Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_05g0002670 | OGI:05006160 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr05:2083689-2088111 | ||||||||
| Gene Symbol | RLCK178, OsPti1a, OsRLCK178 | ||||||||||
| DNA seq | ggagatagagaaagagagagtagaggagagaggaagctgccgcagcgacgaccagttggctggctctcttctgtagcagtagcaactagcaaagctgctgtatttaagttcaccgcgggtcaccacaccagctcacacacgctgtgctgctgctgctgccgctgctcctcctcctcCTcttacatcccatcctcgccgcgatttccttcgccgccgccgccggcttcgtcttcttCcccggcgccggggcacgcgaaaaggtgcgatcttgacgccggattcggcgccctctcgccctccctccccgaaagttcgctgctttttgctCcgatctgtgcccggaatctctcgtgggtggatggatggattggactcggtgtgatctcttcttctttcgctggtggTtgctccgccctcggggggcggttcagggttGgggatttgggtGggtttggtggctggttctttggtgggttgccggctctgaatctggagggagctTGggTtgggttCcctttcttggttggtcaactttgatagtagcgtttactgtgaggtgagggggaagaagaactagctcctctcgTttttagctgtgattgctgcgcctgattcgtttgattcggttgttcgtctgattttttttttctcgctgaattctgcggcttcttgagctttgccaaagaccacggtgtgttactctttccgttagttggaggagaacatgttagttgattaacagcttgTtgcgattagctaactgCgtgtattcgaggttgcggtagcatatcaattaggaataatgtccAattttgtagcgtcatgattgcaattgaagttttactgtgttcaatcaTtggcgtagtacttgtaggtataggcaagattgatgtttcagtgctgtaggagttgtgtggatttaggacagtgCTagggataaagatgcgattgatgaTtggtcgagcttctttggcatgcatcctgaattggagTggtgcgaggacatgaccgcgtgagctaCcggcatgagtgaagcagtgtgcccatgcaaataatttttgcatgctgttcttccatgctattctgtttagtctagtgcagactttgaagTggttatgaacttgtcacatttaaacagttgcctcacagtctGCCcttgtgttcataggatacatgtttgaTttaCaaatatggcatccaattaataatgcaatgttctaaccactggaagggtggctgaaTgaataatttaataaaaTttccatctgatgtgtattattggtgtctagggctaatgtggtatgTaaccctgtaggaaaTtggtaattatcaacgatgccaatgcagaatgagctgTCttctcatcagctctaataggaaaaggtggTtattagttctggccttaggcagatttCAatcctacctgggcatcctttgCttagtttgtttccagcatatcagtatatttggttccagtgaacttgccgtgctgatcaagaattgtagtggttAagtttgtctggtgaaagaagcagtgttacctgaaaaaatgtggccaattgTtttttgccgaattgagcaccccgaatctaaaacgtactcggattcagcaaccttgtcgtcttctgagtagtatcttgcatgccgtttctctttccgaaatcacacacatgagccaactcgcttgtccgtttccgataatactgggaagaagagacaaatgagagaactcatatgtggTtttagtagctcagcactaccattataccatgcaccatgcaTtgatacgtggtaccttcgagtagttcaTCgggcatttgtggacataattcatttgattgtcctggttgggttgagaaaatgcacaaaaagttacataaaaaGaataaggaaatgatgggaacaaaatggcttgtggagaaattactgatagaTCttttagcacctcctttatttattCcacatatgtcatgttctatgcaTtccactctctgcaaggtaagtgtgaaccctgagTtttcgaagttaatttaTttcattcactttCctattatctccacactttcatcaggttatttgtccatctacatagtaTtaactagttcaatcatgtGtctgTttgaatgtcttatggtggTgtatttgTgtttgcacttCtgcttgtgTttttcaatttgtgctcattcaatttctctctctttgaccgtctgtctgatgctacTtttttgtaaactaaatgcatgttgctggtttctaataaaaatttgcatgattctgttccagggtttgtttctagtagaatatgtcgtgctttgcatgctgtggtgatgaagatactcaaggagtaccagacaacaggaatccatacccagggaaCcatccagcaagtaatggcactgggccttTtgTtataatcatctgcattgtcccattacatactgtggtttacagatggtgctcaagttttactgaactgcaatttgtCtgcagggagcgatgcatatcgcacagctgatccaactccaagaggtcctcaaccTgtgaaagtgcaaccaattgcagtCcccatcattcctgttgatgaaattagggaagtgactaagaaTtttggtgatgaagctttgattggtgaaggttcctttggcagagtgtaTtttggtgttctaagaaatggtagaagtgcagcggtcaaaaagctagactctagtaagcagccaGaccAagaatttttggcacaggtctgtgTttatctctgttaggaattctgcaaCaagttttcTttttcttgcaactcatttcAaaatgcatccacaggtgtctatggtgtcgaggcttaagcatgaacatgttgttgagctgcTtggttaTTGtgttgatggaaatctccgtgtccttgcttatgagTttgcgactatgggTtctcTtcatgatatgcttcatggtatggtcTttgcaCatctgtgcttttgtttcctttattcatatcttgaactcttgatagaattatggtgttattttaaactttgaataccattAaatgtgtaaattgTatgtttacaggaaggaagggtgttaaaggagctcaacctggtccagtcttatcatgggcacaacgtgtgaagatagctgttggggcagcaaaaggcctggagtatcttcatgagaaagcacagcctcatatcatacacagggacatcaagtCcagcaatgttctccTtttcgatgatgatgttgctaaaatagctgactttgatttgtcAaaccaagctcctgacatggcagctcggcttcactctactagggttcttggaacctttggatatcatgcacctgagtatgttctggttttcttcaattctctataaaccttcagaattatatcaactactaatgttggtctaaattctgtggccaggtatgcaaTgaCtggacagCTtagctccaagagtgatgtgtacagttttggagttgttcttcttgagctattgaccggaaggaaacctgTtgaccatacattaccaaggggacagcagagtcttgtgacTtgggtaagtttcaatcgcATatgctattcgcggttattggaATattctggcttgcattctatttggtgggctgaattaatggtttaTtcaaCattggcaggccaccccaaggcttagcgaagacaaggTtaggcaatgtgttgactcaagacttggaggggactatcctcctaaagctgtcgcaaaggtatCcgatattcagagacaacctcttttctgttttatcaccataggttattGAaCtagtagtctccagaaactatcTtgacaatgtgcAaaaggaagctgatggctaaagattaattaaacagctaaccctaggattatatgtctgaaattcacatcgttcatgaagcatgtCtggattcaacattaaatttgtcgtagatctattgtttgcagcacttgtacttgagattatgtttccttgtaagCccagtttttaaacatttgttcttctgtaTgtttcaaacagTttgcagctgttgcggcgttatgcgttcagtatgaagcggactttcgaccAaacatgagcattgtcgtgaaagcgctgcaacccctgctgaatgctcgggcaactaaCcctggagaaaatGCCgggtcatAaaactttggtctaccttttgtatgatagatattaagTtaagaagtatgagacatcgatattgttcttgcggatgtgtggctggcTggaagtgtgtacaTttgtgattattcgtCccttgttgtaatcaccaaggttctagcaaccgaaaatatttgattCttcgcatcgggtgagacataacttgtctgagggtgacatgcatatctatctacctagaacaagttactcaagagggaaaacaaaattctgcatcttgaactgaaCtgaactg
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| CDS seq | atgtcgtgctttgcatgctgtggtgatgaagatactcaaggagtaccagacaacaggaatccatacccagggaaCcatccagcaaggagcgatgcatatcgcacagctgatccaactccaagaggtcctcaaccTgtgaaagtgcaaccaattgcagtCcccatcattcctgttgatgaaattagggaagtgactaagaaTtttggtgatgaagctttgattggtgaaggttcctttggcagagtgtaTtttggtgttctaagaaatggtagaagtgcagcggtcaaaaagctagactctagtaagcagccaGaccAagaatttttggcacaggtgtctatggtgtcgaggcttaagcatgaacatgttgttgagctgcTtggttaTTGtgttgatggaaatctccgtgtccttgcttatgagTttgcgactatgggTtctcTtcatgatatgcttcatggaaggaagggtgttaaaggagctcaacctggtccagtcttatcatgggcacaacgtgtgaagatagctgttggggcagcaaaaggcctggagtatcttcatgagaaagcacagcctcatatcatacacagggacatcaagtCcagcaatgttctccTtttcgatgatgatgttgctaaaatagctgactttgatttgtcAaaccaagctcctgacatggcagctcggcttcactctactagggttcttggaacctttggatatcatgcacctgagtatgcaaTgaCtggacagCTtagctccaagagtgatgtgtacagttttggagttgttcttcttgagctattgaccggaaggaaacctgTtgaccatacattaccaaggggacagcagagtcttgtgacTtgggccaccccaaggcttagcgaagacaaggTtaggcaatgtgttgactcaagacttggaggggactatcctcctaaagctgtcgcaaagTttgcagctgttgcggcgttatgcgttcagtatgaagcggactttcgaccAaacatgagcattgtcgtgaaagcgctgcaacccctgctgaatgctcgggcaactaaCcctggagaaaatGCCgggtcatAa
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| Protein seq | MSCFACCGDEDTQGVPDNRNPYPGNHPARSDAYRTADPTPRGPQPVKVQPIAVPIIPVDEIREVTKNFGDEALIGEGSFGRVYFGVLRNGRSAAVKKLDSSKQPDQEFLAQVSMVSRLKHEHVVELLGYCVDGNLRVLAYEFATMGSLHDMLHGRKGVKGAQPGPVLSWAQRVKIAVGAAKGLEYLHEKAQPHIIHRDIKSSNVLLFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLSSKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVRQCVDSRLGGDYPPKAVAKFAAVAALCVQYEADFRPNMSIVVKALQPLLNARATNPGENAGS |
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| Function | Pto-interacting protein 1 [UniProtKB/Swiss-Prot:Q41328] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0002670 | OsNaBo_05g0002670.01 | Chr05 | 2083689 | 2088111 | + | NAM | ||
