Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0001800 | OGI:04008030 | 12/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:2441122-2443972 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acagcagagattaaggagatataacaagtacataattatcatcatctttttcttctgcttgttctgcttcttcggctacactaagttctttatcgatgtagaacttgccagcttgttctgccataagccagacgacggttgtcagctcgccgccttcaccaatcctcttggcgtgtgactccctgctacaccggtggctgacgtagaggagcatctccacccacatctcaaacaaaaattgcaccaagtcgtcatcccttttcttttccgggatagacgtcggcttgccattcagggtcgtggattcgtgtgcaaacttttcgttgaggtcggcaagcatgagtgctagcttggttgcataccgcagggcattaccgcgaagggctagcttcccatcctgctgcaacactgggttgtccctcttcttcgtggccagaatttctgcaagtttgttagcatcgccattgacgccgggggcaagctccttcgacagtgccctgcaagtttgtctgtacagcttgccaagggcgaggcctggtaccattgatgggcgttccaccatgaggaatatcatgtagttggatagaagcttaattgcttccacacgctggtcggtctgatgatcagagtcatgttgttgtttcatggccgccggctcgtcggactcagatgtgcggaggaagacgtctgtagcgatgtgccagatgaggatgccctcctggatctcgtcgcggaggtaccgtttgagatcacccaaaccttccttcttggccatcagattacgcagtgcgagctggcccctttctgccttgattaaaccaaccgagtctgtggccgcaccctcttgctttgttagttctgctgaaggtttgctcacttcgggtgtttggcggcgaacaccacgtcgcaacttcggagtaaactctacagtgacatactcattcttcatctggtccgaagacttattaccagacctaatctcttcctcatggtccgaagaattatcactcaagtcgtacccaatcccgtccacgttgtccaaagacttatgactcgtgtccttcctaccagacccaaaggtttcatcgctcgaaaaattcatcatgtccttctcaccagagccaatcccttcctcatggtccgaacaattatcactcaggtcagacccaatcccctccacgtggttcgaagaattattacttaggtgcttattaccagatccaatcccttccccatggcccgaagaattatcattcagatcagactcattcctctcaacatggtccgaagacttattagtcaggtccttattacttgtcccaatccacttcacatggtgtgaagaatgatcacccaggtcagatccaatcccttccatgtgatccgagggattgttagtcagatctttcttagccaacccaatcccctccttactcatatccttattaccagtcccactattcccctccatattagtcctcaaaatcactcttgtcagctcctcaaagaccaatttcatgacaccttcaggaatctcttctgttgtggtggtatagttcctcttctcactagttgcagtacaaaactgcagtacgttgtactgcccaatcgcaccggaccacctccttctgccatgcacattgacgagctcgcggaggtactccagcccgaggtgaagccgacgccacatcccactgtgcacggctgcgcggtacagccacccatgtcgtcgtctcggcatgccaaggaccaggtaggcgtacgcccagcctgatccggccgccgacagcagcgacaccatgtctagcaggatggcacccaccaacaacgcgtaggtgatggcgacgtcaacaagcaccggaggagaattcatggcagcgatggaggtggcgcccacgctacttgtgctgctgcgactgagatgaaagagcagcaaggcggcggcggtggcaagcggcgagaagacacggaggcagtagccgtaccaggtgtggatgacaccagccttggtgtacatgatgtcgtacagcagagacacctccatctggaacaccgtccatctcttctcccactcccatacatcagaaaatattgtcctgcgtagataagatatattctttgccttcgccgatgaggagtccaccaaggcgctcttgcatacctcaaactgggagtgagcataaagcaggagatcttcgggagctggacgatctctaataatgacgggcacttcaggaggctcctcttgtttctcgtcgtcgctgttgtcgtcgttctccaaagcgctccggatgttgctcatgtttgcgttgtagagcgcccatatcctctccgcgtacttggcaacgccgatggcgaatatcacccacgccgccgggagcagaagaccgctgccggcggggaatgttttgtagaggacgtatgcagcgccgaggacctgcgtgaagaagtccttctggagaattcgcttccagagctggttgtcctcgagggagtaggcggtgatggagtccgggccaccgaggtgcagcagcaggaacggcgcccagaacgccaccagctgctgccgctccggcggccgtgagttcaccgagaggtggccgaggccgtacgtggcggcggagtcggccagcaggtacgagatccacacgatcgacttcaccacagctgagttgctgcgccgccggtagccggccaagaacagggcggctacctgcaggaggaagctggaaaccacgatgaattcgatctcccacgcattcacgaactgcaccgccacattgtcgttgtactttaccggggatccaactccaactgcaaccatccggcggtaatgagccggagcagccat
