Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0023720 | OGI:04087560 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:29368319-29371138 | ||||||||
| Gene Symbol | LHY, LHY-like_chr.4, OsMYBR1, MYBR1, OsMYB1R35, MYB1R35, OsMYB511 | ||||||||||
| DNA seq | gaacaaagctttCcaacgttgttttctttagctcgcctgttattgtcttacagataataagttactgtataatttacatcagtacaacccttctacaactctatcaaaatacttgtcattgcatgacagccattgacctctgaacgctcccgcaatgggagcgaaattacaaacacacgacgaggaaaatggaaacatagaatatttgaactgtacatggccagacaagaaccacggccactccctgttttgtggagtactagcgcggtttcaatctgcctcttgtaacaggaaagcagcccctcctgcagtacatcagttcctactcatctgtgaacaaaatattagtagcaagcatctatagttgcagtgatctacgaggctccAaaaatttataagcacagcctcgtcatctctccgtctgcctcctcctgaggcgcctgtgacttcagcagcgcctcactatcagcAacacAtctcttgtacggcacaaagcctcgcctgcagttggaacctgggctcacacattttcttgaatctggagaaggtaccatttcatcttcgtttctgtttccgtttctatatgattctgtagtctctgaattatgagttgctgtttcaggcacactgcttgaggatgtatttgactccgtccaagatccttccctctgtataCccttgtaatctacagcttcagaagtttggtgttgatgctgttgatctgaggctaccacctgtgggtttgaaaactgggtgcaagtAacaccctcattatggtaggtgaagcatgggagagcagaatgcacggagAaaatttgtccgttaggaagataatacagaaactgctgtgtgttagtcagccatggGttccatgtatttgcttctgctgcaccatgggaagagAatttcccagttccactagttggtgtctcaactgaagcgtccacttccatgtctgccacagtttgcaggttcccggcatcaGgggctgacatctgatgtaaatcattcaccataaccctcttgccaaatagcctaaggactggaactcctgatctgtcacatgtaacttcttcatgatcgccattgcccttgacatcctgAaatgcatatttactatcaggattcaggatttagaaggcaccaactatatatcatgttgtgcaaggatacatcaaggcataaccagaatttcaagttccaacatatataaaattaaagaccatgctgacaaggtgaagaattattgacttgagcaaatagcttatatattcctgcacgatataaagaacatatgccttgcagaggatactatattttgtctcctaagaatatacctcgtcatttgtaggaggcaactccatagctaactcagcagttgctatgcttggtgtaggacatctctcttcaatatcaatcgtcgaggttggcgacccaccactctcacttcccagtgtatcagcccgtatctgtggtactgttaacactgacgtcggcgacccattgtcctggtcgtagagagactgcacctgcagctgaggcttctctagctgtttcagtgcagggacgttcttgctggctgtgctccctagcttgcgtgggtacggatgaacaggcttacgcttcggccgcggcgggggaatctgaattgatggtgcagcacccaagctgttgcaattgtccccagatgattctttgatgacctgcagccggagtgcaaagcagataacggtcaggaaacatggtctcgagtgtggcagcatggattgcaaagcagcctgctctccatgattgagcaacttacatcaccttgcaagcaacacaatccatggaggtttttcaagtcatttagggaattttttgtgcacgagaaggctgtgagaccttggagaagaacttctgtgcgtggctcctgatctgcacggcagtcttggtgcctatgtgctctgcaaccggagcgaggtatcctttgtcagtaaaattcttaccaaaccagaaactgtgcttcaccgttgcagcttcttgcagcggtaaaattagtaccttggatgcgtcgccaggctcggccatggagctgcagggcttccAAGaacagcttatgttcgtcctcggtccatttctccctttgcttcgttatcgtgtatggcttccgcgcctgcaaGgcaagacccacagcgtgagcttggtgttacaagatcttaactgcacgaaatttgcccctttttgctgtgatttgcaaggaggaggatttaccttaggaattcgcgcttcgtccatcatgtccatgccactggaatccagaggatctgtgaggttttccatgaggttttgatgcccaacatgatcagcaacaggtccttgatcattcctcgccttggtttcctacaAaagagagatggagaagtcaatttcagcaacgtgagaatagcagctgcttgctttgctccctttttccaacaaaagatttattactgtggcatcttattGggggaaaaaaatccaatcattctgccatgaaaagtggactccAaagaacaaaatttgccaccagatagactgatagaaggattcattacctgaaaacgcgccatctccagacttgaatcgaagattcaccaaagccAaactccaccgaacacaagaactctatctcagctcactatgtcccagaaccagccatgcgcttgcgccaacaaaagcaagaaccgcacaacccaaaccaccaaaaactccaatctttctcgagacaacctgatggaagcaggaagagcttggagagcagcagagaaGgagacgaggaggcaaggcaggaaGgggaaa
