Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0031020 | OGI:04102800 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:34853984-34855549 | ||||||||
| Gene Symbol | OsPUB32 | ||||||||||
| DNA seq | cgaatgatttagttcatctattgcgtcgatctgtacactttgattcataGgactacatcgaacgatctcaactcaataaaattaatcgagcgaaaggaagaatcgaacaagtgTtcaattctctctgtgctgtatgttggtagctagctagcgatgaggccggtgatcatgAatcagaattcgatcagcaagaagggtaGagggccTggaggtGAggctgcaagcagggcgagttcctccacgctctggcgtgcagccgcagcgtctcccgcgcccgctcccgcgtcctctccccgcactgctccgactgcgccaccacgcacagcttctccaccgcccccgtctgcgccatctcctgcaccaccgccgccgtcgccgcgtgcctcgccaccgaccgcaGCccccgcaccgccttctcgctcgccaCctccgacaccctcagcaccttcctccccaccaccgccacgcccgcgccgtgcgacaccagcgccgcccgcccctccgcgcacccgcacatccggtccagcgccgccagggccagctcgcacccgcgccgctcgactggcccgtccaggagcatgtcgatcagcaccgccaccgcgccggcgtccaccgccttcacgcggttgcggccccacgacgtcgtgccgaccagcacgtgcagcgccgccctcgtcgccgggctcgataccctgtcgcggagcagctgcaccgcctcaccgaacacctcctccgggagggacaccagcctgttcgacggcatgaccgccgtcacggcctccaggagcagcgccgcgtgcgcccgggacgtggtgttcgtccgctgcagcgtggcgacgagcgcgtcgacgagctcctcgttcctctcgacgagccgcgccaggcaccgctccgagagctccaGcgagcagacgatctcgagggcctcgtcgcacgcggccttggcgtctcgacacgacgcgacgacgacggcggccagaaCatccaccgcgccggggacggcggcgaggagcttcctgttacgctcgctctcggcggcaacgtccctgagctcgcgcagcgcgtcgaggaGggcagcggagctcgtggcggcgcggaggcgggagacgaggtcggcgacgcgggcgcggtcggcggggggcttGggggtggggacgaggtcgacgccatggtcggcgtggagggcgcaccacgactggatgaggcggcgcagggtgtggTtgggcgtggggtcgcagtcgggcggcacgggctgcttggtgagcgggcaggtgccggcggtgaggagccatcgctcgatgccgtcgcggtcgtaggtgatgccggtggggagcgtcaccgggtcgcgcatgatctgcagcgagatGgggcacacgaagtaggacggcacctccacctccacctccacctgctgctgctcctccattgccgtcggttgcaatgctgctgctagctcgtcgtcgtcgtcgtcttcttggctcttgctccggtgatggtgagctgagtagtAGttgttgtattgtatgtggtggagatggcagcaatggtggatgggagatggggagt
More
|
||||||||||
| CDS seq | atggaggagcagcagcaggtggaggtggaggtggaggtgccgtcctacttcgtgtgcccCatctcgctgcagatcatgcgcgacccggtgacgctccccaccggcatcacctacgaccgcgacggcatcgagcgatggctcctcaccgccggcacctgcccgctcaccaagcagcccgtgccgcccgactgcgaccccacgcccaAccacaccctgcgccgcctcatccagtcgtggtgcgccctccacgccgaccatggcgtcgacctcgtccccaccccCaagccccccgccgaccgcgcccgcgtcgccgacctcgtctcccgcctccgcgccgccacgagctccgctgccCtcctcgacgcgctgcgcgagctcagggacgttgccgccgagagcgagcgtaacaggaagctcctcgccgccgtccccggcgcggtggatGttctggccgccgtcgtcgtcgcgtcgtgtcgagacgccaaggccgcgtgcgacgaggccctcgagatcgtctgctcgCtggagctctcggagcggtgcctggcgcggctcgtcgagaggaacgaggagctcgtcgacgcgctcgtcgccacgctgcagcggacgaacaccacgtcccgggcgcacgcggcgctgctcctggaggccgtgacggcggtcatgccgtcgaacaggctggtgtccctcccggaggaggtgttcggtgaggcggtgcagctgctccgcgacagggtatcgagcccggcgacgagggcggcgctgcacgtgctggtcggcacgacgtcgtggggccgcaaccgcgtgaaggcggtggacgccggcgcggtggcggtgctgatcgacatgctcctggacgggccagtcgagcggcgcgggtgcgagctggccctggcggcgctggaccggatgtgcgggtgcgcggaggggcgggcggcgctggtgtcgcacggcgcgggcgtggcggtggtggggaggaaggtgctgagggtgtcggagGtggcgagcgagaaggcggtgcggggGCtgcggtcggtggcgaggcacgcggcgacggcggcggtggtgcaggagatggcgcagacgggggcggtggagaagctgtgcgtggtggcgcagtcggagcagtgcggggagaggacgcgggagcgggcgcgggagacgctgcggctgcacgccagagcgtggaggaactcgccctgcttgcagccTCacctccAggccctCtacccttcttgctga
More
|
||||||||||
| Protein seq | MEEQQQVEVEVEVPSYFVCPISLQIMRDPVTLPTGITYDRDGIERWLLTAGTCPLTKQPVPPDCDPTPNHTLRRLIQSWCALHADHGVDLVPTPKPPADRARVADLVSRLRAATSSAALLDALRELRDVAAESERNRKLLAAVPGAVDVLAAVVVASCRDAKAACDEALEIVCSLELSERCLARLVERNEELVDALVATLQRTNTTSRAHAALLLEAVTAVMPSNRLVSLPEEVFGEAVQLLRDRVSSPATRAALHVLVGTTSWGRNRVKAVDAGAVAVLIDMLLDGPVERRGCELALAALDRMCGCAEGRAALVSHGAGVAVVGRKVLRVSEVASEKAVRGLRSVARHAATAAVVQEMAQTGAVEKLCVVAQSEQCGERTRERARETLRLHARAWRNSPCLQPHLQALYPSC |
||||||||||
