Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0019440 | OGI:04078000 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:25650819-25652201 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtttttccgaaaagatcgcgaggcaaaagaccaaccgcctgtgctatgagtgaggaactgaagcgcgacttcgagatcggcgaggagattgggcgcggccgcttcggcgtcgtccaccgctgcgcctcccgctccaccggcgaggcctacgccgtcaagtcggtcgaccgctcccgcctctccgacgacctggaccgctcgctcgccgcgctcgagcccaagctggcccggctcgccgccgcgggcaacccgggcgtcgtgcaggtgcacgccgtctacgaggacgacgactggacgcacacggtcatggacctctgcacggggcccgacctcctcgactgggtccgcctccgctgcggCcagcccgtgccggagcccgacgccgccgccgtcgtcgcgcagatcgccgaggccctcgcgctctgccaccgccgcggcgtcgcgcaccgcgacgtcaagcccgacaacgtcctcctcgacgccaccggggacgggccgccacgggtgcgcctcgccgacttcggctccgccgcgtgggtcggcgacgggatcagcgccgaggggctcgtggggacgccgcactacgtcgcgcccgaggtggtcgccgggggcgagtacggggagaaggccgacgtgtggagcgcgggggtggtcatgtacgtgctcctcaccggcggcgcgctcccgttcggcggcgagacggcctccgacgtgttcgccgccgtcctgcggggcaacctgaggttcccgccgaggctgttctccggcgtgtcgccggctgccaaggacctgatgcggcggatgatgtgccgcgacgtctacaggaggttctccgccgagcaagtcctgagtaagcgtcacaccatcaaaacagatttctcttcttcaccttgtacattaacacctgataaattctttctccaaaacgcatgattatttctctggacttagttgtctctgtctgcctataattttactaaatcttgttttggattgcataatgcagggcacccgtggatcgtgagcggaggaggagcacgcgatgtgcagccgacctgaagaatccgtatcagatttccaaataatacggcttcttgtgtatacgcctttgtaaatgcgagtacgcctacgagagaggaagatgcattggtagaagaagtagagaGTGgTGGAGAGTAGTAACACTGTATACATCCAACCAGGAGTGGTGAGGAGGAGGAGGTCGCTAGCCTCTGTGTTTTTTTCGCTCTTTCTTAAGCCCTTTTTAGTTGCCGCTTttttgcctgagagaagaacgcttgcttgtgtaatgggagtgctgctgtgaatactaaccctgcttgtataattaagatcgttaataaaaatgagagtggtctctcc
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| CDS seq | atgagtgaggaactgaagcgcgacttcgagatcggcgaggagattgggcgcggccgcttcggcgtcgtccaccgctgcgcctcccgctccaccggcgaggcctacgccgtcaagtcggtcgaccgctcccgcctctccgacgacctggaccgctcgctcgccgcgctcgagcccaagctggcccggctcgccgccgcgggcaacccgggcgtcgtgcaggtgcacgccgtctacgaggacgacgactggacgcacacggtcatggacctctgcacggggcccgacctcctcgactgggtccgcctccgctgcggCcagcccgtgccggagcccgacgccgccgccgtcgtcgcgcagatcgccgaggccctcgcgctctgccaccgccgcggcgtcgcgcaccgcgacgtcaagcccgacaacgtcctcctcgacgccaccggggacgggccgccacgggtgcgcctcgccgacttcggctccgccgcgtgggtcggcgacgggatcagcgccgaggggctcgtggggacgccgcactacgtcgcgcccgaggtggtcgccgggggcgagtacggggagaaggccgacgtgtggagcgcgggggtggtcatgtacgtgctcctcaccggcggcgcgctcccgttcggcggcgagacggcctccgacgtgttcgccgccgtcctgcggggcaacctgaggttcccgccgaggctgttctccggcgtgtcgccggctgccaaggacctgatgcggcggatgatgtgccgcgacgtctacaggaggttctccgccgagcaagtcctgaggcacccgtggatcgtgagcggaggaggagcacgcgatgtgcagccgacctga
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| Protein seq | MSEELKRDFEIGEEIGRGRFGVVHRCASRSTGEAYAVKSVDRSRLSDDLDRSLAALEPKLARLAAAGNPGVVQVHAVYEDDDWTHTVMDLCTGPDLLDWVRLRCGQPVPEPDAAAVVAQIAEALALCHRRGVAHRDVKPDNVLLDATGDGPPRVRLADFGSAAWVGDGISAEGLVGTPHYVAPEVVAGGEYGEKADVWSAGVVMYVLLTGGALPFGGETASDVFAAVLRGNLRFPPRLFSGVSPAAKDLMRRMMCRDVYRRFSAEQVLRHPWIVSGGGARDVQPT |
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| Function | Phosphoenolpyruvate carboxylase kinase 1 [UniProtKB/Swiss-Prot:Q9SPK4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0019440 | OsNaBo_04g0019440.01 | Chr04 | 25650819 | 25652201 | + | NAM | ||
