Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0000670 | OGI:04002930 | 10/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:885440-888396 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcataaaatccttctgtagggaatgcgtgctatatcgtcccaatttgatcccaagAaaaggaatttgcagccaatggatcggaagtacagcagagatttaggtagttttggaagggaccggatacttccacagaaatcaaaatataactccttaagtgcggtgagattctccaagttgttgggtaagctgttccaatggcaggaagtAaacccaaggtaagctagtgaagtcaagtgctctaggatccactctcccctcagttccaccgagtgttcgagcgcaagccatttcagtgatggatatgcccctcttgacaaaagcttgggtacaagggacatgtcatcgacggttagccgaggaactgcgtgtgctttgccggctactttcaagtccataaggctgggacacttgatgatggtaaggtgctccaggctatcaagatggttcaggccttccaagcgaactaattgcttacagccaccgatgtagagatCcctaagcctcactagagacctcattgtctcagaaggtatctctgtgaaagagtcaatttgacttagtttcaggctacccaggacagtgcatcctctcaatgaatcgcgcaggacagtgtcttcgacagtgcatcctgtcaagtggagacattctagggatgcaggaaacaacctttggtcatccatggatgtcacctccaaacgcctgcagccgctgatttccaggctcttcagcatgcctggaagtcttgggagccttgtcagattgggaagaacattgagcctaagcttgcgaaggtcagtgaagagcttggcgatctcagggagagtttccaggttgtaacactccctgagttcgaggaattgcaggttactgacgcccccatgtttccttgacagccaacttggtgttgtgcgacccaggtagtggcagatgttgaggcatgtaagttgctctggtggttggaggccgtcgagtatctccacttggagctgtagatccttgtcagctttgacataggatgcgtgataagcatgccattcaagtgacaatgttgtgaggcacttcttctctgtcagattggcttctagagctttctccttgctctcaacactctcaaggccactgattttcaagctgccacgaaggttattttgcttcatcagctgctttaaccgatacgcttcctccttccttaccttgaagtgacttagctcttgcagttgctttaaatcctccacgtaaggaattcccaaatcaacataaggagatgaaatagaccgcaagttaatcagctggctgctcatccttttgacattggaacagtttaaatctaaataatatgaaagagggaactctagggtctgcaaatggtagagtttgccaaattctgttggcaacttcacctgtcttatatgggatcccAaaatgctgagAaaacgtaaatgctttaagccacaggctgactccgggacaatcactctatcttgatccagatatgtttgcaccacacgtaacttcttcaattctttcagcattcgctcaagaacttgttctgttatccccctcgatccatcagcgctaatgattaatgtccggagtttcttcattttgtagatatcatgtttagacttcattgcattgctggaagtaataaacagatggcggacatcggaacggaacacttccacctcatcccccagaactcgtaagcaatcatttccggcaaccatctctgccaattcgtgcagcatatcaggtatagtaaaccactcatcgtcactgtcagcaagctttccttctgattttataaatgaccatgactttaggtcttcaaagtatttttcacctatatcttccattttctgtccatcgctagtcttgataaacccttcagccatccacagcttaaccaatgcattgcgtttgaaccggtagttccgtggaaacatactacagtaagcaaagcatcgccggacctgttcgttaagtttctggtagctccgccactgttcttgtatgatgtcagtacacggtacttcattatctctaattttttgccaagagctagcatctaaatttttgcatagcctgtctcccactcgccttgctgcaaccggtaatcttcttagcttatttgcgatccctctgccaatcgaatgtagtttttgaagtttttggctatcaagtactctcacaccatcaagtgcataatgcatgaatagatcaaggaaatcattatcatccatctcagaaatttcaacGgggctcttggcacctagggacatggctgcatctttggacaaagctgtaactaggatcttacttccccgcttcccaaaattcagtgtattacgtacttggtcccgttcttgctgagcaacatccgactggagaccatccagcgccagcaagaaccttttgtctctcaattccgcttttggtacttataggatggtcgcccaatggctccttcgagcatctgtctgtaaattttatccacactgaaactttgagaaacatcaacccacatgacaggtgaaaaatggccatcctctttttcatactcacagacatattgtgcaaggattgtcttcccggatccagcaatgccatagatgccaattgttgttgaataacacgggtagttgctggagcctggttcaccgtcccctgctgcttcgcgcaacatatttactatctttgtacgatctacatctcttccaaatactcgccccgtagctgaggaagtagtgcccgacatcgtctcctcgatagttgtctccgtcattaataattctcgattcacaagcccgcccgcccttagtttttgtagcttctctaggcttttcttcagcttactggttttccccaagagggagagattgtgtagcttcttctggcTtttcttcagcagctcacgtaaccatgagtcggtattagagggagagctgacctgcat
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| CDS seq | atgcaggtcagctctccctctaataccgactcatggttacgtgagctgctgaagaaaAgccagaagaagctacacaatctctccctcttggggaaaaccagtaagctgaagaaaagcctagagaagctacaaaaactaagggcgggcgggcttgtgaatcgagaattattaatgacggagacaactatcgaggagacgatgtcgggcactacttcctcagctacggggcgagtatttggaagagatgtagatcgtacaaagatagtaaatatgttgcgcgaagcagcaggggacggtgaaccaggctccagcaactacccgtgttattcaacaacaattggcatctatggcattgctggatccgggaagacaatccttgcacaatatgtctgtgagtatgaaaaagaggatggccatttttcacctgtcatgtgggttgatgtttctcaaagtttcagtgtggataaaatttacagacagatgctcgaaggagccattgggcgaccatcctataagttcttgctggcgctggatggtctccagtcggatgttgctcagcaagaacgggaccaagtacgtaatacactgaattttgggaagcggggaagtaagatcctagttacagctttgtccaaagatgcagccatgtccctaggtgccaagagcccCgttgaaatttctgagatggatgataatgatttccttgatctattcatgcattatgcacttgatggtgtgagagtacttgatagccaaaaacttcaaaaactacattcgattggcagagggatcgcaaataagctaagaagattaccggttgcagcaaggcgagtgggagacaggctatgcaaaaatttagatgctagctcttggcaaaaaattagagataatgaagtaccgtgtactgacatcatacaagaacagtggcggagctaccagaaacttaacgaacaggtccggcgatgctttgcttactgtagtatgtttccacggaactaccggttcaaacgcaatgcattggttaagctgtggatggctgaagggtttatcaagactagcgatggacagaaaatggaagatataggtgaaaaatactttgaagacctaaagtcatggtcatttataaaatcagaaggaaagcttgctgacagtgacgatgagtggtttactatacctgatatgctgcacgaattggcagagatggttgccggaaatgattgcttacgagttctgggggatgaggtggaagtgttccgttccgatgtccgccatctgtttattacttccagcaatgcaatgaagtctaaacatgatatctacaaaatgaagaaactccggacattaatcattagcgctgatggatcgagggggataacagaacaagttcttgagcgaatgctgaaagaattgaagaagttacgtgtggtgcaaacatatctggatcaagatagagtgattgtcccggagtcagcctgtggcttaaagcatttacgtttTctcagcatttTgggatcccatataagacaggtgaagttgccaacagaatttggcaaactctaccatttgcagaccctagagttccctctttcatattatttagatttaaactgttccaatgtcaaaaggatgagcagccagctgattaacttgcggtctatttcatctccttatgttgatttgggaattccttacgtggaggatttaaagcaactgcaagagctaagtcacttcaaggtaaggaaggaggaagcgtatcggttaaagcagctgatgaagcaaaataaccttcgtggcagcttgaaaatcagtggccttgagagtgttgagagcaaggagaaagctctagaagccaatctgacagagaagaagtgcctcacaacattgtcacttgaatggcatgcttatcacgcatcctatgtcaaagctgacaaggatctacagctccaagtggagatactcgacggcctccaaccaccagagcaacttacatgcctcaacatctgccactacctgggtcgcacaacaccaagttggctgtcaaggaaacatgggggcgtcagtaacctgcaattcctcgaactcagggagtgttacaacctggaaactctccctgagatcgccaagctcttcactgaccttcgcaagcttaggctcaatgttcttcccaatctgacaaggctcccaagacttccaggcatgctgaagagcctggaaatcagcggctgcaggcgtttggaggtgacatccatggatgaccaaaggttgtttcctgcatccctagaatgtctccacttgacaggatgcactgtcgaagacactgtcctgcgcgattcattgagaggatgcactgtcctgggtagcctgaaactaagtcaaattgactctttcacagagataccttctgagacaatgaggtctctagtgaggcttaggGatctctacatcggtggctgtaagcaattagttcgcttggaaggcctgaaccatcttgatagcctggagcaccttaccatcatcaagtgtcccagccttatggacttgaaagtagccggcaaagcacacgcagttcctcggctaaccgtcgatgacatgtcccttgtacccaagcttttgtcaagaggggcatatccatcactgaaatggcttgcgctcgaacactcggtggaactgaggggagagtggatcctagagcacttgacttcactagcttaccttgggttTacttcctgccattggaacagcttacccaacaacttggagaatctcaccgcacttaaggagttatattttgatttctgtggaagtatccggtcccttccaaaactacctaaatctctgctgtacttccgatccattggctgcaaattcctttTcttgggatcaaattgggacgatatagcacgcattccctacagaaggattttatga
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| Protein seq | MQVSSPSNTDSWLRELLKKSQKKLHNLSLLGKTSKLKKSLEKLQKLRAGGLVNRELLMTETTIEETMSGTTSSATGRVFGRDVDRTKIVNMLREAAGDGEPGSSNYPCYSTTIGIYGIAGSGKTILAQYVCEYEKEDGHFSPVMWVDVSQSFSVDKIYRQMLEGAIGRPSYKFLLALDGLQSDVAQQERDQVRNTLNFGKRGSKILVTALSKDAAMSLGAKSPVEISEMDDNDFLDLFMHYALDGVRVLDSQKLQKLHSIGRGIANKLRRLPVAARRVGDRLCKNLDASSWQKIRDNEVPCTDIIQEQWRSYQKLNEQVRRCFAYCSMFPRNYRFKRNALVKLWMAEGFIKTSDGQKMEDIGEKYFEDLKSWSFIKSEGKLADSDDEWFTIPDMLHELAEMVAGNDCLRVLGDEVEVFRSDVRHLFITSSNAMKSKHDIYKMKKLRTLIISADGSRGITEQVLERMLKELKKLRVVQTYLDQDRVIVPESACGLKHLRFLSILGSHIRQVKLPTEFGKLYHLQTLEFPLSYYLDLNCSNVKRMSSQLINLRSISSPYVDLGIPYVEDLKQLQELSHFKVRKEEAYRLKQLMKQNNLRGSLKISGLESVESKEKALEANLTEKKCLTTLSLEWHAYHASYVKADKDLQLQVEILDGLQPPEQLTCLNICHYLGRTTPSWLSRKHGGVSNLQFLELRECYNLETLPEIAKLFTDLRKLRLNVLPNLTRLPRLPGMLKSLEISGCRRLEVTSMDDQRLFPASLECLHLTGCTVEDTVLRDSLRGCTVLGSLKLSQIDSFTEIPSETMRSLVRLRDLYIGGCKQLVRLEGLNHLDSLEHLTIIKCPSLMDLKVAGKAHAVPRLTVDDMSLVPKLLSRGAYPSLKWLALEHSVELRGEWILEHLTSLAYLGFTSCHWNSLPNNLENLTALKELYFDFCGSIRSLPKLPKSLLYFRSIGCKFLFLGSNWDDIARIPYRRIL |
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| Function | Disease resistance protein RGA2 [UniProtKB/Swiss-Prot:Q7XBQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0000670 | OsNaBo_04g0000670.01 | Chr04 | 885440 | 888396 | - | NAM | ||