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| CDS seq | atggcgcgttttcaggaaaccaaggcgaggaatgatcaaggacctgttgctgatcatgttgggcatcaaaacctcatggaaaacctcacagatcctctggattccagtggcatggacatgatggacgaagcgcgaattcctaaggcgcggaagccatacacgataacgaagcaaagggagaaatggaccgaggacgaacataagctgttCTTggaagccctgcagctccatggccgagcctggcgacgcatccaagagcacataggcaccaagactgccgtgcagatcaggagccacgcacagaagttcttctccaaggtcatcaaagaatcatctggggacaattgcaacagcttgggtgctgcaccatcaattcagattcccccgccgcggccgaagcgtaagcctgttcatccgtacccacgcaagctagggagcacagccagcaagaacgtccctgcactgaaacagctagagaagcctcagctgcaggtgcagtctctctacgaccaggacaatgggtcgccgacgtcagtgttaacagtaccacagatacgggctgatacactgggaagtgagagtggtgggtcgccaacctcgacgattgatattgaagagagatgtcctacaccaagcatagcaactgctgagttagctatggagttgcctcctacaaatgacgaggatgtcaagggcaatggcgatcatgaagaagttacatgtgacagatcaggagttccagtccttaggctatttggcaagagggttatggtgaatgatttacatcagatgtcagcccCtgatgccgggaacctgcaaactgtggcagacatggaagtggacgcttcagttgagacaccaactagtggaactgggaaatTctcttcccatggtgcagcagaagcaaatacatggaaCccatggctgactaacacacagcagtttctgtattatcttcctaacggacaaatttTctccgtgcattctgctctcccatgcttcacctaccataatgagggtgtTacttgcacccagttttcaaacccacaggtggtagcctcagatcaacagcatcaacaccaaacttctgaagctgtagattacaaggGtatacagagggaaggatcttggacggagtcaaatacatcctcaagcagtgtgcctgaaacagcaactcataattcagagactacagaatcatatagaaacggaaacagaaacgaagatgaaatggtaccttctccagattcaagaaaatgtgtgagcccaggttccaactgcaggcgaggctttgtgccgtacaagagaTgtgtTgctgatagtgaggcgctgctgaagtcacaggcgcctcaggaggaggcagacggagagatgacgaggctgtgcttataa
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| Protein seq | MARFQETKARNDQGPVADHVGHQNLMENLTDPLDSSGMDMMDEARIPKARKPYTITKQREKWTEDEHKLFLEALQLHGRAWRRIQEHIGTKTAVQIRSHAQKFFSKVIKESSGDNCNSLGAAPSIQIPPPRPKRKPVHPYPRKLGSTASKNVPALKQLEKPQLQVQSLYDQDNGSPTSVLTVPQIRADTLGSESGGSPTSTIDIEERCPTPSIATAELAMELPPTNDEDVKGNGDHEEVTCDRSGVPVLRLFGKRVMVNDLHQMSAPDAGNLQTVADMEVDASVETPTSGTGKFSSHGAAEANTWNPWLTNTQQFLYYLPNGQIFSVHSALPCFTYHNEGVTCTQFSNPQVVASDQQHQHQTSEAVDYKGIQREGSWTESNTSSSSVPETATHNSETTESYRNGNRNEDEMVPSPDSRKCVSPGSNCRRGFVPYKRCVADSEALLKSQAPQEEADGEMTRLCL |
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| Function | Protein REVEILLE 2 [UniProtKB/Swiss-Prot:F4K5X6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0023720 | OsNaBo_04g0023720.01 | Chr04 | 29368319 | 29371138 | - | NAM | ||
| CDS seq | atggcgcgttttcaggaaaccaaggcgaggaatgatcaaggacctgttgctgatcatgttgggcatcaaaacctcatggaaaacctcacagatcctctggattccagtggcatggacatgatggacgaagcgcgaattcctaaggcgcggaagccatacacgataacgaagcaaagggagaaatggaccgaggacgaacataagctgttCTTggaagccctgcagctccatggccgagcctggcgacgcatccaagagcacataggcaccaagactgccgtgcagatcaggagccacgcacagaagttcttctccaaggtcatcaaagaatcatctggggacaattgcaacagcttgggtgctgcaccatcaattcagattcccccgccgcggccgaagcgtaagcctgttcatccgtacccacgcaagctagggagcacagccagcaagaacgtccctgcactgaaacagctagagaagcctcagctgcaggtgcagtctctctacgaccaggacaatgggtcgccgacgtcagtgttaacagtaccacagatacgggctgatacactgggaagtgagagtggtgggtcgccaacctcgacgattgatattgaagagagatgtcctacaccaagcatagcaactgctgagttagctatggagttgcctcctacaaatgacgaggatgtcaagggcaatggcgatcatgaagaagttacatgtgacagatcaggagttccagtccttaggctatttggcaagagggttatggtgaatgatttacatcagatgtcagcccCtgatgccgggaacctgcaaactgtggcagacatggaagtggacgcttcagttgagacaccaactagtggaactgggaaatTctcttcccatggtgcagcagaagcaaatacatggaaCccatggctgactaacacacagcagtttctgtattatcttcctaacggacaaatttTctccgtgcattctgctctcccatgcttcacctaccataatgagggtgtTacttgcacccagttttcaaacccacaggtggtagcctcagatcaacagcatcaacaccaaacttctgaagctgtagattacaaggGtatacagagggaaggatcttggacggagtcaaatacatcctcaagcagtgtgcctgaaacagcaactcataattcagagactacagaatcatatagaaacggaaacagaaacgaagatgaaatggtaccttctccagattcaagaaaatgtgtgagcccaggttccaactgcaggcgaggctttgtgccgtacaagagaTgtgtTgctgatagtgaggcgctgctgaagtcacaggcgcctcaggaggaggcagacggagagatgacgaggctgtgcttataa
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| Protein seq | MARFQETKARNDQGPVADHVGHQNLMENLTDPLDSSGMDMMDEARIPKARKPYTITKQREKWTEDEHKLFLEALQLHGRAWRRIQEHIGTKTAVQIRSHAQKFFSKVIKESSGDNCNSLGAAPSIQIPPPRPKRKPVHPYPRKLGSTASKNVPALKQLEKPQLQVQSLYDQDNGSPTSVLTVPQIRADTLGSESGGSPTSTIDIEERCPTPSIATAELAMELPPTNDEDVKGNGDHEEVTCDRSGVPVLRLFGKRVMVNDLHQMSAPDAGNLQTVADMEVDASVETPTSGTGKFSSHGAAEANTWNPWLTNTQQFLYYLPNGQIFSVHSALPCFTYHNEGVTCTQFSNPQVVASDQQHQHQTSEAVDYKGIQREGSWTESNTSSSSVPETATHNSETTESYRNGNRNEDEMVPSPDSRKCVSPGSNCRRGFVPYKRCVADSEALLKSQAPQEEADGEMTRLCL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.236089 | 1.963763 | 0.992883 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0583900 | RBH | 0.727701 | 0.248759 | 0.536033 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g49450 | RBH | 0.478377 | 0.161224 | 0.139282 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0583900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0024370 | RBH | 0.049204 | 1.303595 | 0.254634 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0025120 | RBH | 0.000000 | 0.0 | 0.101412 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0024810 | RBH | 0.000000 | 0.000000 | 0.557719 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0024590 | RBH | 0.052715 | 0.058606 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0024770 | RBH | 0.388040 | 1.161304 | 2.261372 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0465500 | RBH | 0.47155 | 1.914299 | 86.383331 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023540 | RBH | 0.000000 | 0.079681 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0468500 | RBH | 5.43793 | 3.408679 | 12.680205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0024030 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0023820 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0023960 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024350 | RBH | 0.000000 | 0.000000 | 0.513281 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0024550 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G023810 | RBH | 0.000000 | 0.000000 | 0.073659 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0029060 | RBH | 0.139219 | 0.0 | 0.826661 |
