacaaatatgtatggtatgttgtctgggatgcatggcggaccttccatggttccattcacgagaaaagctatggataggcttgcttatgcaattaggcgggatgagagcagcgatgacatgcaaaaaacacttgatgtcttgaaggatttgcaaaaaaggagcaagaatttcttttatagtatacaagttgacgaggcttgccgtgtgaagaacataTtttggtctcatgctgtgtccagattgaactttgagcattttggtgatgtcatcacatttgatactacctacaaaacaaacaagtataatatgcccTttgcaccatttgttggtgtaaacaatcactttcagagcactttctttggttgtgccctgcttagagaagagactgaagaatcatttacatggttattcaatacattcaaagagtgcatgaatgggaaggttcctattggaataTtaacaggtatgtgagtatttggccgaatttataatttggaatgaattcgttatactttacttattttaagtatatgatGggttattcattggatgcttattattgtccttaattttgcagacaattgtccttccatggcagctgccattagaacagtatttcccaatacaatccatcgtgtgtgcaagtggcatgtactgaagaaagcAaaggaatttatggggaacatatactccaagcgtcatacattcaagaaagcatttcataaggttcttacgcagacactaacagaggaggagtttgttgcggcttggcacaaactgattagagattataatctggaaaaaagtgtttacttgcgtcacatatgggacataaggcgtaaatgggcaTttgtatatttttcccataggttctttgctgggatgactactacacagagaagtgagtctgcaaaccatgtgtttaagatgtttgtgtcaccctctagctctatgaatggctttgttaagaggtacgaccgtttttcaatgagaagctgcaaaaagaggactcggaggaattccaaaccagtaatgtaagtatccactgtgataggtttgttgacctctttttggatatgtgtaatcaacatttggtgtcgcttggtgcaggacaaggttgaaattaaaacaaggtcaccgatagagattcacgcatcccaagtatatactagggctgttttccaattgttctctgaggagttaaccgatagtctatcttacatggaaacctggggaggacgaaagcaccgtgcaagttgtacggatgaactcgcaagaatcattccttaggaaggaatatcaggtgtcttgtgatttggaaagagaggaattttcatgcgtttgcaagatgtttgagcataagggattctgtgcagccacatcttaagggtatttgtttcttctactgtctaaaatttattttcattgggtcgtactatatgttcGgtagtgtttggctttttgaagtaatgcattggtttgtccctttaggtacttgttcagtatggtttgtcaagaattccagagaggtatatactgaaaagatggacgaaggatgctcgggatactataccacctcatctacatgggtacaaagatgatgtcgatgcttcacaatcgaggagttatagacatgtAaATGCTGAATAGGAAGACTGTGGAGGTGGCTAAGATTGCTAACAAAGATGTGCAGACATTTAAGATGGCAATGACAGTCATGAATAAGCTTTTGGAGGACATGAAAAATCAGTTATCTTTGGATGATGGTGACAATAGTAGAGAAGCTCCGAAGCGAGCAGCTAGGCATAAATCAAGGTCTACTGTATTGACTGAAGATGGAAACGAAGATGTTGGTGGAGGCGATGAGGACAGTGAGTATGACGTGCCAAGTGAGGACGAGGGTGGAAATTTGACTGCTGATATACTTCCACCGTTGAAAAAGAGAAGCAGAGGAAGACCTAAGGTGAATAGGTATAAATCGGGTGGTGAGGTTGCCAGCCTGAAAAGAAGAAAAGAAGTAGGGATTGAGAAGAAGAACACAACCAATGAGTGTGAGTCCGTTGAAGAAGAAaaaccaagtcattga
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| CDS seq | atggataaacaagtgaagaaccacagaccttctgatggtacggatggatcaagggaaattcttatggacgagcgcaaccctaccatggacatagtagatggtattagtcaatctgtccatgattcacaaccggatggtggtcagtcaagccgtgtagcaatggaggaggacgtgccgtcgcgggttggctcacatgattcagggcatggaattccagagactaagTGTCTCCAATACAGAAATTTGGTCCCTTCACTGGATTGGACAGAAGGAAACCCATATGAAAAAGAAGGAGCTGGGATACCGATGGAAAGAATGGTGGTAGATAATGTTGATAGCAGTGCTGTCATACCTCCTGAGTATGCTGATCCTCAAATTCTTACTCCGATGCTAGGACAAAGATTTAAGACTGAGAGGGATGCCTATAATTTTTATAATGTTTATGCTGTTAGTAAAGGATTTGGGATACGACTGGACAAAGGTCGCATGAATACTAAAAAGCAGAGAACAATGCGGCAAATATGTTGTTCTCACCAGgggaggaacccaaaaaccaagaagccttccgttcgaattgggtgcccagcaatgatgaagataaataggtctggagctggtagtggctggtcagtaacaaaggttgtttctgcgcacaaccatcctatgaaaaaaagtgtaggagttactaagaattatcagtcgcacaatcaaatagatgaggggactcgtggtattattgaagagatggacaaggttgaaattaaaacaaggtcaccgatagagattcacgcatcccaagtacttgttcagtatggtttgtcaagaattccagagagGAAGACTGTGGAGGTGGCTAAGATTGCTAACAAAGATGTGCAGACATTTAAGATGGCAATGACAGTCATGAATAAGCTTTTGGAGGACATGAAAAATCAGTTATCTTTGGATGATGGTGACAATAGTAGAGAAGCTCCGAAGCGAGCAGCTAGGCATAAATCAAGGTCTACTGTATTGACTGAAGATGGAAACGAAGATGTTGGTGGAGGCGATGAGGACAGTGAGTATGACGTGCCAAGTGAGGACGAGGGTGGAAATTTGACTGCTGATATACTTCCACCGTTGAAAAAGAGAAGCAGAGGAAGACCTAAGGTGAATAGGTATAAATCGGGTGGTGAGGTTGCCAGCCTGAAAAGAAGAAAAGAAGTAGGGATTGAGAAGAAGAACACAACCAATGAGTGTGAGTCCGTTGAAGAAGAAaaaccaagtcattga
