Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_05g0001600 | OGI:05003400 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr05:1133334-1134223 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ccactctcacatgcatcagtgcaattAaaacccacgatcaaccagtgccaaaacgatggtgagcgtgagattggagcaatggcgatgcggcatcactcgcgaattcgcaattgtttgcaaaacatcaacatgtaatattggaagatgatacatcatattcaagcaacgcaatgcgtttttatgggctaccaatgtttctgcaacacaaatttgcaggagaaaaaaaaaatgagaagagagatgcggtgatcacttgtccgccggtggcgttggagccggctcgtcggcgggcggcggctgcgccatggcctcctggcgagcgcggagcgcggcgaggacggagacggcgggcatctggaggcagccgaggaggtactggtaggactggaccctggtgggcatggactcgagctgcgcgaagtcgtcggggctgtagaggcggccctcgaagacggcgccggtgaagtcgttgagctgcagcttccactccttctggaagtcgcggtacggccgcagcgccggcgggatctcgtcggagcggacgaacagccacgcgttcatcccccgcgcgaacggccgcaccgcctcccaccgcgtcccggccaccgccgccgccacgtccgagttcttcgccacaaccagcctcgccgtcggcggcaggctggcgcggatgctccgcagctgcgacaccgtgaacccgtggcaccagatgcccgccaccagctggcactccaccagctcccgccgcagcagctcctgccgggccagctccgccgccgcgcggatcgacggcagcgtggaccccacggcgcgcacggacgtcatCcccgacggcggcggcggcgagggtttcccttgtgcggcaacgcggagacgaggagcttttcttt
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| CDS seq | atgacgtccgtgcgcgccgtggggtccacgctgccgtcgatccgcgcggcggcggagctggcccggcaggagctgctgcggcgggagctggtggagtgccagctggtggcgggcatctggtgccacgggttcacggtgtcgcagctgcggagcatccgcgccagcctgccgccgacggcgaggctggttgtggcgaagaactcggacgtggcggcggcggtggccgggacgcggtgggaggcggtgcggccgttcgcgcgggggatgaacgcgtggctgttcgtccgctccgacgagatcccgccggcgctgcggccgtaccgcgacttccagaaggagtggaagctgcagctcaacgacttcaccggcgccgtcttcgagggccgcctctacagccccgacgacttcgcgcagctcgagtccatgcccaccagggtccagtcctaccagtacctcctcggctgcctccagatgcccgccgtctccgtcctcgccgcgctccgcgctcgccaggaggccatggcgcagccgccgcccgccgacgagccggctccaacgccaccggcggacaagtga
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| Protein seq | MTSVRAVGSTLPSIRAAAELARQELLRRELVECQLVAGIWCHGFTVSQLRSIRASLPPTARLVVAKNSDVAAAVAGTRWEAVRPFARGMNAWLFVRSDEIPPALRPYRDFQKEWKLQLNDFTGAVFEGRLYSPDDFAQLESMPTRVQSYQYLLGCLQMPAVSVLAALRARQEAMAQPPPADEPAPTPPADK |
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| Function | 50S ribosomal protein L10, chloroplastic [UniProtKB/Swiss-Prot:Q9FY50] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0001600 | OsNaBo_05g0001600.01 | Chr05 | 1133334 | 1134223 | - | NAM | ||
| CDS seq | atgacgtccgtgcgcgccgtggggtccacgctgccgtcgatccgcgcggcggcggagctggcccggcaggagctgctgcggcgggagctggtggagtgccagctggtggcgggcatctggtgccacgggttcacggtgtcgcagctgcggagcatccgcgccagcctgccgccgacggcgaggctggttgtggcgaagaactcggacgtggcggcggcggtggccgggacgcggtgggaggcggtgcggccgttcgcgcgggggatgaacgcgtggctgttcgtccgctccgacgagatcccgccggcgctgcggccgtaccgcgacttccagaaggagtggaagctgcagctcaacgacttcaccggcgccgtcttcgagggccgcctctacagccccgacgacttcgcgcagctcgagtccatgcccaccagggtccagtcctaccagtacctcctcggctgcctccagatgcccgccgtctccgtcctcgccgcgctccgcgctcgccaggaggccatggcgcagccgccgcccgccgacgagccggctccaacgccaccggcggacaagtga
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| Protein seq | MTSVRAVGSTLPSIRAAAELARQELLRRELVECQLVAGIWCHGFTVSQLRSIRASLPPTARLVVAKNSDVAAAVAGTRWEAVRPFARGMNAWLFVRSDEIPPALRPYRDFQKEWKLQLNDFTGAVFEGRLYSPDDFAQLESMPTRVQSYQYLLGCLQMPAVSVLAALRARQEAMAQPPPADEPAPTPPADK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 8.853839 | 2.637019 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0121500 | RBH | 0.988305 | 0.905207 | 1.543898 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g03030 | RBH | 0.718806 | 0.731332 | 0.334655 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0121500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0001580 | RBH | 0.0 | 2.951786 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0001580 | RBH | 0.0 | 2.305265 | 0.341952 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0001650 | RBH | 1.904061 | 2.522016 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0001500 | RBH | 0.078974 | 0.653012 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0001540 | RBH | 2.368407 | 11.705722 | 1.279137 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0018600 | RBH | 8.524739 | 13.976349 | 7.5895875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0001520 | RBH | 0.305574 | 1.081995 | 0.306877 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0019600 | RBH | 5.7584075 | 6.6276095 | 11.20946 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0001560 | RBH | 0.093821 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0001480 | RBH | 0.621862 | 19.927118 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0001530 | RBH | 0.0 | 14.214666 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0001540 | RBH | 0.417026 | 0.359475 | 0.260418 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0001570 | RBH | 0.132808 | 7.272212 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G001480 | RBH | 0.0 | 11.853795 | 0.200703 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0012890 | RBH | 9.952316 | 5.962366 | 6.346714 |
