Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0016060 | OGI:04071230 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:23136215-23138902 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctatgatccatctagagatgaaaaacagatggtgaataaactcaatccggaatgggcggcaaacgagatcCtaTttgtcagggagcaggacaagccaTttctctcttcttcttttcttccccattctcagccagttcatcactcatgtgcctttgttctaacctcttcaccattcttgctatcaatgttcTatacttctacaatctaactgtctaaggccactcaccagaagtcaccgcaagaacaagtgcctccactgaaatgatggaatctgttggcgtctcggaccacaatttccctttcaaatagcttggacactagcttggtgaactcatggcaatcgccgcaaactctgaggttcttggcaatccttagaggtgtacctgaggcagtgctgatcaaaccaaacgatatcgcaagcctctcgctgtgcctatgcagcaaatctatcttctcttcttcgctcacatcatgcagaacaaaactagtatcctcgacatactgaccttctcttctcagtttttcagttatctcggcaagtttgagatgaatagcctgtgagtctctgtgagAgtgatctcttgcagtgaaagtgtggacagtgtttcctatctcaatccagctgcatgctgggtcttttctcaaaccctgttctgtcatcttggttctaatctccttgacattattccacttgcccatttcggcgaaaacatttgatacaaggacataattacctgggTtatctggttccaactcaagaagTttatcagttgcaatcatagcaagctcatggttcttgtgtatacgacaTgccccaaggagtgcacaccacaccacagattttggttccaaaggcatagatttaatgaaCttgtaagcttcttcggTCtgtcctgagcgaccaagAagatcaactacacaggcataatgttcctgccatggttgtaacttgtatttgcttaccatcatatccagataaaatttaccctcatcgacaagttttgaatgactacaggcatagagtagagcaagaaaagaaacatgatcaggagatacacctgtttccagcattcTcttgAaaatatatatggcttgcttgccatgcccatgcatCccagtagcattaatcatcgctgtccagagaacaacatctttacacttcgcctcatcaaaaactttgagagcgtagttcatgcttccAcaaccagaatacatgtccacaagggagctaaccacagcaccttccacgggaaatttacctctgataaggaaaccatgaatttccTttccttttgtcaaggatgacaatccagcAAttgctcccagaataccaactagtgctacagaatcgggttggatgcctgcattcagcatcttgccaaacaaggcaacagcttcatgtaacagcccattctccgcaaaacagtttaccatactagtccaggtaacaatgtccTttttgtctaacatttcAaatatattaagcgcatagcaaacctctccacactctccatataTatctatgAttctattcttcagtatcaagtcaagcaagccatttctaatagcataagagtgcacttgctttaacagtgagatgcttttcaaaccaCtgcatgcttccaaaatgcttcccatcatcatAggatccaccttaatgccctctttctgtgctgttctaaactttccgattgcctcAgaataccgagaacTttgcgcgtaacaggcaatgattgttgtccatgacacatggtccttaatcctcatcctgtcaaatacacgggcggagcactccacggagtagcactttatgtacatgtccatcaatgtattagctatctgcaaatcactatcaagcctttgcttaacagcatatgcgtgaacctCCctgccattgattaaCctacccAaatgacccaCtgcagaCaataagctcacaatgcAAgcatgatcaggattgaaaccattctgtaccatttcgccAaaaaaatcgatggcctcagcatatagcctattttggacataacaggagagcattgagttCcatgatatgtagtccttgtcaccaatctcacggaatactctgagagcgctatccacccaaccgcatcttgcatacatgacaagcaaggcattgcattggatattgaactcggtaccgcatttcagaagcgctgcatgtagctcccttccatggttcagctgagcaagctctgcacagacctgtagcacacCaacggttgtgtaagaattcatactgaagccgtcgctctgcatccgtcggaacaggtcgagagcctccaagaacatcccgttctgcacgcagcctgatatagccgagttccatgaggccacatccctcccgtcgcgcatccactcgaacacccgcagcgccgaatccaagaggccgcacttggcgtacatcccgacgagcgcattggccacgagcgtgctccggtcgaggccgctcTtcaccgccagcccgtgcaCctcgctcccgcacctcccgtCcccctccgcgccgcacgccttgagcacggacgcgagcgtgcaCccgtcgggcgccgcccccgccacgggctccgacgcccgcatcgcccggtagacgCccacggcctCgccggcgcccccggacgacaggcacgccccgatgagcgcgttccatgagaagacggtccgggcgggcat
