Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0005580 | OGI:04033110 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:9957647-9962938 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggaccaatcgacatcgaaaaacaagaattcctccaatctacaagaCccccaaaatgtgggaataaaccagcccatgctactcattgaagatcctccccaagcttccaggaacaaaggtagagtccaagcctcactaaagcctgaagactacaccatcaatctaaatcacctaaatcaataccttgcgaatgaaaggtgccacctgacttcagcaaaacgaaggataaatgccacgtgttatagatgtggcgaggaaggacattgtgccttggattgccctaagAaaaagctaggaaatggacaagtaaggactataccccgacacccaaaaaggaaaatgagggcaggaataccaccaaaaccgatgccacattcactctatccaaaacctatgtatcagcaatttcgtagacaaggaactacaccacattggtggaaaggaaaacgggaaagaaaagcgtcatcactaataacatatgctgaacttgatatcagtaaaatgggaatagaaatcggtgatttgcctgaagaagttgaagagctacaactatggcaacgaaagAgagatggatgttgtttttcttgtggacaatttggacattatgcgataggctgtactcaagacaccaatgaagaacaagaaacactgccttcacagatcagcccggaagaggatagagttccagacccatccaaagaagtttcgaagattaaggcatgtagtcgttgcggagagataggacactacggtagtaattgcgttactcaatgcccctactgtgacgaaaaccatcaaaacggagaatgccccacaacgaagatcacgtgcttcctctgcgaaaagatggaccatgtgccacaagactgtcaactaagtccgttgctgaccaagacggcggaagtacaaagagtgtcgcttcgcttcgcccatcaactcatgacgtccggaagccgctaagaccctggagttccaaccttcgattagcatgttttgttgtcgaataatattttagtcgaactagtttaatgtcaccatagtcccaccgaatctcggggacgagatttctttaaggggggtagatttgtaacatcctgaaaattcccgacaataaaaatcactaaaatttcgaacTttttttaaacttttgcatcatgctggatgttatggttgttattgcttgccaaaccgtaaatcgacacaatggatcaatttaaagatttacaCccgagcaataattacgatttacaacgatgcgatatttattatcaaacccataaatatttatgcacatgaaagccaagccaaataaagtacaagttaattaTTaaaccctgtagtataaatcaccaatcgaatattgaataatcaaaccatgttgatagcctgaattcatatttaacaaaagggagcaacatggttgaatatagtccacttgaatccaatctcacatgaaatatagatagacatgaaatgatgaccaattataatggaactctatctatAacatagttcactaggagtaattaatgggatattactaaaccataatgctctatatAaaggtaaaccaattcacatgaaataatggtcatatgattaaattaagctttataaataattaatctattgtccaaattaTCtttctctaattaagacatattacattgtttttagcctttagatgattaatctacggtccaaactatctctctaattttCttcttccataaagtcataccttactttttacgtttgaatcaccattctacatgctatttaaatttaaattatcataaaccacattaacttacttaatctgatgttatctagctatcttacacgttaTttttttattgttattatactaaattcccatagcaatgcgcgggatttcacctacttcctccgtttcagaatgtaaaactttttagcattgctcatattcaTataaatgataatgaaaatatatatatataTATATATatatatgtatctaaattcattaacatttattaatatatataatgctagaaaatcttagggagtatagtaagtaaaaggacaaaaggccaatatcattttctcatatttcttaggtatcctcaaggatttaaatagccggctatagctgccgctatagccggagatagctgctggaaaaggaagcagctgagaaataccacatttgccgctacatgacatgagacgctaatagccggtgttagcgggagatagccgctatttgatccttcatttagcggcagctatgctgtagttttgggccgaaattagctacggtccaaggcccatctatttgtcatgaactaaccctagctcatctctctctttcctcaCTccctcacctcggcttttcctctgcacttctacaggcgacggcggcggctctgacttgctgcggcagctgcggctgagcccggaggcggcagcggcggcggctgccggctgcgcccggagacggcagcggcggctgcggctgcgcgtgacggcggctgcagctgcggcctcgcttggaggaggcggcggcggtggcggcggcagctgcgaccggaggctgcaacggcggaagttgctcccggaggctacggcggcggcagcccaTttctcctctcccccaagtgtccctgttcctgatctcccccaagcaccatgtcccagccagatacaagtaagcttcgttttatgtttgtaatacctgctagccactgatgattgatgaactgttatcatgtccctgtgatgaaatggtgatggcaagagaattcagtacaattatcatgtgatgaactatttattttgttgctgtgatgacctactttatccttagttttttgcaaaacagctaaatggcttagctgcagctatagcccgctatagctgatgttagctgttgaaagctcaagcagctaaggcccttagccggctatttaaatccctgggtatcctgcgtaagcgcaattgtgcaaatcatcggaaatcatcgtgcgggggtgctgcgggcggttgcgtcgagccgcgatatttccccccctccgctcgccctcgactccgactccgactcctcgcgagttcgcccgccgccgccgatcccccatccatcccgcgaccgagcagggttgcctccgccgcgtcccggtgagcatcgcacgtcctctttttttttttgttcttcttttttgggctcgaattcgtgttaaccctagcttgcgttctagagaaatttgggttcgactgaaccccctaCGcccccatgttagatccgccatggcttgccatgcccgccgcccccatgagagggaggtccgcctctgatgagcttagggttcaccgggtgccacacccgttagggccctctctgccccccgtgtggttctagagcttatttactgtcatcgatgattgcgggaatgcctgagttagagagggttttccattcccgttctgtcaGTgtggtcgccttggggctaactagtttagcggtgtagaggggatgtaaaaggtccgtagtgagaggcgcatcggaacgctgtttagctgttttgatgaaacgtgttttgggtatggggggtctgatcgttggcgctctacccgtctttgtggaatatgggggcctgaaacttttagttagtttcttcggtcgggagaatgagctgttcaactgtacctgatgggcgctatttaaatgactcggagtcatgctagcatcacatagtcctttTCtttttacataattttgtaaaagaagaatgtttacacggggtatctgccacattggtttttgttttgctttcactgtagttgaagtcaagatggctgtcacattatatatgacagttggctttttcaatgattaatgtgaatttgggctaatatgggattgtatcggattgaatcatgaatagcttattctggacaagagctccaaatattggtttgtctgttcggaaatactgcctatcttggtgattttgcttcgttaggtgacaaatagaagggcatttcttgaatgagaaactactcatatgattgatttggcatgttgctaatctagatactttacaaagatatttttaatcaaaactaggagagcttgaatatactcgtctcactgtgctatttgttttggtgctgaagggtttattacaaaaaccatatacgcatcgtaatgagccttaacctaaaatatcttccaccgttactctaaatatgatgcttggtttcatgaacttgcctttttttctttctcataattaaattactagttcaagtgagctttgtatactagagacttactgtgttctttcagcggtagtaatttgaaagagaaaactgcactgtgttgatgttacttttgccatttatcattctatattagtatattacaaagacatttagccctttttactctcttatggttggctttattttctgttgctcattattattttactgccttatgtactgacaaatagggggggttgacctacattgtttggccaagacagcgagtaaaatctagatgtaaagtttgctgtgggcttgggaaacttgaagatgatcaaagaatcttcatctcctgcattggatgctgataaaatagaagttccttaaccaaaggacgaaaacaattcctcaaattctgaagctgctacagataatgaagactttgaaattagtgatgatgatgacgatgatcgtaaccacaagcaccggaagcgggaggcgagacctcaatcttttgatgagaatactgagcaatctccagggggtcctctgaaaaaaagacacaaattttctggtggagctgattcacatggggaagcacagaaagatttctttccgaaattcaagaggcgccctggagcaggggctcatagtcgggcacctcgagttaatccatcctttcgtgattcatcagcttctgtggctgctcgcgctcctatgacacgtggaagaggaaggaatggtgcaccctgggctcagcatgaaccaagatttaacacacttgagatgactttgcatcacagatggcctctcaaggaccaccaactcatcctagcttatttatgggtcctgcattgccaagtggtggtagtgcacaaaatggttcttggggtccatatggatttgcctggaatgcctaatggaatgctggatccaattcatccacttggaatgcaaggccctattcagcctgcaatatctcctttaattgatcttggcatgcctcgtcaacgtgtagagactttgaggagcgtggattttgcttga
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| CDS seq | atggaccaatcgacatcgaaaaacaagaattcctccaatctacaagaCccccaaaatgtgggaataaaccagcccatgctactcattgaagatcctccccaagcttccaggaacaaaggcgacggcggcggctctgacttgctgcggcagctgcggctgagcccggaggcggcagcggcggcggctgccggctgcgcccggagacggcagcggcggctgcggctgcgcgtgacggcggctgcagctgcggcctcgcttggaggaggcggcggcggtggcggcggcagctgcgaccggaggctgcaacggcggaagttgctcccggaggctacggcggcggcagcccaTttctcctctcccccaagtgtccctgttcctgatctcccccaagcaccatgtcccagccagatacaagacgaaaacaattcctcaaattctgaagctgctacagataatgaagactttgaaattagtgatgatgatgacgatgatcgtaaccacaagcaccggaagcgggaggcgagacctcaatcttttgatgagaatactgagcaatctccagggggtcctctgaaaaaaagacacaaattttctggtggagctgattcacatggggaagcacagaaagatttctttccgaaattcaagaggcgccctggagcaggggctcatagtcgggcacctcgagttaatccatcctttcgtgattcatcagcttctgtggctgctcgcgctcctatgacacgtggaagaggaaggaatggtgcaccctgggctcagcatgaaccaagatttaacacacttgagatgactttgcatcacagatggcctctcaaggaccaccaactcatcctagcttatttatgggtcctgcattgccaagtggtggtagtgcacaaaatggttcttggggtccatatggatttgcctggaatgcctaatggaatgctggatccaattcatccacttggaatgcaaggccctattcagcctgcaatatctcctttaattgatcttggcatgcctcgtcaacgtgtagagactttgaggagcgtggattttgcttga
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| Protein seq | MDQSTSKNKNSSNLQDPQNVGINQPMLLIEDPPQASRNKGDGGGSDLLRQLRLSPEAAAAAAAGCARRRQRRLRLRVTAAAAAASLGGGGGGGGGSCDRRLQRRKLLPEATAAAAHFSSPPSVPVPDLPQAPCPSQIQDENNSSNSEAATDNEDFEISDDDDDDRNHKHRKREARPQSFDENTEQSPGGPLKKRHKFSGGADSHGEAQKDFFPKFKRRPGAGAHSRAPRVNPSFRDSSASVAARAPMTRGRGRNGAPWAQHEPRFNTLEMTLHHRWPLKDHQLILAYLWVLHCQVVVVHKMVLGVHMDLPGMPNGMLDPIHPLGMQGPIQPAISPLIDLGMPRQRVETLRSVDFA |
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| Function | Zinc finger CCCH domain-containing protein 27 [UniProtKB/Swiss-Prot:Q0JDM0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0005580 | OsNaBo_04g0005580.01 | Chr04 | 9957647 | 9962938 | + | NAM | ||
| CDS seq | atggaccaatcgacatcgaaaaacaagaattcctccaatctacaagaCccccaaaatgtgggaataaaccagcccatgctactcattgaagatcctccccaagcttccaggaacaaaggcgacggcggcggctctgacttgctgcggcagctgcggctgagcccggaggcggcagcggcggcggctgccggctgcgcccggagacggcagcggcggctgcggctgcgcgtgacggcggctgcagctgcggcctcgcttggaggaggcggcggcggtggcggcggcagctgcgaccggaggctgcaacggcggaagttgctcccggaggctacggcggcggcagcccaTttctcctctcccccaagtgtccctgttcctgatctcccccaagcaccatgtcccagccagatacaagacgaaaacaattcctcaaattctgaagctgctacagataatgaagactttgaaattagtgatgatgatgacgatgatcgtaaccacaagcaccggaagcgggaggcgagacctcaatcttttgatgagaatactgagcaatctccagggggtcctctgaaaaaaagacacaaattttctggtggagctgattcacatggggaagcacagaaagatttctttccgaaattcaagaggcgccctggagcaggggctcatagtcgggcacctcgagttaatccatcctttcgtgattcatcagcttctgtggctgctcgcgctcctatgacacgtggaagaggaaggaatggtgcaccctgggctcagcatgaaccaagatttaacacacttgagatgactttgcatcacagatggcctctcaaggaccaccaactcatcctagcttatttatgggtcctgcattgccaagtggtggtagtgcacaaaatggttcttggggtccatatggatttgcctggaatgcctaatggaatgctggatccaattcatccacttggaatgcaaggccctattcagcctgcaatatctcctttaattgatcttggcatgcctcgtcaacgtgtagagactttgaggagcgtggattttgcttga
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| Protein seq | MDQSTSKNKNSSNLQDPQNVGINQPMLLIEDPPQASRNKGDGGGSDLLRQLRLSPEAAAAAAAGCARRRQRRLRLRVTAAAAAASLGGGGGGGGGSCDRRLQRRKLLPEATAAAAHFSSPPSVPVPDLPQAPCPSQIQDENNSSNSEAATDNEDFEISDDDDDDRNHKHRKREARPQSFDENTEQSPGGPLKKRHKFSGGADSHGEAQKDFFPKFKRRPGAGAHSRAPRVNPSFRDSSASVAARAPMTRGRGRNGAPWAQHEPRFNTLEMTLHHRWPLKDHQLILAYLWVLHCQVVVVHKMVLGVHMDLPGMPNGMLDPIHPLGMQGPIQPAISPLIDLGMPRQRVETLRSVDFA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.005951 | 4.210209 | 1.904450 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0005620 | SBH | 1.252924 | 4.057422 | 1.460893 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0156000 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0005570 | SBH | 0.018459 | 0.080097 | 0.049994 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0167000 | RBH | 1.683638 | 0 | 8.696419 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0005520 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0005470 | SBH | 0.000000 | 16.716343 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0005330 | SBH | 0.087753 | 0.283139 | 0.019043 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0005671 | RBH | 0.150381 | 0.208859 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0005460 | SBH | 2.225481 | 20.759108 | 8.465190 |
