Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0000710 | OGI:04002990 | 11/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:893042-895000 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtcatactagtatagcaatagattggaaattaagcgcatatatcgtcttccacattcggccctgcatatactgatctgttgaaacagtacaattacagactcctaaatctgcagttctgctaattgaattaccattctactacgaataacagttctgcaggcaaaccccaaaagaactgacgaaactaaaactagtttatcatcaagcccttgaaaacaaacttttccttgtctccgaatttttcccaaaaaTaaagagagttcggcaactaccaccatcagcttccaaatccatcaaaagtcatgtctcttaatcttaaaaacctgaaaaacaaacaggaaacattatggacacctgaatagtcatatgaaaatttgtttggaaagtgacaattattctgtgttaatttggaaaactaaaataagaagtgagttatcatctacaattctggaacaaaaatatttttaagacaaggaagaaggtcaggcacgattaagcccagtacatatactcacaattttcagcttttaagcactcaaccatacttgctatagaaaacaaggactatttggacagataaagtacttaccctgatacatcatctctacttgtctttgtctgaacggaccagaaagccagcgtctcatttttcatattgttcttccctgaaaggttaatctttgaatataagcacagaacttgcaatgccaacagttgcaatatcaacacaaatgagttatatgtcgatttgttcgtactccgtagttctgcactacatatagtaataattgagctagtcaatgatattcatgtttttgtcatatctgtgagaccatgggcagtggcagcactgctgaatgtggtaaattcatcagatatatcatataattattaattatgttcgtgatagagcaggtagctccttggaaaaagaaaagtatgcataatacctgttatatttgtgtttcttggagtatcaaccaataatgtaggacctgtccagcaaagaggaaatcggtcaactttaaatatctataactacctgacaaattttcactcaagtttcatttgcaatttcctttggaatgtattacattacagagagtgcacttctaaagaattgttgaataggcatttcacacttttcacagctattatctcacaacatttcttcagctaaactgttaattttgttgatcgaatcatatcaggtgaaccttcaatgttggaacaaagccaacgAaaaaattgatctttgcaagcagcaggacaagaagctgtgctctgcacctctgcatgagagaagcaactggaacaatgacaggctaatactagcacctaacactgaaatggagctgtctaatttcacttgatcctgtcaactgtcagtatacaaagggagatcgtgcaaaatcagaaagactggtttggcttctactcgctcatcttaatgattggtgggagaaaggacagacaccgagcaccaactaggttagaaatatgactaatacttcaatccatacagccactcaatacatcaactagcaacaaattcatccactagAaaagtcacaaaatcttttcagagtaggaaaagaggagatcaagaatcagacctgcttcttgatgtccgggctgttgccctcgaccttgccctctcccgcaaccggtgaatccgaagcgaggaaggagagatggcgagcggcggcggctgtagcgggatggagaccggcggtgaccgagggcgggaaggagaccagtggtggctggagatatgctgctcccggacctcgcgccgcctccaaacctagcgccgtgaggagtcgaggaagatgagcgccgtgtatgctcgggaagaaaaaaatcgtctccgagacgatttttctgtaccgggggtttggcatggatcgggtggagaatttcccccaccccacctcgggccaggcgaacgcgtacat
More
|
||||||||||
| CDS seq | atgtacgcgttcgcctggcccgaggtggggtgggggaaattctccacccgatccatgccaaacccccggtacagaaaaatcgtctcggagacgatttttttcttcccgagcatacacggcgctcatcttcctcgactcctcacggcgctaggtttggaggcggcgcgaggtccgggagcagcatatctccagccaccactggtctccttcccgccctcggtcaccgccggtctccatcccgctacagccgccgccgctcgccatctctccttcctcgcttcggattcaccggttgcgggagagggcaaggtcgagggcaacagcccggacatcaagaagcaggtttttaagattaagagacatgacttttga |
||||||||||
| Protein seq | MYAFAWPEVGWGKFSTRSMPNPRYRKIVSETIFFFPSIHGAHLPRLLTALGLEAARGPGAAYLQPPLVSFPPSVTAGLHPATAAAARHLSFLASDSPVAGEGKVEGNSPDIKKQVFKIKRHDF |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0000710 | OsNaBo_04g0000710.01 | Chr04 | 893336 | 895000 | - | NAM | ||
| CDS seq | atgtacgcgttcgcctggcccgaggtggggtgggggaaattctccacccgatccatgccaaacccccggtacagaaaaatcgtctcggagacgatttttttcttcccgagcatacacggcgctcatcttcctcgactcctcacggcgctaggtttggaggcggcgcgaggtccgggagcagcatatctccagccaccactggtctccttcccgccctcggtcaccgccggtctccatcccgctacagccgccgccgctcgccatctctccttcctcgcttcggattcaccggttgcgggagagggcaaggtcgagggcaacagcccggacatcaagaagcaggtttttaagattaagagacatgacttttga
More
|
|||||||
| Protein seq | MYAFAWPEVGWGKFSTRSMPNPRYRKIVSETIFFFPSIHGAHLPRLLTALGLEAARGPGAAYLQPPLVSFPPSVTAGLHPATAAAARHLSFLASDSPVAGEGKVEGNSPDIKKQVFKIKRHDF |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0000710 | OsNaBo_04g0000710.02 | Chr04 | 893042 | 894982 | - | IsoSeq | ||
| CDS seq | atggtggtagttgccgaactctctttAtttttgggaaaaattcggagacaaggaaaagtttgttttcaagggcttgatgataaactagttttagtttcgtcagttcttttggggtttgcctgcagaactgttattcgtagtagaatggtaattcaattagcagaactgcag |
|||||||
| Protein seq | MVVVAELSLFLGKIRRQGKVCFQGLDDKLVLVSSVLLGFACRTVIRSRMVIQLAELQ |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.977478 | 20.476921 | 7.060372 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0002280 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0017500 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0015300 | RBH | 0 | 0.579839 | 0.00089 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000700 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0000730 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0002250 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