| Function | E3 ubiquitin-protein ligase PUB23 [UniProtKB/Swiss-Prot:Q84TG3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0031020 | OsNaBo_04g0031020.01 | Chr04 | 34853984 | 34855549 | - | NAM | ||
| CDS seq | atggaggagcagcagcaggtggaggtggaggtggaggtgccgtcctacttcgtgtgcccCatctcgctgcagatcatgcgcgacccggtgacgctccccaccggcatcacctacgaccgcgacggcatcgagcgatggctcctcaccgccggcacctgcccgctcaccaagcagcccgtgccgcccgactgcgaccccacgcccaAccacaccctgcgccgcctcatccagtcgtggtgcgccctccacgccgaccatggcgtcgacctcgtccccaccccCaagccccccgccgaccgcgcccgcgtcgccgacctcgtctcccgcctccgcgccgccacgagctccgctgccCtcctcgacgcgctgcgcgagctcagggacgttgccgccgagagcgagcgtaacaggaagctcctcgccgccgtccccggcgcggtggatGttctggccgccgtcgtcgtcgcgtcgtgtcgagacgccaaggccgcgtgcgacgaggccctcgagatcgtctgctcgCtggagctctcggagcggtgcctggcgcggctcgtcgagaggaacgaggagctcgtcgacgcgctcgtcgccacgctgcagcggacgaacaccacgtcccgggcgcacgcggcgctgctcctggaggccgtgacggcggtcatgccgtcgaacaggctggtgtccctcccggaggaggtgttcggtgaggcggtgcagctgctccgcgacagggtatcgagcccggcgacgagggcggcgctgcacgtgctggtcggcacgacgtcgtggggccgcaaccgcgtgaaggcggtggacgccggcgcggtggcggtgctgatcgacatgctcctggacgggccagtcgagcggcgcgggtgcgagctggccctggcggcgctggaccggatgtgcgggtgcgcggaggggcgggcggcgctggtgtcgcacggcgcgggcgtggcggtggtggggaggaaggtgctgagggtgtcggagGtggcgagcgagaaggcggtgcggggGCtgcggtcggtggcgaggcacgcggcgacggcggcggtggtgcaggagatggcgcagacgggggcggtggagaagctgtgcgtggtggcgcagtcggagcagtgcggggagaggacgcgggagcgggcgcgggagacgctgcggctgcacgccagagcgtggaggaactcgccctgcttgcagccTCacctccAggccctCtacccttcttgctga
More
|
|||||||
| Protein seq | MEEQQQVEVEVEVPSYFVCPISLQIMRDPVTLPTGITYDRDGIERWLLTAGTCPLTKQPVPPDCDPTPNHTLRRLIQSWCALHADHGVDLVPTPKPPADRARVADLVSRLRAATSSAALLDALRELRDVAAESERNRKLLAAVPGAVDVLAAVVVASCRDAKAACDEALEIVCSLELSERCLARLVERNEELVDALVATLQRTNTTSRAHAALLLEAVTAVMPSNRLVSLPEEVFGEAVQLLRDRVSSPATRAALHVLVGTTSWGRNRVKAVDAGAVAVLIDMLLDGPVERRGCELALAALDRMCGCAEGRAALVSHGAGVAVVGRKVLRVSEVASEKAVRGLRSVARHAATAAVVQEMAQTGAVEKLCVVAQSEQCGERTRERARETLRLHARAWRNSPCLQPHLQALYPSC
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 13.825127 | 0.501223 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0686000 | RBH | 0.153453 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g58920 | RBH | 0.097177 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0686000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0031740 | RBH | 0.0 | 4.841318 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0032520 | RBH | 0.0 | 3.578150 | 0.256877 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0032090 | RBH | 0.0 | 9.902900 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0031930 | RBH | 0.0 | 0.177234 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0032200 | RBH | 0.0 | 6.090553 | 0.665544 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0554400 | RBH | 0.4518975 | 46.8684715 | 0.048738 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0030820 | RBH | 0.0 | 1.077630 | 0.196819 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0560400 | RBH | 0.3606475 | 29.4887055 | 0.0548755 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0031300 | RBH | 0.0 | 0.083255 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0031090 | RBH | 0.0 | 13.426515 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0031230 | RBH | 0.0 | 21.227955 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0031800 | RBH | 0.0 | 0.630736 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0031800 | RBH | 0.0 | 5.733974 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G031280 | RBH | 0.0 | 1.556634 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0040540 | SBH | 0.0 | 0.534709 | 0.0 |
