Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0030400 | OGI:04101560 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:34444987-34448820 | ||||||||
| Gene Symbol | RLCK172, OsRLCK172 | ||||||||||
| DNA seq | atgtccaacaagcagcgatcttgaattgctctgacgtaaacaagtcaggatcaacctactactatttacaagatctagatgccgcaatttgcacaaggaatggaaagaaacaacacgattcacaattggcacacatctaaacgtgtgccctctatgcactgtcactcaactcaacatgcaaaggtaagacaagaaacatagacccagcatcagcatcaatcagcctggtgatgttttccttccattttcaccttgggctgatctcggacaccgtgggtggcaccaccgtgctgaacatgtcggaggtgtcggacgccgagtgcttgaacctcgagttgctggagttggtggccttggagaccgtgccattgtagtcgtggatgtagcccggcgccgtgagctcgcgctcgttgatgcggatgggcttggacagcatcgtcaccacctgcggcatcgacggccgccgcgccgccgccgcctgcgtgcagaagagggccgtcttgatgtaccggaggacctcctcttcagggtaatctcccatttctgaatccaccagctccttgagcttccctacctcatgtagctcccatgcctgttaattgtgaaagctaggctgagtttggcagcaagagttggtaactcatcccccacacgcacgtaaaacggagcgactcattagtacataattaactaactttttttttttcaaaatatggattaatatgttctttttaaaaacaacttctcttttgcaaaaaaaaaatagcgtttaacagtttaaaagacatgcgcgtggaaaacgatagagatgagttgggaaatatagctgcgtaattaacacggccttaattgatgcagaggctggaattatacttccattctctaataaaagatttagatggagagtccagcgattacggcttaattggaatgtctctagagcaaatgtctgaaggtgaaagcaaatctctgaattttggatagtaaagatgatagtaagactgaccttctctaggagaatcttatcgtcagccaggagactccttgaactactcttgccacttacgatctcaagtacaaggacgccaaaactgtatatatcggctctcttcgtcaattggccatgccatgcatattccggtgcaaggtagcctctgcattgaacaaatagatcagttcagttactgcaactgcaaggttactttctactcaaacaaactgctaaatgctgaaatactcacgtcgttccagcaacacgggtactgatgtgggtgatattatcagggaataacttggctaaaccgaagtccccgatcttggggttgtaaagcttgtcaagaagtatattgctagccttgatatctctgtgcacaatcggtgacgcaatctcttcatgcaggtatgcaagtcctttggcgattcctatgcatatagcagatcttatgctccaagtaaaatttgcaggttcgctattagaacctacagaacacaagataaaaggttaagcaacaaacgaaatcaatgcacttatatagaaaaatagtcattgtaacatatcaatattcatacccaacaatgcacggtcaaggctgctgttttctaaatactcgtataccaaaattcgattgtttccttcaacacaacagccaattaattcaacaaggttgggatgcttcacattggtaataacatcaatttctgtcaaaaattctcgaacgccctgcctggattcagcagaaagaactttcaccgcaacatctcgcccatttctaatagttccctgaaacatcaaagcattggtaagaatgcaaggactgatggcttcagatttgaaagggatataaccctcaatggactcctcccttccacatataaagaaaaacaaacattaccttgtatactgtcccaaagccacctcggccaattttattactgcggttgaagttttctgttgctgatctcaactcagaataagagaaaagccttatgtttttctcaggcggaatacctgaaagttagttacatttagttaagtaaagcatggaatcttaaaatggagcttcagtactggcattctctagcctaatatgatcgaatctgtgatagggacaatatacatgtttctatttcataaactctgttggctgctatgcaaattcagcataaattttgcaagcaaatacagttcgtaccgctaacgccatgagagtaaggattctctcctttcttggattttggaatgcaacaccaccagctcatatcctcagttgttgtggctgtcttgtacacttcaacatgcagaagaggaatcttcaggaataattattctgcaggaattcattgcgaaacaaccacttagagagttgcaaattgagttcatttgtacattttatatattttggatatatagtacagaaaagggaaaataaaaagtaggacatgactctctttagacagaagtctgcgcaaaacttcttgttagaactgataggtagatgcagatccacccacattagcctgtactagagtaggtcaggaactggagtacaattaaatctcctttttgaaaccgagtacaattagatcttaaatccatcattcctcatgattaaagcacaaaagaacctcatactggcaagctttcaatgataactgattaatcggtgccatgattgtgaacttgcgattctcatgatgaaaagaaacatgacccaaaattttggggatgccaggtgcatttggaccacatagctccaatctcaggtgaatataccagatgttccactggatccaatggccatgtatggcacatgtaaatactaggttagcacctcatccactgaacagttcacatgatttgcaaagcaaacggccagatggcatagctgccaagaacaatcaccaaagcaagctgaagtttggtgatttcttctaacaccatggtccactcgcctcaatctgtatgcttgtacatatgcatattttcatgggagtatcagcatgtcttaaaccattatcatccacttcttttccccaatcaattcaaacacctcataagtaacggatcatccaacttgtttattcagaccacaattccaagaattcttttgttcgcatcccagcggatgattcgacggcatcacttattttcagaatctctgtccgaatgatgctttgccactcaagaaaaactcttgacagatcgtcatctgatgaacacaaactcccagagcatcaccacatcacaggtcaggactccagacgcatcatcagaaatcaggtggagaaactctaggctaaaactagtgtgcgagaaagcccaagaactaggaaatcaagaacacGAggggataaaaacaacaagaggcaagaaatgcttcgagaaagcagcagaaaagtaccaaagaaaaacaaaacgttgaacactatggttacctttcttgcttggcgctctcttccgatgagatcgacggcagaggagatcgaagaggacggagaccagggaagtttaaagggggaagagaaaggtggttggggctcaattatcagcagatatatctgtagcagctggccagttgagcgaacttgctaacgattgcagtgttgcagattggcaggttcagctcagctcagcacgagcaacagcagcagctgctgcaataaagaccaacagcgaaaatggtacgagggaagaaggagctaccagcacgccacaaaacctaaataaaaagttggaacaaaataatactactatcaagaagatgtaggtgagagatagcagccggctgggaatgaggaagaggaggaGgaagaagaagaggtcttcttgctgat
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| CDS seq | atgagctggtggtgttgcattccaaaatccaagaaaggagagaatccttactctcatggcgttagcggtattccgcctgagaaaaacataaggcttttctcttattctgagttgagatcagcaacagaaaacttcaaccgcagtaataaaattggccgaggtggctttgggacagtatacaagggaactattagaaatgggcgagatgttgcggtgaaagttctttctgctgaatccaggcagggcgttcgagaatttttgacagaaattgatgttattaccaatgtgaagcatcccaaccttgttgaattaattggctgttgtgttgaaggaaacaatcgaattttggtatacgagtatttagaaaacagcagccttgaccgtgcattgttgggttctaatagcgaacctgcaaattttacttggagcataagatctgctatatgcataggaatcgccaaaggacttgcatacctgcatgaagagattgcgtcaccgattgtgcacagagatatcaaggctagcaatatacttcttgacaagctttacaaccccaagatcggggacttcggtttagccaagttattccctgataatatcacccacatcagtacccgtgttgctggaacgacaggctaccttgcaccggaatatgcatggcatggccaattgacgaagagagccgatatatacagttttggcgtccttgtacttgagatcgtaagtggcaagagtagttcaaggagtctcctggctgacgataagattctcctagagaagctggtggattcagaaatgggagattaccctgaagaggaggtcctccggtacatcaagacggccctcttctgcacgcaggcggcggcggcgcggcggccgtcgatgccgcaggtggtgacgatgctgtccaagcccatccgcatcaacgagcgcgagctcacggcgccgggctacatccacgactacaatggcacggtctccaaggccaccaactccagcaactcgaggttcaagcactcggcgtccgacacctccgacatgttcagcacggtggtgccacccacggtgtccgagatcagcccaaggtga
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| Protein seq | MSWWCCIPKSKKGENPYSHGVSGIPPEKNIRLFSYSELRSATENFNRSNKIGRGGFGTVYKGTIRNGRDVAVKVLSAESRQGVREFLTEIDVITNVKHPNLVELIGCCVEGNNRILVYEYLENSSLDRALLGSNSEPANFTWSIRSAICIGIAKGLAYLHEEIASPIVHRDIKASNILLDKLYNPKIGDFGLAKLFPDNITHISTRVAGTTGYLAPEYAWHGQLTKRADIYSFGVLVLEIVSGKSSSRSLLADDKILLEKLVDSEMGDYPEEEVLRYIKTALFCTQAAAARRPSMPQVVTMLSKPIRINERELTAPGYIHDYNGTVSKATNSSNSRFKHSASDTSDMFSTVVPPTVSEISPR |
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| Function | Cold-responsive protein kinase 1 [UniProtKB/Swiss-Prot:Q93YN1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0030400 | OsNaBo_04g0030400.01 | Chr04 | 34445234 | 34448817 | - | NAM | ||
| CDS seq | atgagctggtggtgttgcattccaaaatccaagaaaggagagaatccttactctcatggcgttagcggtattccgcctgagaaaaacataaggcttttctcttattctgagttgagatcagcaacagaaaacttcaaccgcagtaataaaattggccgaggtggctttgggacagtatacaagggaactattagaaatgggcgagatgttgcggtgaaagttctttctgctgaatccaggcagggcgttcgagaatttttgacagaaattgatgttattaccaatgtgaagcatcccaaccttgttgaattaattggctgttgtgttgaaggaaacaatcgaattttggtatacgagtatttagaaaacagcagccttgaccgtgcattgttgggttctaatagcgaacctgcaaattttacttggagcataagatctgctatatgcataggaatcgccaaaggacttgcatacctgcatgaagagattgcgtcaccgattgtgcacagagatatcaaggctagcaatatacttcttgacaagctttacaaccccaagatcggggacttcggtttagccaagttattccctgataatatcacccacatcagtacccgtgttgctggaacgacaggctaccttgcaccggaatatgcatggcatggccaattgacgaagagagccgatatatacagttttggcgtccttgtacttgagatcgtaagtggcaagagtagttcaaggagtctcctggctgacgataagattctcctagagaagctggtggattcagaaatgggagattaccctgaagaggaggtcctccggtacatcaagacggccctcttctgcacgcaggcggcggcggcgcggcggccgtcgatgccgcaggtggtgacgatgctgtccaagcccatccgcatcaacgagcgcgagctcacggcgccgggctacatccacgactacaatggcacggtctccaaggccaccaactccagcaactcgaggttcaagcactcggcgtccgacacctccgacatgttcagcacggtggtgccacccacggtgtccgagatcagcccaaggtga
