Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0001040 | OGI:02047340 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:1268751-1269465 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcatcgccgactgacgacgggaagagatggcgtcagcagcatgtcgcaaggtagctcaagggctcctgtcgtcgtccgcccaccatccaggttccctcttggtcccagtggaatacctctcatttgttgcccaagttgtgggaaaggggtagaggagtacaaatcgaagaagcagggagggaggattttcttcaagtgccctgataatgaacaatatgtatgtaattttgcttaatcctttcatgtaactgttttattggtgatatgctgagtagttcgggtgttctgttgtaggatccaaattcttgtagttttttcaagtggattgacagttatttgaagatgatcgaaggcatggatctatatactcctgaagatggtgttgtaggtgatgattttgccgcaccaattgcacatgttgttcctgcacatcttgatgccgatggtgacaaagaggtgactggaaagatggctactggtggaaagatggatgtgatgaaaatgttggtgttgatcaatctcggccagttagtggttatgtttgttgctttgtgtgtgatgtttctgaagtagatggctgcatgtaaaccaaatgaaaaatgttagtgtgcagccatttcagaacaatgaatggattgtggctgcatgtatgcttgtaaaccaccttaatggtttgaaattattggtgaattttggcatgactttgccctgtt
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| CDS seq | atgcatcgccgactgacgacgggaagagatggcgtcagcagcatgtcgcaaggtagctcaagggctcctgtcgtcgtccgcccaccatccaggttccctcttggtcccagtggaatacctctcatttgttgcccaagttgtgggaaaggggtagaggagtacaaatcgaagaagcagggagggaggattttcttcaagtgccctgataatgaacaatatgatccaaattcttgtagttttttcaagtggattgacagttatttgaagatgatcgaaggcatggatctatatactcctgaagatggtgttgtaggtgatgattttgccgcaccaattgcacatgttgttcctgcacatcttgatgccgatggtgacaaagaggtgactggaaagatggctactggtggaaagatggatgtgatgaaaatgttggtgttgatcaatctcggccagttagtggttatgtttgttgctttgtgtgtgatgtttctgaagtag
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| Protein seq | MHRRLTTGRDGVSSMSQGSSRAPVVVRPPSRFPLGPSGIPLICCPSCGKGVEEYKSKKQGGRIFFKCPDNEQYDPNSCSFFKWIDSYLKMIEGMDLYTPEDGVVGDDFAAPIAHVVPAHLDADGDKEVTGKMATGGKMDVMKMLVLINLGQLVVMFVALCVMFLK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0001040 | OsNaBo_04g0001040.01 | Chr04 | 1268751 | 1269465 | + | NAM | ||
| CDS seq | atgcatcgccgactgacgacgggaagagatggcgtcagcagcatgtcgcaaggtagctcaagggctcctgtcgtcgtccgcccaccatccaggttccctcttggtcccagtggaatacctctcatttgttgcccaagttgtgggaaaggggtagaggagtacaaatcgaagaagcagggagggaggattttcttcaagtgccctgataatgaacaatatgatccaaattcttgtagttttttcaagtggattgacagttatttgaagatgatcgaaggcatggatctatatactcctgaagatggtgttgtaggtgatgattttgccgcaccaattgcacatgttgttcctgcacatcttgatgccgatggtgacaaagaggtgactggaaagatggctactggtggaaagatggatgtgatgaaaatgttggtgttgatcaatctcggccagttagtggttatgtttgttgctttgtgtgtgatgtttctgaagtag
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| Protein seq | MHRRLTTGRDGVSSMSQGSSRAPVVVRPPSRFPLGPSGIPLICCPSCGKGVEEYKSKKQGGRIFFKCPDNEQYDPNSCSFFKWIDSYLKMIEGMDLYTPEDGVVGDDFAAPIAHVVPAHLDADGDKEVTGKMATGGKMDVMKMLVLINLGQLVVMFVALCVMFLK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0024800 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0000960 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0031920 | RBH | 1.320143 | 0.000000 | 1.526601 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0395600 | SBH | 0 | 0.0652635 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0023050 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0063200 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0019650 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0019620 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0023290 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0023310 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0019430 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G009180 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
