Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0000420 | OGI:04001440 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:571476-572387 | ||||||||
| Gene Symbol | BLEC-STR8, BLEC-Str8, OsBLEC-Str8 | ||||||||||
| DNA seq | ctagtgcttaggttccgtgtgtcgtcgcTtgcgcacaaagcgacacaccagcacggacaccatggccgccacgcccgccaccgacccgaccaccgccagcAgtatcaccacccacgacgtcctcttcttccccccgccgccGtcatcgccgcGCAaCCtctccacggtcagctCccagccacggaCGccgacgatgataTCcccgatcgtcccgccaaagaagCcgacgagcgcggtctgggtggtgcgCccgccggcgaggtatagcggCacgtcgaggagggcattagatggccgtggctcgCcggcggcggcgacgtgcaccgacaggcggtgctcgacggcgtcgtactggatccacaccgtgctgccgctcggcgCcgtagtgcggtttGgcgtgacggtgacgttgaggccgacgtcgggggactctctgccgtaggacttcaccgtgccgacctcgacggcgacgaggctgttcgtggcgttgccgtcgtcgccatcggcggcggatgagacgttgctcccacggaggccactctggtcaaggagcGgtggatacctgTcgaggaGgacgacgaacgcgacgggagaggcggcggcgacgacggTGaacgtcgtgttgaaggatgcctcgcgagCcggcgccccggcGgagccgacgccgtcgcgccagacgtcgatgtcgccggagaggagcaGgaAgccctcggAgacgttgaagccgtgggggaaatcggggtcgaagaggaggcgggcggtggtgaggattgacgcgttggtggcggcgacgaggctgtcgtcgcgtgtcgtcgtcgcgttgaaggccgggtagctgtacgacacaacgtcgccggccgccgccgccgccgccgtcgcgacgccgaGaAgagctaggacgactagcatcat
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| CDS seq | atgatgctagtcgtcctagctcTtCtcggcgtcgcgacggcggcggcggcggcggccggcgacgttgtgtcgtacagctacccggccttcaacgcgacgacgacacgcgacgacagcctcgtcgccgccaccaacgcgtcaatcctcaccaccgcccgcctcctcttcgaccccgatttcccccacggcttcaacgtcTccgagggcTtcCtgctcctctccggcgacatcgacgtctggcgcgacggcgtcggctcCgccggggcgccgGctcgcgaggcatccttcaacacgacgttCAccgtcgtcgccgccgcctctcccgtcgcgttcgtcgtcCtcctcgAcaggtatccacCgctccttgaccagagtggcctccgtgggagcaacgtctcatccgccgccgatggcgacgacggcaacgccacgaacagcctcgtcgccgtcgaggtcggcacggtgaagtcctacggcagagagtcccccgacgtcggcctcaacgtcaccgtcacgcCaaaccgcactacgGcgccgagcggcagcacggtgtggatccagtacgacgccgtcgagcaccgcctgtcggtgcacgtcgccgccgccgGcgagccacggccatctaatgccctcctcgacgtGccgctatacctcgccggcggGcgcaccacccagaccgcgctcgtcgGcttctttggcgggacgatcgggGAtatcatcgtcggCGtccgtggctggGagctgaccgtggagaGGtTGCgcggcgatgaCggcggcggggggaagaagaggacgtcgtgggtggtgatacTgctggcggtggtcgggtcggtggcgggcgtggcggccatggtgtccgtgctggtgtgtcgctttgtgcgcaAgcgacgacacacggaacctaagcactag
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| Protein seq | MMLVVLALLGVATAAAAAAGDVVSYSYPAFNATTTRDDSLVAATNASILTTARLLFDPDFPHGFNVSEGFLLLSGDIDVWRDGVGSAGAPAREASFNTTFTVVAAASPVAFVVLLDRYPPLLDQSGLRGSNVSSAADGDDGNATNSLVAVEVGTVKSYGRESPDVGLNVTVTPNRTTAPSGSTVWIQYDAVEHRLSVHVAAAGEPRPSNALLDVPLYLAGGRTTQTALVGFFGGTIGDIIVGVRGWELTVERLRGDDGGGGKKRTSWVVILLAVVGSVAGVAAMVSVLVCRFVRKRRHTEPKH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0000420 | OsNaBo_04g0000420.01 | Chr04 | 571476 | 572387 | - | NAM | ||
| CDS seq | atgatgctagtcgtcctagctcTtCtcggcgtcgcgacggcggcggcggcggcggccggcgacgttgtgtcgtacagctacccggccttcaacgcgacgacgacacgcgacgacagcctcgtcgccgccaccaacgcgtcaatcctcaccaccgcccgcctcctcttcgaccccgatttcccccacggcttcaacgtcTccgagggcTtcCtgctcctctccggcgacatcgacgtctggcgcgacggcgtcggctcCgccggggcgccgGctcgcgaggcatccttcaacacgacgttCAccgtcgtcgccgccgcctctcccgtcgcgttcgtcgtcCtcctcgAcaggtatccacCgctccttgaccagagtggcctccgtgggagcaacgtctcatccgccgccgatggcgacgacggcaacgccacgaacagcctcgtcgccgtcgaggtcggcacggtgaagtcctacggcagagagtcccccgacgtcggcctcaacgtcaccgtcacgcCaaaccgcactacgGcgccgagcggcagcacggtgtggatccagtacgacgccgtcgagcaccgcctgtcggtgcacgtcgccgccgccgGcgagccacggccatctaatgccctcctcgacgtGccgctatacctcgccggcggGcgcaccacccagaccgcgctcgtcgGcttctttggcgggacgatcgggGAtatcatcgtcggCGtccgtggctggGagctgaccgtggagaGGtTGCgcggcgatgaCggcggcggggggaagaagaggacgtcgtgggtggtgatacTgctggcggtggtcgggtcggtggcgggcgtggcggccatggtgtccgtgctggtgtgtcgctttgtgcgcaAgcgacgacacacggaacctaagcactag
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| Protein seq | MMLVVLALLGVATAAAAAAGDVVSYSYPAFNATTTRDDSLVAATNASILTTARLLFDPDFPHGFNVSEGFLLLSGDIDVWRDGVGSAGAPAREASFNTTFTVVAAASPVAFVVLLDRYPPLLDQSGLRGSNVSSAADGDDGNATNSLVAVEVGTVKSYGRESPDVGLNVTVTPNRTTAPSGSTVWIQYDAVEHRLSVHVAAAGEPRPSNALLDVPLYLAGGRTTQTALVGFFGGTIGDIIVGVRGWELTVERLRGDDGGGGKKRTSWVVILLAVVGSVAGVAAMVSVLVCRFVRKRRHTEPKH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 34.345779 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0110100 | RBH | 0.0 | 0.229282 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g01950 | RBH | 0.0 | 0.148238 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0110100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0000450 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0000470 | RBH | 0.0 | 1.895190 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0000430 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0000500 | RBH | 0.0 | 0.129568 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000440 | RBH | 0.0 | 3.786286 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0007900 | RBH | 0 | 0.788206 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0000460 | RBH | 0.0 | 0.167106 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0010400 | RBH | 0.0188885 | 12.8790265 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000450 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0000460 | RBH | 0.0 | 5.332812 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0000470 | RBH | 0.0 | 11.024612 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000440 | RBH | 0.0 | 0.075658 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0000450 | RBH | 0.0 | 4.765419 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G000470 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0000370 | RBH | 0.0 | 0.0 | 0.0 |
