Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0012680 | OGI:04064850 | 13/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:20350152-20354354 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aactaaatattcatcctttcctcttgtccaaagtgattctacagataaccagacagccccagtagtcatgtacataagtcgacctccctagggtaatgaaaaacagaaagactagggggaatgacataagttaagttgtggttacatcttgaagcatttcctgcgcacaaaaggcagacgccatcttatggcctacaagttgtacatctgagaatatatatacattcatacaggctaaggtaaagaggtaatccagctcttagtaccaacctgccaactacaataagaaataatcaactcaagttgcaagaaagaaagagtagctagtaactacagctacttgtactaattgaactgctacataccaatgatgtatatgcccatttctagctggtccatgccatctatagtcgatggatgacatctaatcatctcgagcctccaatctacaagacaccaagatggagcttacatgttccgtgctgtgctcAaaagagagaagcacagcaccttgcaatgaggcattcatatctacaaggcctacagagaagaatggagattgttcaactcagatgtttttgtgcagaaattctcatcaggttgctgaagaaaacaacaaaaacaaattttcaataatttcccaagctttacatgtgaagtgatagaagggcacccacacatatcctatgatcatttacctggttgtgtgggctgctacttgacacctgagaagtgtgataggttgcaaaacctagatgctgaaaaagtgtcaatcacgttagtactatttccaatactcaaaggctagaatgggttcaatcaaaagttcttaataccgtcgtgaaagtcggatctaagccagagggcatttcatcatagctaattgggcccatcggacttgaaagatcaatcccctagattAaaaaggaaataaacaactatctcaatcccctggattaataggaaataaacaacttccaatacaacaccactaaaagaacatcatatgtagggaagcaatttgtatgtaacttcataccctgtaggttttataggtcggagtttgggtacccagtggggacatgttaggaggaccctcgaaagcctgcatgttgaaaaatgccatgactatttgttgcactaagtaaaaaaatgcagcacagcataatgcaaaattgttagtaagttagattatcgacaccaatgcatggaacattgcagcttaacatgaagtgatgaagacaacaactttatatcagataaaatagtacctcagcacaactgtacaacaagcgaacttaaaaaatgcaaaacataaacttttcccaacaaagttctctgccaaaaaaatgtgggatatgggtagaatcccagacaacagacgaatccatagtttgaaatgaaaaacatattcagacttacaatttgactaaacaaaaaattggcgaaaaatacctgaaacatgtttccagattgagaaccacctaacaaagcatactctgaaggttgttctgagtgaaccttctgcttctttcgtaaacctttttcaatgcaatttcttgattggatcttatttttctgccccttcttctttgactcttttgctgttgtgccacttgatttgtccatgatattttctgcttgagtgccatttgtaatagaaggtaaggaaaccttaaggttctgaacatcagtctgggtcagagttgcatcgacacaagtttgtttctgtaggatttcttcaactttgttgctaagatctacccaacattggtccagtactctgtaggattcctcacattctgatgctcgagtaacaagcctaacatactttgggcacatgtattgatagcgactggaggattctgataatttatctgcttgaattgcttgaccttgaacatctccagacatcaaagtcctagcatattttgtccagcgcttcataatatatctgtctggtagatattttatatccattgcatctaaaattttcagcgcatggctacacaagaaaccatttctttcaaacttcttacatgagcatgaaacagtctgctcagtagggtttccataaactgtatatcgcttctctttctcaacaactgaaacgacatactcacgacaagggccactttcatcacggtttacaatgtaagctgactggaattcttcgtattcttcttgaaaaagcggaaagatcgtattggtataagcctcaaaagcttgtgtcaggataggagctttaattttaaagtacagcaactttagccttgaactatactcaacctccaattctttccgccgcctatcattaataactgtctcaagatgcctcaacaataaaagaatatttacctcaggtctcaaatgatcccgcacatcagactggaagcggtcgttcaatcgtgtgcctttcattccagctgaaaagacccctctcatataaggtctagcccatttttctttttcttcaaatacctttttcaaccatacattatcatgaaggttatgcttattgatcatagcatcccaagaagtgagaaattccgtctcctcttcatacaaattgatgcatgccttgaactccttcatgaaatcactgtcacttttaagctgatttatgttcctcgttgcagcatgctttaggtgccatgcacatataacatgggttgtgtctggcatcactatagagacagcctttgctacaaccgcatcttgatgtgaaaagaaagttttgggtgctcgtccagacattgcatgcaagaaagtctcaaacagccactggaaagactctgcagtctcgtcatacatgagcgctaacccaaaaacaataggctcaccaaaattgttacaaccgacaaaagaggcaaaatgacggaggcttatactgttcctagacaccacatcaaatgcaataacatcaccgaactgactgtagtcagtaatcatccttggatcggcccagaaaacatttgccaccttatcctcgacatccaactgcacggcatggtagaacgcggggttagccagagactggtcttgaaaataatttaacaaagcaccagcttctccatacttcatctcccattgcctcctggttcgcagcggctgccggcgcccttcccctgcactcgcagtactattctcttcggtagaattctgccctcccacctcacccccgtccatcagaagatcaggcggcgtaacggcatcgagcaatgtcgtccagtgcacgacattgggctgcagaggattgggcatgcaggatgtagcgaagagcgggtggttgtgccgcggctggaaggcgtaaacctccagcttggcgccgggcttcttgcggcggatgacgaggtgcgcgttgcagccggtcctcgagtccggcatcggcaccatgtggttgccccgcttgacgttggccctgtagccctcgcgggagcaggcgaacttccgggaggtgatctcgccggtcttcttgctcttgttggcgtactccttccggacgttgaaccctactttccagccgtagtagcggtagaactcgtacgcctcgtgctcgctctcgaactccatccccatccgcggcgtgtactcctccgggcgtgtaggagcggcccggaatccgcccctccccaccgcggcaacggtggcggtggcggtggcggcggcggctcccgtcaagggatttcgggatgccgcgtgggtcgtcgtggcatcagttgccctcaagggaattcgggaggccactgcggcggcggcggcggcgggccttcgggacaccgaggtggcggtagtggtggtggtggccctcgtggcggtccgggacgccgcggtggtcgccgggatgttccGggcggcgacgggggcagtggtcccggggggcttccgaggtagcacaccggtggtggcggcggctacccccgaggccttccgggtcgccgccgcgggggcggcggcggatgtagacccagattcctttcgggatggcacgggggctgcggcggcggcggtagccggcgatccggatggcggcgcggcggaggcattccggccaggcgcgggtgtgattggggggttaggttttggtggggcggcggcctcattgcctgaggcggcggggtgtggaggcggggaagcgggcgctggcgctggagctggagtaggggggtgctccggtggagggggctctgccggcgagctcat
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| CDS seq | atgagctcgccggcagagccccctccaccggagcacccccctactccagctccagcgccagcgcccgcttccccgcctccacaccccgccgcctcaggcaatgaggccgccgccccaccaaaacctaaccccccaatcacacccgcgcctggccggaatgcctccgccgcgccgccatccggatcgccggctaccgccgccgccgcagcccccgtgccatcccgaaaggaatctgggtctacatccgccgccgcccccgcggcggcgacccggaaggcctcgggggtagccgccgccaccaccggtgtgctacctcggaagccccccgggaccactgcccccgtcgccgccCggaacatcccggcgaccaccgcggcgtcccggaccgccacgagggccaccaccaccactaccgccacctcggtgtcccgaaggcccgccgccgccgccgccgcagtggcctcccgaattcccttgagggcaactgatgccacgacgacccacgcggcatcccgaaatcccttgacgggagccgccgccgccaccgccaccgccaccgttgccgcggtggggaggggcggattccgggccgctcctacacgcccggaggagtacacgccgcggatggggatggagttcgagagcgagcacgaggcgtacgagttctaccgctactacggctggaaagtagggttcaacgtccggaaggagtacgccaacaagagcaagaagaccggcgagatcacctcccggaagttcgcctgctcccgcgagggctacagggccaacgtcaagcggggcaaccacatggtgccgatgccggactcgaggaccggctgcaacgcgcacctcgtcatccgccgcaagaagcccggcgccaagctggaggtttacgccttccagccgcggcacaaccacccgctcttcgctacatcctgcatgcccaatcctctgcagcccaatgtcgtgcactggacgacattgctcgatgccgttacgccgcctgatcttctgatggacggggaatgtgaggaatcctacagagtactggaccaatgttgggtagatcttagcaacaaagttgaagaaatcctacagaaacaaacttgtgtcgatgcaactctgacccagactgatgttcagaaccttaaggtttccttaccttctattacaaatggcactcaagcagaaaatatcatggacaaatcaagtggcacaacagcaaaagagtcaaagaagaaggggcagaaaaataagatccaatcaagaaattgcattgaaaaaggtttacgaaagaagcagaaggttcactcagaacaaccttcagagtatgctttgttaggtggttctcaatctggaaacatgtttcaggctttcgagggtcctcctaacatgtccccactgggtacccaaactccgacctataaaacctacagggggattgatctttcaagtccgatgggcccaattagctatgatgaaatgccctctggcttagatccgactttcacgacgcatctaggttttgcaacctatcacacttctcaggtgtcaagtagcagcccacacaaccaggccttgtag
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| Protein seq | MSSPAEPPPPEHPPTPAPAPAPASPPPHPAASGNEAAAPPKPNPPITPAPGRNASAAPPSGSPATAAAAAPVPSRKESGSTSAAAPAAATRKASGVAAATTGVLPRKPPGTTAPVAARNIPATTAASRTATRATTTTTATSVSRRPAAAAAAVASRIPLRATDATTTHAASRNPLTGAAAATATATVAAVGRGGFRAAPTRPEEYTPRMGMEFESEHEAYEFYRYYGWKVGFNVRKEYANKSKKTGEITSRKFACSREGYRANVKRGNHMVPMPDSRTGCNAHLVIRRKKPGAKLEVYAFQPRHNHPLFATSCMPNPLQPNVVHWTTLLDAVTPPDLLMDGECEESYRVLDQCWVDLSNKVEEILQKQTCVDATLTQTDVQNLKVSLPSITNGTQAENIMDKSSGTTAKESKKKGQKNKIQSRNCIEKGLRKKQKVHSEQPSEYALLGGSQSGNMFQAFEGPPNMSPLGTQTPTYKTYRGIDLSSPMGPISYDEMPSGLDPTFTTHLGFATYHTSQVSSSSPHNQAL |
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| Function | Protein FAR1-RELATED SEQUENCE 12 [UniProtKB/Swiss-Prot:Q3E7I5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0012680 | OsNaBo_04g0012680.01 | Chr04 | 20350152 | 20354354 | - | NAM | ||
| CDS seq | atgagctcgccggcagagccccctccaccggagcacccccctactccagctccagcgccagcgcccgcttccccgcctccacaccccgccgcctcaggcaatgaggccgccgccccaccaaaacctaaccccccaatcacacccgcgcctggccggaatgcctccgccgcgccgccatccggatcgccggctaccgccgccgccgcagcccccgtgccatcccgaaaggaatctgggtctacatccgccgccgcccccgcggcggcgacccggaaggcctcgggggtagccgccgccaccaccggtgtgctacctcggaagccccccgggaccactgcccccgtcgccgccCggaacatcccggcgaccaccgcggcgtcccggaccgccacgagggccaccaccaccactaccgccacctcggtgtcccgaaggcccgccgccgccgccgccgcagtggcctcccgaattcccttgagggcaactgatgccacgacgacccacgcggcatcccgaaatcccttgacgggagccgccgccgccaccgccaccgccaccgttgccgcggtggggaggggcggattccgggccgctcctacacgcccggaggagtacacgccgcggatggggatggagttcgagagcgagcacgaggcgtacgagttctaccgctactacggctggaaagtagggttcaacgtccggaaggagtacgccaacaagagcaagaagaccggcgagatcacctcccggaagttcgcctgctcccgcgagggctacagggccaacgtcaagcggggcaaccacatggtgccgatgccggactcgaggaccggctgcaacgcgcacctcgtcatccgccgcaagaagcccggcgccaagctggaggtttacgccttccagccgcggcacaaccacccgctcttcgctacatcctgcatgcccaatcctctgcagcccaatgtcgtgcactggacgacattgctcgatgccgttacgccgcctgatcttctgatggacggggaatgtgaggaatcctacagagtactggaccaatgttgggtagatcttagcaacaaagttgaagaaatcctacagaaacaaacttgtgtcgatgcaactctgacccagactgatgttcagaaccttaaggtttccttaccttctattacaaatggcactcaagcagaaaatatcatggacaaatcaagtggcacaacagcaaaagagtcaaagaagaaggggcagaaaaataagatccaatcaagaaattgcattgaaaaaggtttacgaaagaagcagaaggttcactcagaacaaccttcagagtatgctttgttaggtggttctcaatctggaaacatgtttcaggctttcgagggtcctcctaacatgtccccactgggtacccaaactccgacctataaaacctacagggggattgatctttcaagtccgatgggcccaattagctatgatgaaatgccctctggcttagatccgactttcacgacgcatctaggttttgcaacctatcacacttctcaggtgtcaagtagcagcccacacaaccaggccttgtag
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| Protein seq | MSSPAEPPPPEHPPTPAPAPAPASPPPHPAASGNEAAAPPKPNPPITPAPGRNASAAPPSGSPATAAAAAPVPSRKESGSTSAAAPAAATRKASGVAAATTGVLPRKPPGTTAPVAARNIPATTAASRTATRATTTTTATSVSRRPAAAAAAVASRIPLRATDATTTHAASRNPLTGAAAATATATVAAVGRGGFRAAPTRPEEYTPRMGMEFESEHEAYEFYRYYGWKVGFNVRKEYANKSKKTGEITSRKFACSREGYRANVKRGNHMVPMPDSRTGCNAHLVIRRKKPGAKLEVYAFQPRHNHPLFATSCMPNPLQPNVVHWTTLLDAVTPPDLLMDGECEESYRVLDQCWVDLSNKVEEILQKQTCVDATLTQTDVQNLKVSLPSITNGTQAENIMDKSSGTTAKESKKKGQKNKIQSRNCIEKGLRKKQKVHSEQPSEYALLGGSQSGNMFQAFEGPPNMSPLGTQTPTYKTYRGIDLSSPMGPISYDEMPSGLDPTFTTHLGFATYHTSQVSSSSPHNQAL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0012680 | OsNaBo_04g0012680.02 | Chr04 | 20350152 | 20354354 | - | NAM | ||
| CDS seq | atgagctcgccggcagagccccctccaccggagcacccccctactccagctccagcgccagcgcccgcttccccgcctccacaccccgccgcctcaggcaatgaggccgccgccccaccaaaacctaaccccccaatcacacccgcgcctggccggaatgcctccgccgcgccgccatccggatcgccggctaccgccgccgccgcagcccccgtgccatcccgaaaggaatctgggtctacatccgccgccgcccccgcggcggcgacccggaaggcctcgggggtagccgccgccaccaccggtgtgctacctcggaagccccccgggaccactgcccccgtcgccgccCggaacatcccggcgaccaccgcggcgtcccggaccgccacgagggccaccaccaccactaccgccacctcggtgtcccgaaggcccgccgccgccgccgccgcagtggcctcccgaattcccttgagggcaactgatgccacgacgacccacgcggcatcccgaaatcccttgacgggagccgccgccgccaccgccaccgccaccgttgccgcggtggggaggggcggattccgggccgctcctacacgcccggaggagtacacgccgcggatggggatggagttcgagagcgagcacgaggcgtacgagttctaccgctactacggctggaaagtagggttcaacgtccggaaggagtacgccaacaagagcaagaagaccggcgagatcacctcccggaagttcgcctgctcccgcgagggctacagggccaacgtcaagcggggcaaccacatggtgccgatgccggactcgaggaccggctgcaacgcgcacctcgtcatccgccgcaagaagcccggcgccaagctggaggtttacgccttccagccgcggcacaaccacccgctcttcgctacatcctgcatgcccaatcctctgcagcccaatgtcgtgcactggacgacattgctcgatgccgttacgccgcctgatcttctgatggacggggaatgtgaggaatcctacagagtactggaccaatgttgggtagatcttagcaacaaagttgaagaaatcctacagaaacaaacttgtgtcgatgcaactctgacccagactgatgttcagaaccttaaggtttccttaccttctattacaaatggcactcaagcagaaaatatcatggacaaatcaagtggcacaacagcaaaagagtcaaagaagaaggggcagaaaaataagatccaatcaagaaattgcattgaaaaaggtttacgaaagaagcagaaggttcactcagaacaaccttcagagtatgctttgttaggtggttctcaatctggaaacatgtttcaggctttcgagggtcctcctaacatgtccccactgggtacccaaactccgacctataaaacctacagggggattgatctttcaagtccgatgggcccaattagctatgatgaaatgccctctggcttagatccgactttcacgacgcatctaggttttgcaacctatcacacttctcaggtgtcaagtagcagcccacacaaccaggccttgtag