| CDS seq | atgagtgaggaactgaagcgcgacttcgagatcggcgaggagattgggcgcggccgcttcggcgtcgtccaccgctgcgcctcccgctccaccggcgaggcctacgccgtcaagtcggtcgaccgctcccgcctctccgacgacctggaccgctcgctcgccgcgctcgagcccaagctggcccggctcgccgccgcgggcaacccgggcgtcgtgcaggtgcacgccgtctacgaggacgacgactggacgcacacggtcatggacctctgcacggggcccgacctcctcgactgggtccgcctccgctgcggCcagcccgtgccggagcccgacgccgccgccgtcgtcgcgcagatcgccgaggccctcgcgctctgccaccgccgcggcgtcgcgcaccgcgacgtcaagcccgacaacgtcctcctcgacgccaccggggacgggccgccacgggtgcgcctcgccgacttcggctccgccgcgtgggtcggcgacgggatcagcgccgaggggctcgtggggacgccgcactacgtcgcgcccgaggtggtcgccgggggcgagtacggggagaaggccgacgtgtggagcgcgggggtggtcatgtacgtgctcctcaccggcggcgcgctcccgttcggcggcgagacggcctccgacgtgttcgccgccgtcctgcggggcaacctgaggttcccgccgaggctgttctccggcgtgtcgccggctgccaaggacctgatgcggcggatgatgtgccgcgacgtctacaggaggttctccgccgagcaagtcctgaggcacccgtggatcgtgagcggaggaggagcacgcgatgtgcagccgacctga
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| Protein seq | MSEELKRDFEIGEEIGRGRFGVVHRCASRSTGEAYAVKSVDRSRLSDDLDRSLAALEPKLARLAAAGNPGVVQVHAVYEDDDWTHTVMDLCTGPDLLDWVRLRCGQPVPEPDAAAVVAQIAEALALCHRRGVAHRDVKPDNVLLDATGDGPPRVRLADFGSAAWVGDGISAEGLVGTPHYVAPEVVAGGEYGEKADVWSAGVVMYVLLTGGALPFGGETASDVFAAVLRGNLRFPPRLFSGVSPAAKDLMRRMMCRDVYRRFSAEQVLRHPWIVSGGGARDVQPT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.685623 | 0.0 | 3.219694 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0517500 | RBH | 0.0 | 0.817552 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g43710 | RBH | 0.0 | 0.548976 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0517500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0019980 | RBH | 0.464978 | 0.0 | 2.014169 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0020770 | RBH | 0.105041 | 0.0 | 0.520872 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0020480 | RBH | 3.786765 | 3.645893 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0020200 | RBH | 0.143397 | 0.166179 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0020410 | RBH | 2.980830 | 2.811964 | 2.279307 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0404700 | RBH | 5.855792 | 15.4908345 | 2.8707835 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0019200 | RBH | 0.606227 | 0.0 | 0.098823 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0405700 | RBH | 5.9159205 | 6.035528 | 6.8538965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0019690 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0019540 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0019660 | RBH | 0.0 | 10.325843 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0020030 | RBH | 0.000000 | 0.000000 | 0.724885 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0020200 | RBH | 0.373881 | 5.601254 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G019470 | RBH | 0.250596 | 0.701334 | 1.141892 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0025540 | RBH | 1.707701 | 9.508213 | 22.212877 |
