Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0031090 | OGI:04046690 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:34913375-34913839 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctatatttttccttttcctagttcttcttccaagcgcaggataaccccaaggggttgtgggtttttttctaccaatggggctttcccttcaccgcccccatgggggtgtccacagggttcataactaccccttactacggggcgtttacctagccaacacttagacggctctacccaaactttttggttcaccccaacattaccacttgtccgactgttgctaagcagttttgggataccaaacggacctccccagatggtaacttaaagtggccgatttaccttcttttgcaatcagtttcgctacagcacctgctgctctagctaattgcccaccccttccacgtgtgatttctatgttatgtatggccgtgcctAagggcatatcggttgaagtagattcttcttttctctcaaaaaaccccttcccaaactgtacaagcttCttccaaagcatacggcttt
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| CDS seq | atgctttggaaGaagcttgtacagtttgggaaggggttttttgagagaaaagaagaatctacttcaaccgatatgccctTaggcacggccatacataacatagaaatcacacgtggaaggggtgggcaattagctagagcagcaggtgctgtagcgaaactgattgcaaaagaagttaccatctggggaggtccgtttggtatcccaaaactgcttagcaacagtcggacaagtggtaatgttggggtgaaccaaaaagtttgggtagagccgtctaagtgttggctaggtaaacgccccgtagtaaggggtagttatgaaccctgtggacacccccatgggggcggtgaagggaaagccccattggtagaaaaaaacccacaaccccttggggttatcctgcgcttggaagaagaactaggaaaaggaaaaatatag
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| Protein seq | MLWKKLVQFGKGFFERKEESTSTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEVTIWGGPFGIPKLLSNSRTSGNVGVNQKVWVEPSKCWLGKRPVVRGSYEPCGHPHGGGEGKAPLVEKNPQPLGVILRLEEELGKGKI |
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| Function | 50S ribosomal protein L2, chloroplastic [UniProtKB/Swiss-Prot:P21434] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0031090 | OsNaBo_04g0031090.01 | Chr04 | 34913375 | 34913839 | - | NAM | ||
| CDS seq | atgctttggaaGaagcttgtacagtttgggaaggggttttttgagagaaaagaagaatctacttcaaccgatatgccctTaggcacggccatacataacatagaaatcacacgtggaaggggtgggcaattagctagagcagcaggtgctgtagcgaaactgattgcaaaagaagttaccatctggggaggtccgtttggtatcccaaaactgcttagcaacagtcggacaagtggtaatgttggggtgaaccaaaaagtttgggtagagccgtctaagtgttggctaggtaaacgccccgtagtaaggggtagttatgaaccctgtggacacccccatgggggcggtgaagggaaagccccattggtagaaaaaaacccacaaccccttggggttatcctgcgcttggaagaagaactaggaaaaggaaaaatatag
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| Protein seq | MLWKKLVQFGKGFFERKEESTSTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEVTIWGGPFGIPKLLSNSRTSGNVGVNQKVWVEPSKCWLGKRPVVRGSYEPCGHPHGGGEGKAPLVEKNPQPLGVILRLEEELGKGKI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 10.547640 | 0.000000 | 29.050081 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0016790 | RBH | 9.271492 | 0.000000 | 1.855370 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0017540 | RBH | 8.719533 | 6.461831 | 22.215942 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0017270 | RBH | 3.018337 | 0.000000 | 2.556259 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0017250 | RBH | 219.622284 | 28.802002 | 236.147369 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0368300 | RBH | 1.5872025 | 1.14623 | 0.776955 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0016030 | RBH | 19.023918 | 2.716201 | 13.963650 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0367000 | RBH | 115.4085655 | 16.793203 | 12.3001365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0016600 | RBH | 36.707943 | 3.504138 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0016460 | RBH | 47.327312 | 149.170212 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0016460 | RBH | 225.833755 | 174.531265 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0016970 | RBH | 17.958435 | 0.274696 | 6.926288 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0017050 | RBH | 0.743740 | 2.656448 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G016260 | RBH | 2.283695 | 3.454943 | 0.972557 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