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| Protein seq | MSSPAEPPPPEHPPTPAPAPAPASPPPHPAASGNEAAAPPKPNPPITPAPGRNASAAPPSGSPATAAAAAPVPSRKESGSTSAAAPAAATRKASGVAAATTGVLPRKPPGTTAPVAARNIPATTAASRTATRATTTTTATSVSRRPAAAAAAVASRIPLRATDATTTHAASRNPLTGAAAATATATVAAVGRGGFRAAPTRPEEYTPRMGMEFESEHEAYEFYRYYGWKVGFNVRKEYANKSKKTGEITSRKFACSREGYRANVKRGNHMVPMPDSRTGCNAHLVIRRKKPGAKLEVYAFQPRHNHPLFATSCMPNPLQPNVVHWTTLLDAVTPPDLLMDGECEESYRVLDQCWVDLSNKVEEILQKQTCVDATLTQTDVQNLKVSLPSITNGTQAENIMDKSSGTTAKESKKKGQKNKIQSRNCIEKGLRKKQKVHSEQPSEYALLGGSQSGNMFQAFEGPPNMSPLGTQTPTYKTYRGIDLSSPMGPISYDEMPSGLDPTFTTHLGFATYHTSQVSSSSPHNQAL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr04 | 20350152 | 20350691 | - | OsNaBo_04g0012680.02 | OsNaBo_04g0012680.01,OsNaBo_04g0012680.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.223960 | 2.762017 | 2.661362 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0421700 | RBH | 1.249095 | 1.179503 | 3.363475 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g52560 | SBH | 0.778995 | 0.987940 | 0.586479 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0421700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013160 | RBH | 0.220918 | 2.940794 | 4.345856 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0013990 | RBH | 0.000000 | 0.507503 | 1.439301 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0013750 | RBH | 0.865129 | 3.283901 | 8.762901 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013350 | RBH | 0.067436 | 0.111466 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0330100 | RBH | 2.271525 | 5.809865 | 6.18242 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0012600 | RBH | 0.045747 | 0.037665 | 0.196578 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0496800 | SBH | 2.2105325 | 4.6714685 | 9.468935 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0012840 | RBH | 0.331260 | 2.776174 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0012850 | RBH | 1.869889 | 11.080102 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0013450 | RBH | 0.293681 | 0.561751 | 0.757658 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0013600 | RBH | 0.055823 | 1.615643 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G012690 | RBH | 0.222143 | 1.860892 | 0.666496 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
