Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0009600 | OGI:10002700 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:17539722-17545714 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagaaacacaaagcatgagttacattaactgctccattaggagtgaaggaaagagctcttttagtaggacaaacatctctggaacaaatgtgagaaatattagagcaatcaaaagctaagcagctgttagtctgagcttgtcttgctgactttgcaaggccatctgcaactttgttgagctctctagagatccaaatgattcgaacttgttgatcctgcagaaaatttttaattcttgaaagaattggtctcagagaccaatgtccggggttttgtatgtagtcctcgttctgcacagcattcactatctcactgttatctgagagaaaaatagggtcttgcagctgaagatgacgagcaatttgcatagctaaaaataatccttcagcttctgctagcaaaggagttcctgcattgagactttgagctttgatgacaatagcattgtgattgctagggttgtggatgaagatccctactcctgttttctcttccgtccaagaggcatccacataaactcttgtccctgcaggaaTtttaacaacagaatttcttatattattctcttcagcccgattgaagtcttggcaactgtcttcttccatttgatgaacactttcatatgtctttgccattgcctgcgcagcattgcacacttgttgtggctcccaaatctTTGttttgaagttgatatcattccttgctttccaaatctgccaaagcataattAaaagattgtatatattgatgccattagctgaaagataggcaataatatcttgaacagagcctagagaagaaagattatcagctttgagattaaagtcagagatgaaccaacataaacgactgaaattacagagaaagaagagatgcaagtcatcctccctttgaccacaggtccgacaattgggactaacggttttgatcctgtggtgcattctttgagcagttgggagagcattactcagcagcctccatccaaaagttttgactctgggaggcatgtacctgtgttttcagattaatttcaaaagattttttgttaaattactgacctgattttgattGgggtacatttcattgtaaattgtcttgtaagcactcttagctgaacaaactcctgagggtgtgtacttccagcaaagcctatcttcctcctctccctgcataatctgaacctgcataattgaatgttgagctgcactataaaaaatttgagttattttctgagcatcccaattcttattctcatcccaaagatcagaaaccttatcaggcatgtgaaaaggaagattatcaagattaagatgatcatgaatgttttttcaaatagagcaccagggttggctccaaatagaaatatcacctttagaaagttgccacactgaagcttcctccaagacatcccttacctgaagaatagaagaccagaaagcagattttggcatatctgttctagccttccaaaaggaagtgtttggAaaatattttgattttaggacagaggatagaagatcatttggattagtaagaattctctaggcagattggacaaggatacttttatttacagccatcaaatctcttatgcccaagcctccctcagaaacaggtttgcaaatgtctttccaagacctaagagccattccTtttttgccaccatctgcttgaattcctgtccaccaaaatttccttataatagcagttagtttagcaatcaaTttttttgagaaaagcatgatggacatgtaataaataggaatggaagcaaagacagatttaatgagggcaagcctacctgcatgagaaagagaattagctttgtaagtagtaagcttgcttttaaacttgtcgacaatgaaactgtaggcagcatttctgtcttttgccctcaccagaagaggatgCcctagatgctttgtgctggagttcataagagaaacaggaaaaattgtaagaatattttgtcttacctcttcaggagtacttttgctgaacaggatggaagatttgccccaatttggagtctggcctgatctgagacaaaaggaattgattatttcagaggttttcctgacttcctcttgttgggcctgccccacaatgattagatcatctgcaaacatcagagaatgaatggaaggatcattttgtcctaactttattcctgaaatgtggttcctttgaattgcatctgcaagctggtcagaaagttcattaatcgcaaggacaaaaagataaggcgataaaggacaaccttgacgaatacctcgatgagctgaaaagtacccgtacgattgaccaTttataacaacagAaaaattagcggagttgatgcaggaaagaacaagacgaacgaaattagcatgaaaccctttacgacaaagagcgtccgctatgaatctccattcaatcctgtcaaaagctttagacaagtctatttttaaaagaaaagcTttttgattaaaagaggtgagattaaaagagtgagcaatttgctgagcaagcacaatattattagagatgcgtctccccttgacaaaagcctgctgagtgtcacaaataaggttaggaagTttattctgaatgtaattagccaaggacttagcaatgaTtttataagaaacattacaaaggctaatgggtctaaaatcagcaggggacttaggattagaatttttaggaacaagaacaatattagtagcattcatacctgattgaagcttacctgtttcatagaaggagcctaccatggcagtaacatcgtcttttatccaattccaggcagctctataaaatgcaacattgagaccatctggccctggggaggcatctcttcgcatttgctttagaatttccaggatgtcattttcagaagggatttcagggggaggaaaaattacatcattgtcattttgatccatagaaggagtggcatcatctgtattggagctttgaaagagattttcaaagtaagaagtgaagacagttgctatctcctcaggatcattaattattgaattattatggataacactagagattctgttctctctccttctcttctgggttgctttttgaaagaaagaagtgtttctgttacctttctggacccaatgcttcttacttctctgtttgtgataatcGgccagcttctgcatggtaatatcatgttgttgcacaatccttttctcctcaaagtacaaatgttctctgtcgggggaactctgaattttcaacagatcttcttccaactgatccaattgctgctgaagaggtttcttcTttttgctccaagaggttaaggatcttgctaacaaggttgttcttctctgaaaatgacagtttacagactgcagccaggctgaatgagcatgctgattaaaatctggttcaagcagccaccaaTtttcaaacatgaaagatcttttaggcctcctgttcttcggattgagaatggcaatgatgggagcatgatcactatacaacatgggcaagtgataaacagtggtatttggataatcaaaacaccattccacatttgcaagacaTCtGtccaacctttccaaaaccagatccttaccctgttgcttattggaccaagtgtaagctggaccattataacccatatccataagccccagattattgacatgatgcttaaaaatattaatacgattctgattaggaggggccaaaccatacttttcattagcatgcatgatctcattaaggtctCccatacaaaaggtaggtatgtgactactatgtacaacaaaagaggagatttcactccacatggcactagtggccctgtgactaggatcaccataaatacaaagaagattgaaaataggaccagagttcttatagactccataagctaagatataattaacactagactgaactatagtaagatccatgtcttcatcccacatcagccacagaccaccagaagcttgatcagcaggaaccacatgactattagctacatgaaaatgatggatcagatcagaagcagtgactttagagctttttgtttctgaaataaagattaccttagcattagtagagtatattaggcgttggaggtgttgcattttcctactgccgaggtgaccccccatacctcggcagttccagcttaaaagactcatggcgcccttgacgccttatgggctggcgccattgcccatccatcattctttccacttccatctccaccgtttccagcactgggatcaacaagctgaatctctgaaacattgcattccctaggatctgtagccagtatcagcctggagctagctccagcatcacttgcaccaCccccttgagtatctccggcagcttgatcaacaaagatatcatgatgcacctccaaagcactccaagtatgcttCctgctatgaaaattgttaatgctttgaggggatcttggagcatctctttgaatgacatcagaatgagcagcagcaagaggtctccaagaagtggaggtcaccattccaccaccataacctcctctctgatcccatcttgtagctctctgcccacctcttctacttggaaccctgattggtgctgaatgatggttagttggagaagcacttcttgattcaatccctccatgttcttcacctcccacaatcgagaaggaagaggcagctgaagtagttggggagcaatggcgtttggtagattcatgggctgcttcatgaaaccCTctcttcttacttaaatgttgtgaggctgtctcatAaatcttggtagctcttgtgcttcttctgtgttgcacttcgttggtgccaatagcagggttaactaaactgttctgatgggcacttgcactgggtgaaactcggtgaaccaatggaacagactggactggttccatctgatgcaccttaccagcagtattgacattctttgagttgcagctgacatgatcctctatagtacttgaaaccagCTTctttttctctgtacttccatgtaccaaCatctcttcggtaccaacttctGgtatactttgtatatcaggttctttgtcTtttttctcacattgtttgcctgctgtggtagtgtgaacagcttgacttgggggcccttgaacagtgctgcagccagctaaagtcaaagctttctcactcgcTtttttccaatctagcttgggcattaatgactggctggtcccacttcctctctcttgctgcttctgctgttcttgaatgttcttgaattgaggagaagaaaaatgttgcctgaaTttttccacaattgaatttttgttggattcctccatatccaaaaatgcctctgatggcatataatcgatctgagtgatccactttcccagtttatccttaagatcttcctcgaatgcatctggaaattgaatgataattctttgtctttgaggacagacctgaacaTtatggaagaggagaccacaaaaagtacatattctgggagttctttcataatgcagaaaagctttaagttcagatttatcaggaagctccaagataacatgatcaggaacTggTttttccacatcaatcctgattctaacacaaacaaatttctgattcctcagcaaactatctggatctattggttcagcttttgagatttgacctatgttttcagcagccaacttgacattcttaacaTttctaagacttgggggaatgccatagatacgcacattaaccataagatgcttgaaagtgtaagctgacataggtttaattttctcatccaaagaaacccattcAagcagaaaaacatcactgCcaaaagaccacggttgcttttgccaaacccaggacagatcttcataattacgaaaatgagccataaagagattgctttctacctgagagatgtcaagataaactctttgccaagcttttgccattgatttcttcaaagcctccaaagggatctgcctctgctggcctccagaatgtccaaccttcat
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| CDS seq | atgaaggttggacattctggaggccagcagaggcagatccctttggaggctttgaagaaatcaatggcaaaagcttggcaaagagtttatcttgacatctctcaggtagaaagcaatctctttatggctcattttcgtaattatgaagatctgtcctgggtttggcaaaagcaaccgtggtcttttgGcagtgatgtttttctgctTgaatgggtttctttggatgagaaaattaaacctatgtcagcttacactttcaagcatcttatggttaatgtgcgtatctatggcattcccccaagtcttagaaAtgttaagaatgtcaagttggctgctgaaaacataggtcaaatctcaaaagctgaaccaatagatccagatagtttgctgaggaatcagaaatttgtttgtgttagaatcaggattgatgtggaaaaAccAgttcctgatcatgttatcttggagcttcctgataaatctgaacttaaagcttttctgcattatgaaagaactcccagaatatgtactttttgtggtctcctcttccataAtgttcaggtctgtcctcaaagacaaagaattatcattcaatttccagatgcattcgaggaagatcttaaggataaactgggaaagtggatcactcagatcgattatatgccatcagaggcatttttggatatggaggaatccaacaaaaattcaattgtggaaaaAttcaggcaacatttttcttctcctcaattcaagaacattcaagaacagcagaagcagcaagagagaggaagtgggaccagccagtcattaatgcccaagctagattggaaaaaAgcgagtgagaaagctttgactttagctggctgcagcactgttcaagggcccccaagtcaagctgttcacactaccacagcaggcaaacaatgtgagaaaaaAgacaaagaacctgatatacaaagtatacCagaagttggtaccgaagagatGttggtacatggaagtacagagaaaaagAAGctggtttcaagtactatagaggatcatgtcagctgcaactcaaagaatgtcaatactgctggtaaggtgcatcagatggaaccagtccagtctgttccattggttcaccgagtttcacccagtgcaagtgcccatcagaacagtttagttaaccctgctattggcaccaacgaagtgcaacacagaagaagcacaagagctaccaagattTatgagacagcctcacaacatttaagtaagaagagAGggtttcatgaagcagcccatgaatctaccaaacgccattgctccccaactacttcagctgcctcttccttctcgattgtgggaggtgaagaacatggagggattgaatcaagaagtgcttctccaactaaccatcattcagcaccaatcagggttccaagtagaagaggtgggcagagagctacaagatgggatcagagaggaggttatggtggtggaatggtgacctccacttcttggagacctcttgctgctgctcattctgatgtcattcaaagagatgctccaagatcccctcaaagcattaacaattttcatagcagGaagcatacttggagtgctttggaggtgcatcatgatatctttgttgatcaagctgccggagatactcaaggggGtggtgcaagtgatgctggagctagctccaggctgatactggctacagatcctagggaatgcaatgtttcagagattcagcttggagaggaggaagataggctttgctggaagtacacaccctcaggagtttgttcagctaagagtgcttacaagacaatttacaatgaaatgtacccCaatcaaaatcaggtacatgcctcccagagtcaaaacttttggatggaggctgctgagtaa