More
|
||||||||||
| CDS seq | atggctgctccggctcattaccgccggatggttgcagttggagttggatccccggtaaagtacaacgacaatgtggcggtgcagttcgtgaatgcgtgggagatcgaattcatcgtggtttccagcttcctcctgcagtttgaggtatgcaagagcgccttggtggactcctcatcggcgaaggcaaagaatatatcttatctacgcaggacaatattttctgatgtatgggagtgggagaagagatggacggtgttccagatggaggtgtctctgctgtacgacatcatgtacaccaaggctggtgtcatccacacctggtacggctactgcctccgtgtcttctcgccgcttgccaccgccgccgccttgctgctctttcatctcagtcgcagcagcacaagtagcgtgggcgccacctccatcgctgccatgaattctcctccggtgcttgttgacgtcgccatcacctacgcgttgttggtgggtgccatcctgctagacatggtgtcgctgctgtcggcggccggatcaggctgggcgtacgcctacctggtccttggcatgccgagacgacgacatgggtggctgtaccgcgcagccgtgcacagtgggatgtggcgtcggcttcacctcgggctggagtacctccgcgagctcgtcaatgtgcatggcagaaggaggtggtccggtgcgattgggcagtacaacgtactgcagttttgtactgcaactagtgagaagaggaactataccaccacaacagaagagattcctgaaggtgtcatgaaattggtctttgaggagctgacaagagtgattttgaggactaatatggaggggaatagtgggactggtaataaggatatgagtaaggaggggattgggttggctaagaaagatctgactaacaatccctcggatcacatggaagggattggatctgacctgggtgatcattcttcacaccatgtgaagtggattgggacaagtaataaggacctgactaataagtcttcggaccatgttgagaggaatgagtctgatctgaatgataattcttcgggccatggggaagggattggatctggtaataagcacctaagtaataattcttcgaaccacgtggaggggattgggtctgacctgagtgataattgttcggaccatgaggaagggattggctctggtgagaaggacatgatgaatttttcgagcgatgaaacctttgggtctggtaggaaggacacgagtcataagtctttggacaacgtggacgggattgggtacgacttgagtgataattcttcggaccatgaggaagagattaggtctggtaataagtcttcggaccagatgaagaatgagtatgtcactgtagagtttactccgaagttgcgacgtggtgttcgccgccaaacacccgaagtgagcaaaccttcagcagaactaacaaagcaagagggtgcggccacagactcggttggtttaatcaaggcagaaaggggccagctcgcactgcgtaatctgatggccaagaaggaaggtttgggtgatctcaaacggtacctccgcgacgagatccaggagggcatcctcatctggcacatcgctacagacgtcttcctccgcacatctgagtccgacgagccggcggccatgaaacaacaacatgactctgatcatcagaccgaccagcgtgtggaagcaattaagcttctatccaactacatgatattcctcatggtggaacgcccatcaatggtaccaggcctcgcccttggcaagctgtacagacaaacttgcagggcactgtcgaaggagcttgcccccggcgtcaatggcgatgctaacaaacttgcagaaattctggccacgaagaagagggacaacccagtgttgcagcaggatgggaagctagcccttcgcggtaatgccctgcggtatgcaaccaagctagcactcatgcttgccgacctcaacgaaaagtttgcacacgaatccacgaccctgaatggcaagccgacgtctatcccggaaaagaaaagggatgacgacttggtgcaatttttgtttgagatgtgggtggagatgctcctctacgtcagccaccggtgtagcagggagtcacacgccaagaggattggtgaaggcggcgagctgacaaccgtcgtctggcttatggcagaacaagctggcaagttctacatcgataaagaacttagtgtagccgaagaagcagaacaagcagaagaaaaagatgatgataattatgtacttgttatatctccttaa
More
|
||||||||||