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| Protein seq | MSWWCCIPKSKKGENPYSHGVSGIPPEKNIRLFSYSELRSATENFNRSNKIGRGGFGTVYKGTIRNGRDVAVKVLSAESRQGVREFLTEIDVITNVKHPNLVELIGCCVEGNNRILVYEYLENSSLDRALLGSNSEPANFTWSIRSAICIGIAKGLAYLHEEIASPIVHRDIKASNILLDKLYNPKIGDFGLAKLFPDNITHISTRVAGTTGYLAPEYAWHGQLTKRADIYSFGVLVLEIVSGKSSSRSLLADDKILLEKLVDSEMGDYPEEEVLRYIKTALFCTQAAAARRPSMPQVVTMLSKPIRINERELTAPGYIHDYNGTVSKATNSSNSRFKHSASDTSDMFSTVVPPTVSEISPR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0030400 | OsNaBo_04g0030400.02 | Chr04 | 34444987 | 34448820 | - | IsoSeq | ||
| CDS seq | cagcaagaagacctcttcttcttcCtcctcctcttcctcattcccagccggctgctatctctcacctacatcttcttgatagtagtattattttgttccaactttttatttaggttttgtggcgtgctggtagctccttcttccctcgtaccattttcgctgttggtctttattgcagcagctgctgctgttgctcgtgctgagctg
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| Protein seq | QQEDLFFFLLLFLIPSRLLSLTYIFLIVVLFCSNFLFRFCGVLVAPSSLVPFSLLVFIAAAAAVARAEL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr04 | 34445542 | 34445993 | - | OsNaBo_04g0030400.02 | OsNaBo_04g0030400.02,OsNaBo_04g0030400.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.667796 | 0.000000 | 3.890809 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0679200 | RBH | 1.289253 | 1.180357 | 3.052779 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g58250 | RBH | 0.564096 | 0.353852 | 0.694514 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0679200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0031170 | RBH | 0.375111 | 0.000000 | 2.815852 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0031960 | RBH | 0.160965 | 0.000000 | 0.623897 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0031530 | RBH | 0.849346 | 0.000000 | 4.415663 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0031350 | RBH | 0.176465 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0031620 | RBH | 6.873811 | 2.223497 | 7.994761 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0547000 | RBH | 6.5640415 | 3.5476 | 13.31036 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0030250 | RBH | 0.577770 | 0.064909 | 0.787129 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0552900 | RBH | 7.3126345 | 2.6319835 | 15.4261695 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0030710 | RBH | 0.709586 | 0.044183 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0030530 | RBH | 0.850745 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0030660 | RBH | 3.028760 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0031210 | RBH | 0.525578 | 0.099928 | 1.670841 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0031220 | RBH | 0.061130 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G030700 | RBH | 0.782183 | 0.000000 | 0.861626 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