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| Protein seq | MDKQVKNHRPSDGTDGSREILMDERNPTMDIVDGISQSVHDSQPDGGQSSRVAMEEDVPSRVGSHDSGHGIPETKCLQYRNLVPSLDWTEGNPYEKEGAGIPMERMVVDNVDSSAVIPPEYADPQILTPMLGQRFKTERDAYNFYNVYAVSKGFGIRLDKGRMNTKKQRTMRQICCSHQGRNPKTKKPSVRIGCPAMMKINRSGAGSGWSVTKVVSAHNHPMKKSVGVTKNYQSHNQIDEGTRGIIEEMDKVEIKTRSPIEIHASQVLVQYGLSRIPERKTVEVAKIANKDVQTFKMAMTVMNKLLEDMKNQLSLDDGDNSREAPKRAARHKSRSTVLTEDGNEDVGGGDEDSEYDVPSEDEGGNLTADILPPLKKRSRGRPKVNRYKSGGEVASLKRRKEVGIEKKNTTNECESVEEEKPSH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0004010 | OsNaBo_05g0004010.01 | Chr05 | 3117465 | 3121307 | + | NAM | ||
| CDS seq | atggataaacaagtgaagaaccacagaccttctgatggtacggatggatcaagggaaattcttatggacgagcgcaaccctaccatggacatagtagatggtattagtcaatctgtccatgattcacaaccggatggtggtcagtcaagccgtgtagcaatggaggaggacgtgccgtcgcgggttggctcacatgattcagggcatggaattccagagactaagTGTCTCCAATACAGAAATTTGGTCCCTTCACTGGATTGGACAGAAGGAAACCCATATGAAAAAGAAGGAGCTGGGATACCGATGGAAAGAATGGTGGTAGATAATGTTGATAGCAGTGCTGTCATACCTCCTGAGTATGCTGATCCTCAAATTCTTACTCCGATGCTAGGACAAAGATTTAAGACTGAGAGGGATGCCTATAATTTTTATAATGTTTATGCTGTTAGTAAAGGATTTGGGATACGACTGGACAAAGGTCGCATGAATACTAAAAAGCAGAGAACAATGCGGCAAATATGTTGTTCTCACCAGgggaggaacccaaaaaccaagaagccttccgttcgaattgggtgcccagcaatgatgaagataaataggtctggagctggtagtggctggtcagtaacaaaggttgtttctgcgcacaaccatcctatgaaaaaaagtgtaggagttactaagaattatcagtcgcacaatcaaatagatgaggggactcgtggtattattgaagagatggacaaggttgaaattaaaacaaggtcaccgatagagattcacgcatcccaagtacttgttcagtatggtttgtcaagaattccagagagGAAGACTGTGGAGGTGGCTAAGATTGCTAACAAAGATGTGCAGACATTTAAGATGGCAATGACAGTCATGAATAAGCTTTTGGAGGACATGAAAAATCAGTTATCTTTGGATGATGGTGACAATAGTAGAGAAGCTCCGAAGCGAGCAGCTAGGCATAAATCAAGGTCTACTGTATTGACTGAAGATGGAAACGAAGATGTTGGTGGAGGCGATGAGGACAGTGAGTATGACGTGCCAAGTGAGGACGAGGGTGGAAATTTGACTGCTGATATACTTCCACCGTTGAAAAAGAGAAGCAGAGGAAGACCTAAGGTGAATAGGTATAAATCGGGTGGTGAGGTTGCCAGCCTGAAAAGAAGAAAAGAAGTAGGGATTGAGAAGAAGAACACAACCAATGAGTGTGAGTCCGTTGAAGAAGAAaaaccaagtcattga
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| Protein seq | MDKQVKNHRPSDGTDGSREILMDERNPTMDIVDGISQSVHDSQPDGGQSSRVAMEEDVPSRVGSHDSGHGIPETKCLQYRNLVPSLDWTEGNPYEKEGAGIPMERMVVDNVDSSAVIPPEYADPQILTPMLGQRFKTERDAYNFYNVYAVSKGFGIRLDKGRMNTKKQRTMRQICCSHQGRNPKTKKPSVRIGCPAMMKINRSGAGSGWSVTKVVSAHNHPMKKSVGVTKNYQSHNQIDEGTRGIIEEMDKVEIKTRSPIEIHASQVLVQYGLSRIPERKTVEVAKIANKDVQTFKMAMTVMNKLLEDMKNQLSLDDGDNSREAPKRAARHKSRSTVLTEDGNEDVGGGDEDSEYDVPSEDEGGNLTADILPPLKKRSRGRPKVNRYKSGGEVASLKRRKEVGIEKKNTTNECESVEEEKPSH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0354200 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g03800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0354200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0019090 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0019030 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0018920 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0018920 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0014750 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0175800 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0032700 | SBH | 0.053046 | 0.000000 | 0.272941 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0320500 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0009490 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0013200 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0014750 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0009630 | SBH | 0.0 | 0.0 | 0.279352 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0011410 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G003830 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0011170 | RBH | 0.0 | 0.0 | 0.0 |