| Protein seq | MAAPAHYRRMVAVGVGSPVKYNDNVAVQFVNAWEIEFIVVSSFLLQFEVCKSALVDSSSAKAKNISYLRRTIFSDVWEWEKRWTVFQMEVSLLYDIMYTKAGVIHTWYGYCLRVFSPLATAAALLLFHLSRSSTSSVGATSIAAMNSPPVLVDVAITYALLVGAILLDMVSLLSAAGSGWAYAYLVLGMPRRRHGWLYRAAVHSGMWRRLHLGLEYLRELVNVHGRRRWSGAIGQYNVLQFCTATSEKRNYTTTTEEIPEGVMKLVFEELTRVILRTNMEGNSGTGNKDMSKEGIGLAKKDLTNNPSDHMEGIGSDLGDHSSHHVKWIGTSNKDLTNKSSDHVERNESDLNDNSSGHGEGIGSGNKHLSNNSSNHVEGIGSDLSDNCSDHEEGIGSGEKDMMNFSSDETFGSGRKDTSHKSLDNVDGIGYDLSDNSSDHEEEIRSGNKSSDQMKNEYVTVEFTPKLRRGVRRQTPEVSKPSAELTKQEGAATDSVGLIKAERGQLALRNLMAKKEGLGDLKRYLRDEIQEGILIWHIATDVFLRTSESDEPAAMKQQHDSDHQTDQRVEAIKLLSNYMIFLMVERPSMVPGLALGKLYRQTCRALSKELAPGVNGDANKLAEILATKKRDNPVLQQDGKLALRGNALRYATKLALMLADLNEKFAHESTTLNGKPTSIPEKKRDDDLVQFLFEMWVEMLLYVSHRCSRESHAKRIGEGGELTTVVWLMAEQAGKFYIDKELSVAEEAEQAEEKDDDNYVLVISP |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0001800 | OsNaBo_04g0001800.01 | Chr04 | 2441122 | 2443972 | - | NAM | ||
| CDS seq | atggctgctccggctcattaccgccggatggttgcagttggagttggatccccggtaaagtacaacgacaatgtggcggtgcagttcgtgaatgcgtgggagatcgaattcatcgtggtttccagcttcctcctgcagtttgaggtatgcaagagcgccttggtggactcctcatcggcgaaggcaaagaatatatcttatctacgcaggacaatattttctgatgtatgggagtgggagaagagatggacggtgttccagatggaggtgtctctgctgtacgacatcatgtacaccaaggctggtgtcatccacacctggtacggctactgcctccgtgtcttctcgccgcttgccaccgccgccgccttgctgctctttcatctcagtcgcagcagcacaagtagcgtgggcgccacctccatcgctgccatgaattctcctccggtgcttgttgacgtcgccatcacctacgcgttgttggtgggtgccatcctgctagacatggtgtcgctgctgtcggcggccggatcaggctgggcgtacgcctacctggtccttggcatgccgagacgacgacatgggtggctgtaccgcgcagccgtgcacagtgggatgtggcgtcggcttcacctcgggctggagtacctccgcgagctcgtcaatgtgcatggcagaaggaggtggtccggtgcgattgggcagtacaacgtactgcagttttgtactgcaactagtgagaagaggaactataccaccacaacagaagagattcctgaaggtgtcatgaaattggtctttgaggagctgacaagagtgattttgaggactaatatggaggggaatagtgggactggtaataaggatatgagtaaggaggggattgggttggctaagaaagatctgactaacaatccctcggatcacatggaagggattggatctgacctgggtgatcattcttcacaccatgtgaagtggattgggacaagtaataaggacctgactaataagtcttcggaccatgttgagaggaatgagtctgatctgaatgataattcttcgggccatggggaagggattggatctggtaataagcacctaagtaataattcttcgaaccacgtggaggggattgggtctgacctgagtgataattgttcggaccatgaggaagggattggctctggtgagaaggacatgatgaatttttcgagcgatgaaacctttgggtctggtaggaaggacacgagtcataagtctttggacaacgtggacgggattgggtacgacttgagtgataattcttcggaccatgaggaagagattaggtctggtaataagtcttcggaccagatgaagaatgagtatgtcactgtagagtttactccgaagttgcgacgtggtgttcgccgccaaacacccgaagtgagcaaaccttcagcagaactaacaaagcaagagggtgcggccacagactcggttggtttaatcaaggcagaaaggggccagctcgcactgcgtaatctgatggccaagaaggaaggtttgggtgatctcaaacggtacctccgcgacgagatccaggagggcatcctcatctggcacatcgctacagacgtcttcctccgcacatctgagtccgacgagccggcggccatgaaacaacaacatgactctgatcatcagaccgaccagcgtgtggaagcaattaagcttctatccaactacatgatattcctcatggtggaacgcccatcaatggtaccaggcctcgcccttggcaagctgtacagacaaacttgcagggcactgtcgaaggagcttgcccccggcgtcaatggcgatgctaacaaacttgcagaaattctggccacgaagaagagggacaacccagtgttgcagcaggatgggaagctagcccttcgcggtaatgccctgcggtatgcaaccaagctagcactcatgcttgccgacctcaacgaaaagtttgcacacgaatccacgaccctgaatggcaagccgacgtctatcccggaaaagaaaagggatgacgacttggtgcaatttttgtttgagatgtgggtggagatgctcctctacgtcagccaccggtgtagcagggagtcacacgccaagaggattggtgaaggcggcgagctgacaaccgtcgtctggcttatggcagaacaagctggcaagttctacatcgataaagaacttagtgtagccgaagaagcagaacaagcagaagaaaaagatgatgataattatgtacttgttatatctccttaa
More
|
|||||||
| Protein seq | MAAPAHYRRMVAVGVGSPVKYNDNVAVQFVNAWEIEFIVVSSFLLQFEVCKSALVDSSSAKAKNISYLRRTIFSDVWEWEKRWTVFQMEVSLLYDIMYTKAGVIHTWYGYCLRVFSPLATAAALLLFHLSRSSTSSVGATSIAAMNSPPVLVDVAITYALLVGAILLDMVSLLSAAGSGWAYAYLVLGMPRRRHGWLYRAAVHSGMWRRLHLGLEYLRELVNVHGRRRWSGAIGQYNVLQFCTATSEKRNYTTTTEEIPEGVMKLVFEELTRVILRTNMEGNSGTGNKDMSKEGIGLAKKDLTNNPSDHMEGIGSDLGDHSSHHVKWIGTSNKDLTNKSSDHVERNESDLNDNSSGHGEGIGSGNKHLSNNSSNHVEGIGSDLSDNCSDHEEGIGSGEKDMMNFSSDETFGSGRKDTSHKSLDNVDGIGYDLSDNSSDHEEEIRSGNKSSDQMKNEYVTVEFTPKLRRGVRRQTPEVSKPSAELTKQEGAATDSVGLIKAERGQLALRNLMAKKEGLGDLKRYLRDEIQEGILIWHIATDVFLRTSESDEPAAMKQQHDSDHQTDQRVEAIKLLSNYMIFLMVERPSMVPGLALGKLYRQTCRALSKELAPGVNGDANKLAEILATKKRDNPVLQQDGKLALRGNALRYATKLALMLADLNEKFAHESTTLNGKPTSIPEKKRDDDLVQFLFEMWVEMLLYVSHRCSRESHAKRIGEGGELTTVVWLMAEQAGKFYIDKELSVAEEAEQAEEKDDDNYVLVISP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 8.574953 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0144300 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g05700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0144300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0001620 | RBH | 0.0 | 2.542290 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0001800 | RBH | 0.0 | 10.150220 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001530 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0001770 | RBH | 0.0 | 1.118072 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0001750 | RBH | 0.0 | 5.818364 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0040700 | RBH | 0.011206 | 0.030475 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0002500 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0040000 | RBH | 0.005775 | 2.4757235 | 0.010662 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0002010 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0001980 | RBH | 0.0 | 11.745767 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0001810 | RBH | 0.0 | 34.080437 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0001620 | RBH | 0.0 | 0.368675 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0001920 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001830 | RBH | 0.0 | 1.509456 | 0.226015 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001850 | RBH | 0.0 | 0.0 | 0.0 |