| CDS seq | atgtcgtgctttgcatgctgtggtgatgaagatactcaaggagtaccagacaacaggaatccatacccagggaaCcatccagcaaggagcgatgcatatcgcacagctgatccaactccaagaggtcctcaaccTgtgaaagtgcaaccaattgcagtCcccatcattcctgttgatgaaattagggaagtgactaagaaTtttggtgatgaagctttgattggtgaaggttcctttggcagagtgtaTtttggtgttctaagaaatggtagaagtgcagcggtcaaaaagctagactctagtaagcagccaGaccAagaatttttggcacaggtgtctatggtgtcgaggcttaagcatgaacatgttgttgagctgcTtggttaTTGtgttgatggaaatctccgtgtccttgcttatgagTttgcgactatgggTtctcTtcatgatatgcttcatggaaggaagggtgttaaaggagctcaacctggtccagtcttatcatgggcacaacgtgtgaagatagctgttggggcagcaaaaggcctggagtatcttcatgagaaagcacagcctcatatcatacacagggacatcaagtCcagcaatgttctccTtttcgatgatgatgttgctaaaatagctgactttgatttgtcAaaccaagctcctgacatggcagctcggcttcactctactagggttcttggaacctttggatatcatgcacctgagtatgcaaTgaCtggacagCTtagctccaagagtgatgtgtacagttttggagttgttcttcttgagctattgaccggaaggaaacctgTtgaccatacattaccaaggggacagcagagtcttgtgacTtgggccaccccaaggcttagcgaagacaaggTtaggcaatgtgttgactcaagacttggaggggactatcctcctaaagctgtcgcaaagTttgcagctgttgcggcgttatgcgttcagtatgaagcggactttcgaccAaacatgagcattgtcgtgaaagcgctgcaacccctgctgaatgctcgggcaactaaCcctggagaaaatGCCgggtcatAa
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| Protein seq | MSCFACCGDEDTQGVPDNRNPYPGNHPARSDAYRTADPTPRGPQPVKVQPIAVPIIPVDEIREVTKNFGDEALIGEGSFGRVYFGVLRNGRSAAVKKLDSSKQPDQEFLAQVSMVSRLKHEHVVELLGYCVDGNLRVLAYEFATMGSLHDMLHGRKGVKGAQPGPVLSWAQRVKIAVGAAKGLEYLHEKAQPHIIHRDIKSSNVLLFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLSSKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVRQCVDSRLGGDYPPKAVAKFAAVAALCVQYEADFRPNMSIVVKALQPLLNARATNPGENAGS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0002670 | OsNaBo_05g0002670.02 | Chr05 | 2083704 | 2084704 | + | NAM | ||
| CDS seq | gagagtagaggagagaggaagctgccgcagcgacgaccagttggctggctctcttctgtagcagtagcaactagcaaagctgctgtatttaagttcaccgcgggtcaccacaccagctcacacacgctgtgctgctgctgctgccgctgctcctcctcctcCTcttacatcccatcctcgccgcgatttccttcgccgccgccgccggcttcgtcttcttCcccggcgccggggcacgcgaaaaggacagtgCTagggataaagatgcgattgatgaTtggtcgagcttctttggcatgcatcctgaattggagTggtgcgaggacatga
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| Protein seq | ESRGERKLPQRRPVGWLSSVAVATSKAAVFKFTAGHHTSSHTLCCCCCRCSSSSSYIPSSPRFPSPPPPASSSSPAPGHAKRTVLGIKMRLMIGRASLACILNWSGART |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.604845 | 75.848068 | 31.539545 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0135800 | RBH | 5.548540 | 6.965021 | 20.679474 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g04520 | RBH | 3.434280 | 4.291414 | 4.889650 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0135800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0002580 | RBH | 2.743691 | 87.031708 | 25.407738 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0002610 | RBH | 1.587210 | 18.532427 | 10.313588 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0002610 | RBH | 5.788790 | 56.732353 | 24.090366 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0002550 | RBH | 0.589717 | 2.308291 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0002650 | RBH | 21.356493 | 67.993324 | 49.481129 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0031700 | RBH | 23.2189285 | 126.177719 | 30.558799 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0002540 | RBH | 1.511770 | 7.890023 | 2.958576 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0031200 | RBH | 34.016988 | 110.65881 | 52.1003895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0002560 | RBH | 0.916482 | 1.369687 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0002480 | RBH | 2.009445 | 44.217896 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0002590 | RBH | 15.884679 | 77.049179 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0002620 | RBH | 4.122074 | 5.911207 | 5.258441 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0002650 | RBH | 1.797204 | 33.662605 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G002490 | RBH | 1.187932 | 18.074785 | 13.879812 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0012740 | SBH | 15.887058 | 39.756172 | 56.958439 |