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| CDS seq | atgcccgcccggaccgtcttctcatggaacgcgctcatcggggcgtgcctgtcgtccgggggcgccggcGaggccgtggGcgtctaccgggcgatgcgggcgtcggagcccgtggcgggggcggcgcccgacggGtgcacgctcgcgtccgtgctcaaggcgtgcggcgcggaggggGacgggaggtgcgggagcgagGtgcacgggctggcggtgaAgagcggcctcgaccggagcacgctcgtggccaatgcgctcgtcgggatgtacgccaagtgcggcctcttggattcggcgctgcgggtgttcgagtggatgcgcgacgggagggatgtggcctcatggaactcggctatatcaggctgcgtgcagaacgggatgttcttggaggctctcgacctgttccgacggatgcagagcgacggcttcagtatgaattcttacacaaccgttGgtgtgctacaggtctgtgcagagcttgctcagctgaaccatggaagggagctacatgcagcgcttctgaaatgcggtaccgagttcaatatccaatgcaatgccttgcttgtcatgtatgcaagatgcggttgggtggatagcgctctcagagtattccgtgagattggtgacaaggactacatatcatgGaactcaatgctctcctgttatgtccaaaataggctatatgctgaggccatcgattttttTggcgaaatggtacagaatggtttcaatcctgatcatgcTTgcattgtgagcttattGtctgcaGtgggtcattTgggtagGttaatcaatggcagGGaggttcacgcatatgctgttaagcaaaggcttgatagtgatttgcagatagctaatacattgatggacatgtacataaagtgctactccgtggagtgctccgcccgtgtatttgacaggatgaggattaaggaccatgtgtcatggacaacaatcattgcctgttacgcgcaaAgttctcggtattcTgaggcaatcggaaagtttagaacagcacagaaagagggcattaaggtggatccTatgatgatgggaagcattttggaagcatgcaGtggtttgaaaagcatctcactgttaaagcaagtgcactcttatgctattagaaatggcttgcttgacttgatactgaagaatagaaTcatagatAtatatggagagtgtggagaggtttgctatgcgcttaatatattTgaaatgttagacaaaaAggacattgttacctggactagtatggtaaactgttttgcggagaatgggctgttacatgaagctgttgccttgtttggcaagatgctgaatgcaggcatccaacccgattctgtagcactagttggtattctgggagcaaTTgctggattgtcatccttgacaaaaggaaAggaaattcatggtttccttatcagaggtaaatttcccgtggaaggtgctgtggttagctcccttgtggacatgtattctggttgTggaagcatgaactacgctctcaaagtttttgatgaggcgaagtgtaaagatgttgttctctggacagcgatgattaatgctactggGatgcatgggcatggcaagcaagccatatatatttTcaagAgaatgctggaaacaggtgtatctcctgatcatgtttcttttcttgctctactctatgcctgtagtcattcaaaacttgtcgatgagggtaaattttatctggatatgatggtaagcaaatacaagttacaaccatggcaggaacattatgcctgtgtagttgatctTcttggtcgctcaggacaGAccgaagaagcttacaaGttcattaaatctatgcctttggaaccaaaatctgtggtgtggtgtgcactccttggggcAtgtcgtatacacaagaaccatgagcttgctatgattgcaactgataaActtcttgagttggaaccagataAcccagatggatcatag
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| Protein seq | MPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPDGS |
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| Function | Pentatricopeptide repeat-containing protein At3g63370, chloroplastic [UniProtKB/Swiss-Prot:Q9M1V3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0016060 | OsNaBo_04g0016060.01 | Chr04 | 23136215 | 23138902 | - | NAM | ||
| CDS seq | atgcccgcccggaccgtcttctcatggaacgcgctcatcggggcgtgcctgtcgtccgggggcgccggcGaggccgtggGcgtctaccgggcgatgcgggcgtcggagcccgtggcgggggcggcgcccgacggGtgcacgctcgcgtccgtgctcaaggcgtgcggcgcggaggggGacgggaggtgcgggagcgagGtgcacgggctggcggtgaAgagcggcctcgaccggagcacgctcgtggccaatgcgctcgtcgggatgtacgccaagtgcggcctcttggattcggcgctgcgggtgttcgagtggatgcgcgacgggagggatgtggcctcatggaactcggctatatcaggctgcgtgcagaacgggatgttcttggaggctctcgacctgttccgacggatgcagagcgacggcttcagtatgaattcttacacaaccgttGgtgtgctacaggtctgtgcagagcttgctcagctgaaccatggaagggagctacatgcagcgcttctgaaatgcggtaccgagttcaatatccaatgcaatgccttgcttgtcatgtatgcaagatgcggttgggtggatagcgctctcagagtattccgtgagattggtgacaaggactacatatcatgGaactcaatgctctcctgttatgtccaaaataggctatatgctgaggccatcgattttttTggcgaaatggtacagaatggtttcaatcctgatcatgcTTgcattgtgagcttattGtctgcaGtgggtcattTgggtagGttaatcaatggcagGGaggttcacgcatatgctgttaagcaaaggcttgatagtgatttgcagatagctaatacattgatggacatgtacataaagtgctactccgtggagtgctccgcccgtgtatttgacaggatgaggattaaggaccatgtgtcatggacaacaatcattgcctgttacgcgcaaAgttctcggtattcTgaggcaatcggaaagtttagaacagcacagaaagagggcattaaggtggatccTatgatgatgggaagcattttggaagcatgcaGtggtttgaaaagcatctcactgttaaagcaagtgcactcttatgctattagaaatggcttgcttgacttgatactgaagaatagaaTcatagatAtatatggagagtgtggagaggtttgctatgcgcttaatatattTgaaatgttagacaaaaAggacattgttacctggactagtatggtaaactgttttgcggagaatgggctgttacatgaagctgttgccttgtttggcaagatgctgaatgcaggcatccaacccgattctgtagcactagttggtattctgggagcaaTTgctggattgtcatccttgacaaaaggaaAggaaattcatggtttccttatcagaggtaaatttcccgtggaaggtgctgtggttagctcccttgtggacatgtattctggttgTggaagcatgaactacgctctcaaagtttttgatgaggcgaagtgtaaagatgttgttctctggacagcgatgattaatgctactggGatgcatgggcatggcaagcaagccatatatatttTcaagAgaatgctggaaacaggtgtatctcctgatcatgtttcttttcttgctctactctatgcctgtagtcattcaaaacttgtcgatgagggtaaattttatctggatatgatggtaagcaaatacaagttacaaccatggcaggaacattatgcctgtgtagttgatctTcttggtcgctcaggacaGAccgaagaagcttacaaGttcattaaatctatgcctttggaaccaaaatctgtggtgtggtgtgcactccttggggcAtgtcgtatacacaagaaccatgagcttgctatgattgcaactgataaActtcttgagttggaaccagataAcccagatggatcatag
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| Protein seq | MPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPDGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.589359 | 2.011736 | 1.198344 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0469400 | RBH | 1.760141 | 2.541341 | 0.360990 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g39410 | RBH | 0.733525 | 1.212815 | 0.045567 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0469400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0016540 | RBH | 0.204674 | 0.0 | 0.476785 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0017290 | RBH | 0.000000 | 0.463739 | 1.589644 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0017010 | RBH | 0.173739 | 0.000000 | 0.871772 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0016740 | RBH | 0.117679 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0016970 | RBH | 1.236396 | 2.849090 | 0.852711 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0365100 | RBH | 4.474183 | 1.8358135 | 1.398162 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0015770 | RBH | 0.314503 | 0.132341 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0364200 | RBH | 1.4976045 | 0.515104 | 1.636578 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0016320 | RBH | 0.076120 | 0.037422 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0016200 | RBH | 0.747185 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0016190 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0016710 | RBH | 0.557270 | 0.098484 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0016790 | RBH | 0.084237 | 0.572056 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G016010 | RBH | 0.201930 | 0.383541 | 0.302991 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020900 | SBH | 0.251418 | 2.098219 | 0.0 |