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| Protein seq | MKVGHSGGQQRQIPLEALKKSMAKAWQRVYLDISQVESNLFMAHFRNYEDLSWVWQKQPWSFGSDVFLLEWVSLDEKIKPMSAYTFKHLMVNVRIYGIPPSLRNVKNVKLAAENIGQISKAEPIDPDSLLRNQKFVCVRIRIDVEKPVPDHVILELPDKSELKAFLHYERTPRICTFCGLLFHNVQVCPQRQRIIIQFPDAFEEDLKDKLGKWITQIDYMPSEAFLDMEESNKNSIVEKFRQHFSSPQFKNIQEQQKQQERGSGTSQSLMPKLDWKKASEKALTLAGCSTVQGPPSQAVHTTTAGKQCEKKDKEPDIQSIPEVGTEEMLVHGSTEKKKLVSSTIEDHVSCNSKNVNTAGKVHQMEPVQSVPLVHRVSPSASAHQNSLVNPAIGTNEVQHRRSTRATKIYETASQHLSKKRGFHEAAHESTKRHCSPTTSAASSFSIVGGEEHGGIESRSASPTNHHSAPIRVPSRRGGQRATRWDQRGGYGGGMVTSTSWRPLAAAHSDVIQRDAPRSPQSINNFHSRKHTWSALEVHHDIFVDQAAGDTQGGGASDAGASSRLILATDPRECNVSEIQLGEEEDRLCWKYTPSGVCSAKSAYKTIYNEMYPNQNQVHASQSQNFWMEAAE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0009600 | OsNaBo_04g0009600.02 | Chr04 | 17539722 | 17540686 | - | NAM | ||
| CDS seq | atgctctcccaactgctcaaagaatgcaccacaggatcaaaaccgttagtcccaattgtcggacctgtggtcaaagggaggatgacttgcatctcttctttctctgtaatttcagtcgtttatgttgggacaagagtttatgtggatgcctcttggacggaagagaaaacaggagtagggatcttcatccacaaccctagcaatcacaatgctattgtcatcaaagctcaaagtctcaatgcaggaactcctttgctagcagaagctgaaggattatttttagctatgcaaattgctcgtcatcttcagctgcaagaccctatttttctctcagataacagtgagatagtgaatgctgtgcagaacgaggactacatacaaaaccccggacattggtctctgagaccaattctttcaagaattaaaaattttctgcaggatcaacaagttcgaatcatttggatctctagagagctcaacaaagttgcagatggccttgcaaagtcagcaagacaagctcagactaacagctgcttagcttttgattgctctaatatttctcacatttgttccagagatgtttgtcctactaaaagagctctttccttcactcctaatggagcagttaatgtaactcatgctttgtgtttctaa
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| Protein seq | MLSQLLKECTTGSKPLVPIVGPVVKGRMTCISSFSVISVVYVGTRVYVDASWTEEKTGVGIFIHNPSNHNAIVIKAQSLNAGTPLLAEAEGLFLAMQIARHLQLQDPIFLSDNSEIVNAVQNEDYIQNPGHWSLRPILSRIKNFLQDQQVRIIWISRELNKVADGLAKSARQAQTNSCLAFDCSNISHICSRDVCPTKRALSFTPNGAVNVTHALCF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0009600 | OsNaBo_04g0009600.01 | Chr04 | 17540686 | 17545714 | - | NAM | ||
| CDS seq | atgaaggttggacattctggaggccagcagaggcagatccctttggaggctttgaagaaatcaatggcaaaagcttggcaaagagtttatcttgacatctctcaggtagaaagcaatctctttatggctcattttcgtaattatgaagatctgtcctgggtttggcaaaagcaaccgtggtcttttgGcagtgatgtttttctgctTgaatgggtttctttggatgagaaaattaaacctatgtcagcttacactttcaagcatcttatggttaatgtgcgtatctatggcattcccccaagtcttagaaAtgttaagaatgtcaagttggctgctgaaaacataggtcaaatctcaaaagctgaaccaatagatccagatagtttgctgaggaatcagaaatttgtttgtgttagaatcaggattgatgtggaaaaAccAgttcctgatcatgttatcttggagcttcctgataaatctgaacttaaagcttttctgcattatgaaagaactcccagaatatgtactttttgtggtctcctcttccataAtgttcaggtctgtcctcaaagacaaagaattatcattcaatttccagatgcattcgaggaagatcttaaggataaactgggaaagtggatcactcagatcgattatatgccatcagaggcatttttggatatggaggaatccaacaaaaattcaattgtggaaaaAttcaggcaacatttttcttctcctcaattcaagaacattcaagaacagcagaagcagcaagagagaggaagtgggaccagccagtcattaatgcccaagctagattggaaaaaAgcgagtgagaaagctttgactttagctggctgcagcactgttcaagggcccccaagtcaagctgttcacactaccacagcaggcaaacaatgtgagaaaaaAgacaaagaacctgatatacaaagtatacCagaagttggtaccgaagagatGttggtacatggaagtacagagaaaaagAAGctggtttcaagtactatagaggatcatgtcagctgcaactcaaagaatgtcaatactgctggtaaggtgcatcagatggaaccagtccagtctgttccattggttcaccgagtttcacccagtgcaagtgcccatcagaacagtttagttaaccctgctattggcaccaacgaagtgcaacacagaagaagcacaagagctaccaagattTatgagacagcctcacaacatttaagtaagaagagAGggtttcatgaagcagcccatgaatctaccaaacgccattgctccccaactacttcagctgcctcttccttctcgattgtgggaggtgaagaacatggagggattgaatcaagaagtgcttctccaactaaccatcattcagcaccaatcagggttccaagtagaagaggtgggcagagagctacaagatgggatcagagaggaggttatggtggtggaatggtgacctccacttcttggagacctcttgctgctgctcattctgatgtcattcaaagagatgctccaagatcccctcaaagcattaacaattttcatagcagGaagcatacttggagtgctttggaggtgcatcatgatatctttgttgatcaagctgccggagatactcaaggggGtggtgcaagtgatgctggagctagctccaggctgatactggctacagatcctagggaatgcaatgtttcagagattcagcttggagaggaggaagataggctttgctggaagtacacaccctcaggagtttgttcagctaagagtgcttacaagacaatttacaatgaaatgtacccCaatcaaaatcaggtacatgcctcccagagtcaaaacttttggatggaggctgctgagtaa
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| Protein seq | MKVGHSGGQQRQIPLEALKKSMAKAWQRVYLDISQVESNLFMAHFRNYEDLSWVWQKQPWSFGSDVFLLEWVSLDEKIKPMSAYTFKHLMVNVRIYGIPPSLRNVKNVKLAAENIGQISKAEPIDPDSLLRNQKFVCVRIRIDVEKPVPDHVILELPDKSELKAFLHYERTPRICTFCGLLFHNVQVCPQRQRIIIQFPDAFEEDLKDKLGKWITQIDYMPSEAFLDMEESNKNSIVEKFRQHFSSPQFKNIQEQQKQQERGSGTSQSLMPKLDWKKASEKALTLAGCSTVQGPPSQAVHTTTAGKQCEKKDKEPDIQSIPEVGTEEMLVHGSTEKKKLVSSTIEDHVSCNSKNVNTAGKVHQMEPVQSVPLVHRVSPSASAHQNSLVNPAIGTNEVQHRRSTRATKIYETASQHLSKKRGFHEAAHESTKRHCSPTTSAASSFSIVGGEEHGGIESRSASPTNHHSAPIRVPSRRGGQRATRWDQRGGYGGGMVTSTSWRPLAAAHSDVIQRDAPRSPQSINNFHSRKHTWSALEVHHDIFVDQAAGDTQGGGASDAGASSRLILATDPRECNVSEIQLGEEEDRLCWKYTPSGVCSAKSAYKTIYNEMYPNQNQVHASQSQNFWMEAAE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.084946 | 5.989265 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g30310 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0010110 | RBH | 0.0 | 0.0 | 1.977255 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0010880 | SBH | 0.0 | 0.0 | 0.204246 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0007470 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0010270 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0010510 | RBH | 0.0 | 0.0 | 5.095877 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0284900 | RBH | 0.0926785 | 0 | 0.041635 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0005840 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G009580 | RBH | 0.0 | 1.588812 | 2.123213 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