| CDS seq | atgcaggtcagctctccctctaataccgactcatggttacgtgagctgctgaagaaaAgccagaagaagctacacaatctctccctcttggggaaaaccagtaagctgaagaaaagcctagagaagctacaaaaactaagggcgggcgggcttgtgaatcgagaattattaatgacggagacaactatcgaggagacgatgtcgggcactacttcctcagctacggggcgagtatttggaagagatgtagatcgtacaaagatagtaaatatgttgcgcgaagcagcaggggacggtgaaccaggctccagcaactacccgtgttattcaacaacaattggcatctatggcattgctggatccgggaagacaatccttgcacaatatgtctgtgagtatgaaaaagaggatggccatttttcacctgtcatgtgggttgatgtttctcaaagtttcagtgtggataaaatttacagacagatgctcgaaggagccattgggcgaccatcctataagttcttgctggcgctggatggtctccagtcggatgttgctcagcaagaacgggaccaagtacgtaatacactgaattttgggaagcggggaagtaagatcctagttacagctttgtccaaagatgcagccatgtccctaggtgccaagagcccCgttgaaatttctgagatggatgataatgatttccttgatctattcatgcattatgcacttgatggtgtgagagtacttgatagccaaaaacttcaaaaactacattcgattggcagagggatcgcaaataagctaagaagattaccggttgcagcaaggcgagtgggagacaggctatgcaaaaatttagatgctagctcttggcaaaaaattagagataatgaagtaccgtgtactgacatcatacaagaacagtggcggagctaccagaaacttaacgaacaggtccggcgatgctttgcttactgtagtatgtttccacggaactaccggttcaaacgcaatgcattggttaagctgtggatggctgaagggtttatcaagactagcgatggacagaaaatggaagatataggtgaaaaatactttgaagacctaaagtcatggtcatttataaaatcagaaggaaagcttgctgacagtgacgatgagtggtttactatacctgatatgctgcacgaattggcagagatggttgccggaaatgattgcttacgagttctgggggatgaggtggaagtgttccgttccgatgtccgccatctgtttattacttccagcaatgcaatgaagtctaaacatgatatctacaaaatgaagaaactccggacattaatcattagcgctgatggatcgagggggataacagaacaagttcttgagcgaatgctgaaagaattgaagaagttacgtgtggtgcaaacatatctggatcaagatagagtgattgtcccggagtcagcctgtggcttaaagcatttacgtttTctcagcatttTgggatcccatataagacaggtgaagttgccaacagaatttggcaaactctaccatttgcagaccctagagttccctctttcatattatttagatttaaactgttccaatgtcaaaaggatgagcagccagctgattaacttgcggtctatttcatctccttatgttgatttgggaattccttacgtggaggatttaaagcaactgcaagagctaagtcacttcaaggtaaggaaggaggaagcgtatcggttaaagcagctgatgaagcaaaataaccttcgtggcagcttgaaaatcagtggccttgagagtgttgagagcaaggagaaagctctagaagccaatctgacagagaagaagtgcctcacaacattgtcacttgaatggcatgcttatcacgcatcctatgtcaaagctgacaaggatctacagctccaagtggagatactcgacggcctccaaccaccagagcaacttacatgcctcaacatctgccactacctgggtcgcacaacaccaagttggctgtcaaggaaacatgggggcgtcagtaacctgcaattcctcgaactcagggagtgttacaacctggaaactctccctgagatcgccaagctcttcactgaccttcgcaagcttaggctcaatgttcttcccaatctgacaaggctcccaagacttccaggcatgctgaagagcctggaaatcagcggctgcaggcgtttggaggtgacatccatggatgaccaaaggttgtttcctgcatccctagaatgtctccacttgacaggatgcactgtcgaagacactgtcctgcgcgattcattgagaggatgcactgtcctgggtagcctgaaactaagtcaaattgactctttcacagagataccttctgagacaatgaggtctctagtgaggcttaggGatctctacatcggtggctgtaagcaattagttcgcttggaaggcctgaaccatcttgatagcctggagcaccttaccatcatcaagtgtcccagccttatggacttgaaagtagccggcaaagcacacgcagttcctcggctaaccgtcgatgacatgtcccttgtacccaagcttttgtcaagaggggcatatccatcactgaaatggcttgcgctcgaacactcggtggaactgaggggagagtggatcctagagcacttgacttcactagcttaccttgggttTacttcctgccattggaacagcttacccaacaacttggagaatctcaccgcacttaaggagttatattttgatttctgtggaagtatccggtcccttccaaaactacctaaatctctgctgtacttccgatccattggctgcaaattcctttTcttgggatcaaattgggacgatatagcacgcattccctacagaaggattttatga
