Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_05g0001000 | OGI:05001890 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr05:658805-661327 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggggaggctttcctgtatcaaacgccttcctcgattcgctcTccggcgcggcgtctccgatgctttcctccgtccccttctccgcaccgcaTtcctcctccgccgccgccgccgtctcagcaccgcggagagcactcatcctccgcggcggggacgcttccgtcgggaccccgattctgatgagagcaaactcgtctccctcgcgcggcagcgtggggcggccgccgctcgcgccatgttcgacggaatgccgcgccgggacgatgccgtcgcgtacgccgcgatggtcggaatccacctctgggaccgggaccttccccacgCggaggcgctctaccgtgcggcgccaccggattgccgggggatccatcttgacactgtcatgctcgatgggtacgtcaaggcaggccaggtcgaccgtgcccgcaggctgttcgacggaatggcggtgaagaacgtggtcgCctggacatgcatggtctctggatattgccgtgcgggccttgtggacgaagcgcgccgcctgtttgatttgatgccatacaggaatgTtttttcgtggacgacaatggtgcagggttatgcacacaatGggatgctacgggaagcgagggAgatgtttgataagatgccagagaggaacgtggttgcttggacagtgatggttaaagcctatgttgataatggttgtattcaggaggctttggagttgttcaacaggatgcctcagatgaattcatattcttggaatgccatggcaaCcggtcttatgagtgctgggaaagtggatgacgcggttcagttgtttgataagatgccacataagaatgtagtctcttggactataatggtcactggcttggcacagaatggttttgtttctagggcaagagagttctttgacagaatgccaaagaaggatattccggcatggaattcaatgatcactgcttataccaatgatggccaagtgaatgatgcacaaaggttgtttgatattatgccttcaaagaacctggtgacttggaatatcatcattgatgggtattccatgaataatctgaaggacgaagctttgaggttgtttcttcttatgctccgctcagcagtatctcctgacagcactacattaattagtgtcttagtagtatctgagagcacaatggaggttagacaaattcatgggttgtccacaaaactggggtaccagcccgaaactaacttaggaaatactctggtttcaatgtattctagaagtggcgatctgtcatctgcatggcttgctttcaggagattgaacgagaaggatgccataacatggacatcgatgatacaagctttagcAaaccatgggtgtgcaccttgcgccttgcagggctttgcccaaatgttaaggtgtggatataagCccagctcaactacctttactgctgtgttgtcagcttgtaaccatgtTggaTtagtggagaaaggccgaaaaatattcaaatcaattagccatgtttatggactagagccaaccattgagcactactcttgccttgtggatctcctaggtcgagcagggtacgtgagggaagccaaggaagtggttgacggtatgcagcgggatatgtgtgatgaggccattctagggacgcttctgggatcttgcatgacacataatgaggtggaggtaggaagagctgTgggtgaggatcttgtcaaaattgacccctctggttcaggaggctatacgcttttggccaatgtttttgcatctggtGggatgtggaatgaggtggcaagtgtgtggaagattatgaagggaagcaaagtcaagaagactcctggttttagccagaTtgaagtaaatgcaaggaaCcatgttttctactcaagggaccagatgcattcacAacgtacagaaatttatgagatgctaaatagtaggcttgtccctcagatgaagggttcatcaagtctaggaactgaTttctactgatcaaaatgaTttactatatgctttagagtcaagcccaaaaggctatcagtacaatcctgatattCatcctctggctagtatggaaagaagcaatgcaaaggtgttcgaaaacaggtcgtcttccatgctcacttcTgggctacagaagctgcaagcgtggcgagacaaagtggcatggaagttcaaaaCttctttgtgaaaTattagccTttgaTTttttttttttcctcagagcctgtgtgctgctgTttcaccgcttgggttgggtagctatgtaaccagactttgtttggggacagctctctttctaatgacatgatatgcaagtttttgcatgttatCcccgccctcccaaCacacacacaccctcccacCAaccaaaaaaggttaagtaggttatcgagagttgatctgatcatgtaagaatgatatagactagcccggctgacagatatccaaaggtttatgttaccttgatggggctgttaattattttaggcaggacagaaaaggttaataccatcataTtcaggagTC
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| CDS seq | atggggaggctttcctgtatcaaacgccttcctcgattcgctcTccggcgcggcgtctccgatgctttcctccgtccccttctccgcaccgcaTtcctcctccgccgccgccgccgtctcagcaccgcggagagcactcatcctccgcggcggggacgcttccgtcgggaccccgattctgatgagagcaaactcgtctccctcgcgcggcagcgtggggcggccgccgctcgcgccatgttcgacggaatgccgcgccgggacgatgccgtcgcgtacgccgcgatggtcggaatccacctctgggaccgggaccttccccacgCggaggcgctctaccgtgcggcgccaccggattgccgggggatccatcttgacactgtcatgctcgatgggtacgtcaaggcaggccaggtcgaccgtgcccgcaggctgttcgacggaatggcggtgaagaacgtggtcgCctggacatgcatggtctctggatattgccgtgcgggccttgtggacgaagcgcgccgcctgtttgatttgatgccatacaggaatgTtttttcgtggacgacaatggtgcagggttatgcacacaatGggatgctacgggaagcgagggAgatgtttgataagatgccagagaggaacgtggttgcttggacagtgatggttaaagcctatgttgataatggttgtattcaggaggctttggagttgttcaacaggatgcctcagatgaattcatattcttggaatgccatggcaaCcggtcttatgagtgctgggaaagtggatgacgcggttcagttgtttgataagatgccacataagaatgtagtctcttggactataatggtcactggcttggcacagaatggttttgtttctagggcaagagagttctttgacagaatgccaaagaaggatattccggcatggaattcaatgatcactgcttataccaatgatggccaagtgaatgatgcacaaaggttgtttgatattatgccttcaaagaacctggtgacttggaatatcatcattgatgggtattccatgaataatctgaaggacgaagctttgaggttgtttcttcttatgctccgctcagcagtatctcctgacagcactacattaattagtgtcttagtagtatctgagagcacaatggaggttagacaaattcatgggttgtccacaaaactggggtaccagcccgaaactaacttaggaaatactctggtttcaatgtattctagaagtggcgatctgtcatctgcatggcttgctttcaggagattgaacgagaaggatgccataacatggacatcgatgatacaagctttagcAaaccatgggtgtgcaccttgcgccttgcagggctttgcccaaatgttaaggtgtggatataagCccagctcaactacctttactgctgtgttgtcagcttgtaaccatgtTggaTtagtggagaaaggccgaaaaatattcaaatcaattagccatgtttatggactagagccaaccattgagcactactcttgccttgtggatctcctaggtcgagcagggtacgtgagggaagccaaggaagtggttgacggtatgcagcgggatatgtgtgatgaggccattctagggacgcttctgggatcttgcatgacacataatgaggtggaggtaggaagagctgTgggtgaggatcttgtcaaaattgacccctctggttcaggaggctatacgcttttggccaatgtttttgcatctggtGggatgtggaatgaggtggcaagtgtgtggaagattatgaagggaagcaaagtcaagaagactcctggttttagccagaTtgaagtaaatgcaaggaaCcatgttttctactcaagggaccagatgcattcacAacgtacagaaatttatgagatgctaaatagtaggcttgtccctcagatgaagggttcatcaagtctaggaactgaTttctactga
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| Protein seq | MGRLSCIKRLPRFALRRGVSDAFLRPLLRTAFLLRRRRRLSTAESTHPPRRGRFRRDPDSDESKLVSLARQRGAAAARAMFDGMPRRDDAVAYAAMVGIHLWDRDLPHAEALYRAAPPDCRGIHLDTVMLDGYVKAGQVDRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGYAHNGMLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGLMSAGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVSRAREFFDRMPKKDIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALRLFLLMLRSAVSPDSTTLISVLVVSESTMEVRQIHGLSTKLGYQPETNLGNTLVSMYSRSGDLSSAWLAFRRLNEKDAITWTSMIQALANHGCAPCALQGFAQMLRCGYKPSSTTFTAVLSACNHVGLVEKGRKIFKSISHVYGLEPTIEHYSCLVDLLGRAGYVREAKEVVDGMQRDMCDEAILGTLLGSCMTHNEVEVGRAVGEDLVKIDPSGSGGYTLLANVFASGGMWNEVASVWKIMKGSKVKKTPGFSQIEVNARNHVFYSRDQMHSQRTEIYEMLNSRLVPQMKGSSSLGTDFY |
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| Function | Pentatricopeptide repeat-containing protein At2g35030, mitochondrial [UniProtKB/Swiss-Prot:O64766] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0001000 | OsNaBo_05g0001000.01 | Chr05 | 658805 | 661327 | + | NAM | ||
| CDS seq | atggggaggctttcctgtatcaaacgccttcctcgattcgctcTccggcgcggcgtctccgatgctttcctccgtccccttctccgcaccgcaTtcctcctccgccgccgccgccgtctcagcaccgcggagagcactcatcctccgcggcggggacgcttccgtcgggaccccgattctgatgagagcaaactcgtctccctcgcgcggcagcgtggggcggccgccgctcgcgccatgttcgacggaatgccgcgccgggacgatgccgtcgcgtacgccgcgatggtcggaatccacctctgggaccgggaccttccccacgCggaggcgctctaccgtgcggcgccaccggattgccgggggatccatcttgacactgtcatgctcgatgggtacgtcaaggcaggccaggtcgaccgtgcccgcaggctgttcgacggaatggcggtgaagaacgtggtcgCctggacatgcatggtctctggatattgccgtgcgggccttgtggacgaagcgcgccgcctgtttgatttgatgccatacaggaatgTtttttcgtggacgacaatggtgcagggttatgcacacaatGggatgctacgggaagcgagggAgatgtttgataagatgccagagaggaacgtggttgcttggacagtgatggttaaagcctatgttgataatggttgtattcaggaggctttggagttgttcaacaggatgcctcagatgaattcatattcttggaatgccatggcaaCcggtcttatgagtgctgggaaagtggatgacgcggttcagttgtttgataagatgccacataagaatgtagtctcttggactataatggtcactggcttggcacagaatggttttgtttctagggcaagagagttctttgacagaatgccaaagaaggatattccggcatggaattcaatgatcactgcttataccaatgatggccaagtgaatgatgcacaaaggttgtttgatattatgccttcaaagaacctggtgacttggaatatcatcattgatgggtattccatgaataatctgaaggacgaagctttgaggttgtttcttcttatgctccgctcagcagtatctcctgacagcactacattaattagtgtcttagtagtatctgagagcacaatggaggttagacaaattcatgggttgtccacaaaactggggtaccagcccgaaactaacttaggaaatactctggtttcaatgtattctagaagtggcgatctgtcatctgcatggcttgctttcaggagattgaacgagaaggatgccataacatggacatcgatgatacaagctttagcAaaccatgggtgtgcaccttgcgccttgcagggctttgcccaaatgttaaggtgtggatataagCccagctcaactacctttactgctgtgttgtcagcttgtaaccatgtTggaTtagtggagaaaggccgaaaaatattcaaatcaattagccatgtttatggactagagccaaccattgagcactactcttgccttgtggatctcctaggtcgagcagggtacgtgagggaagccaaggaagtggttgacggtatgcagcgggatatgtgtgatgaggccattctagggacgcttctgggatcttgcatgacacataatgaggtggaggtaggaagagctgTgggtgaggatcttgtcaaaattgacccctctggttcaggaggctatacgcttttggccaatgtttttgcatctggtGggatgtggaatgaggtggcaagtgtgtggaagattatgaagggaagcaaagtcaagaagactcctggttttagccagaTtgaagtaaatgcaaggaaCcatgttttctactcaagggaccagatgcattcacAacgtacagaaatttatgagatgctaaatagtaggcttgtccctcagatgaagggttcatcaagtctaggaactgaTttctactga
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| Protein seq | MGRLSCIKRLPRFALRRGVSDAFLRPLLRTAFLLRRRRRLSTAESTHPPRRGRFRRDPDSDESKLVSLARQRGAAAARAMFDGMPRRDDAVAYAAMVGIHLWDRDLPHAEALYRAAPPDCRGIHLDTVMLDGYVKAGQVDRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGYAHNGMLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGLMSAGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVSRAREFFDRMPKKDIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALRLFLLMLRSAVSPDSTTLISVLVVSESTMEVRQIHGLSTKLGYQPETNLGNTLVSMYSRSGDLSSAWLAFRRLNEKDAITWTSMIQALANHGCAPCALQGFAQMLRCGYKPSSTTFTAVLSACNHVGLVEKGRKIFKSISHVYGLEPTIEHYSCLVDLLGRAGYVREAKEVVDGMQRDMCDEAILGTLLGSCMTHNEVEVGRAVGEDLVKIDPSGSGGYTLLANVFASGGMWNEVASVWKIMKGSKVKKTPGFSQIEVNARNHVFYSRDQMHSQRTEIYEMLNSRLVPQMKGSSSLGTDFY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.289742 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0112900 | RBH | 0.0 | 0.452548 | 0.242601 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g02210 | RBH | 0.0 | 0.153020 | 0.006659 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0112900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0000980 | RBH | 0.075387 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0000980 | RBH | 0.0 | 0.425736 | 0.358416 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0001030 | RBH | 0.0 | 0.0 | 1.050949 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0000930 | RBH | 0.028254 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0000940 | RBH | 0.0 | 1.361743 | 1.334784 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0011400 | RBH | 0.3472005 | 0.6751565 | 0.2465345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0000950 | RBH | 0.0 | 0.0 | 0.146662 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0011700 | RBH | 0.411662 | 0.5678655 | 3.62273 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0000980 | RBH | 0.0 | 0.048199 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0000900 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0000960 | RBH | 0.800441 | 2.501675 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0000960 | RBH | 0.0 | 0.0 | 0.182706 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0000960 | RBH | 0.0 | 1.396444 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G000900 | RBH | 0.0 | 0.351919 | 0.140867 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0047640 | SBH | 0.112868 | 0.0 | 1.384330 |