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| Protein seq | MQVSSPSNTDSWLRELLKKSQKKLHNLSLLGKTSKLKKSLEKLQKLRAGGLVNRELLMTETTIEETMSGTTSSATGRVFGRDVDRTKIVNMLREAAGDGEPGSSNYPCYSTTIGIYGIAGSGKTILAQYVCEYEKEDGHFSPVMWVDVSQSFSVDKIYRQMLEGAIGRPSYKFLLALDGLQSDVAQQERDQVRNTLNFGKRGSKILVTALSKDAAMSLGAKSPVEISEMDDNDFLDLFMHYALDGVRVLDSQKLQKLHSIGRGIANKLRRLPVAARRVGDRLCKNLDASSWQKIRDNEVPCTDIIQEQWRSYQKLNEQVRRCFAYCSMFPRNYRFKRNALVKLWMAEGFIKTSDGQKMEDIGEKYFEDLKSWSFIKSEGKLADSDDEWFTIPDMLHELAEMVAGNDCLRVLGDEVEVFRSDVRHLFITSSNAMKSKHDIYKMKKLRTLIISADGSRGITEQVLERMLKELKKLRVVQTYLDQDRVIVPESACGLKHLRFLSILGSHIRQVKLPTEFGKLYHLQTLEFPLSYYLDLNCSNVKRMSSQLINLRSISSPYVDLGIPYVEDLKQLQELSHFKVRKEEAYRLKQLMKQNNLRGSLKISGLESVESKEKALEANLTEKKCLTTLSLEWHAYHASYVKADKDLQLQVEILDGLQPPEQLTCLNICHYLGRTTPSWLSRKHGGVSNLQFLELRECYNLETLPEIAKLFTDLRKLRLNVLPNLTRLPRLPGMLKSLEISGCRRLEVTSMDDQRLFPASLECLHLTGCTVEDTVLRDSLRGCTVLGSLKLSQIDSFTEIPSETMRSLVRLRDLYIGGCKQLVRLEGLNHLDSLEHLTIIKCPSLMDLKVAGKAHAVPRLTVDDMSLVPKLLSRGAYPSLKWLALEHSVELRGEWILEHLTSLAYLGFTSCHWNSLPNNLENLTALKELYFDFCGSIRSLPKLPKSLLYFRSIGCKFLFLGSNWDDIARIPYRRIL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0111100 | SBH | 0.220501 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g02450 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0111100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0000670 | RBH | 0.185085 | 0.0 | 1.832923 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0000540 | SBH | 0.000000 | 1.852102 | 0.060153 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0000670 | RBH | 0.242524 | 2.406047 | 1.038459 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0000590 | SBH | 0.0 | 0.036378 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000670 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0017200 | RBH | 0.0044295 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0000540 | SBH | 0.0 | 0.228802 | 0.094875 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0011600 | SBH | 0.732554 | 0.268594 | 0.1856915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000680 | RBH | 0.107170 | 0.021732 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0000700 | RBH | 0.067481 | 3.674963 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0000700 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000660 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0000520 | SBH | 0.000000 | 1.841270 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G000720 | RBH | 0.0 | 0.0 | 0.217777 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0000510 | SBH | 0.507399 | 6.560834 | 0.641795 |
