Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0038110 | OGI:03094400 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:36212043-36218591 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaacagtgaaaacagtgaatcccattttattgatctcaatatgtcctcttttatattgaggatttgtatgtgtacaagcctaggattcactgttattgtgatacaaatactccataatatggctattacaagtcacttgattgatgccattgttgctctttgatgagcctttgatgagatcaaatatggcctcatgatgcttttgtaacacaatgtactctattgctatctgaggagcagcaagctcacaacatacagtacaaaactgccacccattttcatttagaaactcagtagagtggtattagtaaaaactcaattaatcttcagacagaaatatcatctaaagttgcacaaacaaaggaaagcaacctcaggcttctcgtactcaggatcaggaatgattccttgtcgtcccaggctgtgtttagatccaaagtttggatccaaacttcagtcctttcccatcacatcaacctgttatacacacacaacttttcagtcacattatctccaatttcaaccaaaatacaaactttgtgctgaactaaacacagccccagtcttctggctgcaaacagtaacatattaccgtattagttatgacctctgtaaaaatagaacagcacagactgcctattcagaacagccagtgaattatctctaaattaccttcttggcttcaggatccttcttcttctttggaggaagattatcacaatcatcatagatgcttccagttcggttctcagtgatcaatcaagaatgctgtatttggcgtcaggacggatgatcaaggtgtagacgtgtgtcagttgatcggtctcgcatggcacgtccttcttgatcagatggttattgccgttcttaggctgcgttcatttggagaacaaagggagtgagtttgtttctgttttccgcgcgcacgcttcccgaactactaaatggtgtgttttttgcaaaaaaaaaaaattctataggaaagttgctttaaaaaatcatattaatccatttttaaagtttaaaatagttaatactcaattaatcatgcgctaatgacttacctcgttttgcgtatcttcccaatcttctctatctccttctcctcaaacacacccttagtaaggatagcgtgaaccttcttggtggtatacccgcagatatctggtccaaacatgatgctgcaatttcaaaagaaaccgatcaatcaaagatgttgcgctctgaaatgagcacacagaagggaatgcaaggtgatcaaaccatcacctgtacggtgtctcgccaccaaacttcttctggtcaacatcgccgccaagcaatttcacgtagccgccgccgcagtcgagcttcagctcgtgcttcaccgagaactgcagcacgagggtcttgtccttgttgctgaactcagggtactcggccgaaatggcgtagaatctgtagtcctctgatgtctggatacctgcacagagaagcagagtaacttcgcacatgccggaacagaaaagaaaaaacgaaatcagcagcgtggtgtgtgcatcgatcctcacccttgttgttggtgtcgccgttccacttgccggccgtgtggttccactcgccgactgtgttgtcctccttcttccactcagatttgacccaccgatcctcccatccatctgttttcacacacaattcagaattcagaaaccaaccaattctagtttctctgaaaaccatatatgtgtacatcacatttcagacaaagctgaaaaggaatgccggtaccaacaacaggatcgaagttctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaggatcggattcgattaacaaagaacgcacatacacacaaatttgcaattgcttgcttccacaaaaagaaagagatctccaaacaagtaccagagttctcgtacctttagctaaacactttatctcaactatacctataccagttccagacaggaaatgtacaggggcaaaatggtcaattctcaaagtgagcaagtcactataatcctcctcatcggcataacattgttggaagcaatcgagcaaagtgagtggtactattaaattcttttcgtcctctgtcttctctgatcttagcatctcttcgttctcctctgttcatcccctccttccacatgattagctgataaccacgctttccacgtggtttcctttggtcagaggggcaaacaaatccaacaaattgtgtcatcgaacgggaggcaaatgaagcgtaatgtaatatgatggttccgtattagattggacctaatgaatgtggacaatagattttctagcctcactatccctaatgtttatggtgctattaaaatctactaagataattcttatttgctccagcagtgtataaataggaaccacttgaagaatttcattttttccattcaagtctataactctcaaagttacattgccatgttcatgcttctgaacctgcaaaagaaattggtattagtatttcaccctgaaaaggaaaacaaaacagatagagacacaaactatgccggcaaaatttaagaaactacaatagctgccatcccattttaataagtacatgctgctgtgtgacactgttaaaatgctgaaactatattattaaaagattgtttctatgtagcattatgtaatattttaaagaaaacatgtatgcatgtgatgaaggaaaaaattaaaccatcataacacatggaataaatctaagtgatactacctccgtcccaaaataagtgcagtcgtggatatccgtgcccaacatttgaccgtccgtcttatttgaaaattttgtgaaaaaattgaaaatatttaatcacacataaaggactattcatattttatcatctaatagcaataaaaatgctaatcataaaaaaatttcaaataagacgaacggttaaacgttgaacgtgaatagtgcaaaactgcacttatttttgggacggagggagtatttgtgaaaactcaggagcatttcagctgcaagaagcagtggctgccacattaaggtcctattaaattagaaattgagtctgcaagtttagaatatagtcttgaattttttttgagtgtaaatatagttttaaattattagagtctaaattgtacaagtaatgtcagcTttttttttggttagaaatcaagagtctatgtataatgatatactatgttagggacaaatctagagaaaatacagagcatcagcatcagacgagatcaatcaagaagaaatattcaatcctttaacactgcctctcaatgcctctagtttttccatcctagtctataattatccctctagttcttccatcccagtcaattttcgtatccaccttctaatacctctgtcccttttgacaaggttgtctggccatcctcaatgtggtaatattcccgatgtgaaccaacacgcagatcaacttgatgaatcagtttaatggcaagtgaaattctttttatagtcaatagaaatgatcaaattgtaagcataaatttgtgagatactaagttgctaactatttggaacaattaacaaaaggtaaaagatgtgtgattggtaccaaactgtttcttgaatgatggaatggagtaaccaccagtactgtctcccaagccgttcaaaataaacctaaactgaagctggaatagcatcagaacagtctccttttctgataccacatagtactggatatttttgtctgggggttgaattgatggataggctatcctccaagtgtttgaattctacaaggataagtaatcctgtcaacaagactatgtatgtgacagacaaaattcaaccccaaggaaactcctggagtgaatctgacaaaatggatattacctgttcaagaggttagcagcgtgtaatcctgcaaaaggacacttggcaagatattttacccagtagacataaactagttgtattcatcattcaccaataatcttcacaagagcattttccatcctcaaacttatgcaaacactttggatccttgatcagtatatggcgtccatatttctctgaaactagtttggcaaaggtgtggcaatggttacacatccttgcagttttgattatccttatgtttttgaactgtggggaattagaaagcccaaatgcaatagctagcttctcacaatggactccaacaacttcttccttttcttcttcaacatctagagttccaatgccaatgtcaagcatagaatgtcccatcttaaacatcatcgactttaattctgctactgtatcctccaagccaacattatcaccatttgagaacacatacaccttattcctgatttctattgaacagctctcgacctcatctaactttcttcctttgttgggtgtcatctcctctggcacatcaacagtttttccagttagatcttgcagactagaacctaacctttggactctgggatctccaggatcaatcacagacagttctctagctgccaggtgagccagtcttacatttccatgcattacagctgcagtaagaaatgtgtcccagactgttgaattgggtatcaaaggcatctcgtcaataagctcatatgcttcttttagtctccctgaccgaccaagaagatccaccattgctgcataatggtctaattctggagttatattgtaatcattggccatgttgaaaaatgtctgagacccttcagatacctttcccgtgagaccataggccttgataacagtgaccaaagttgtatgatctggcacaacaccttcttgcttcatttgacagaaaagatccaaggcttcatttggagaaccatgcagcacatgagcgagaatgatacagttccaagaaataatgttccttgatgaatgcatatcaaacacagcacacgcactagcaagattaccagattttgaatatgcattgataagtgcatttgcaattttgccatccagttctaaattgtggtgaaaaatacaggcatggatctcccgtactttccaggacgcaactagatttgtgaatgctggaataatgctaaggatggtaatgtagtcaggcctcctcagaagtgcctgcatctgccggaatattcttatggctctatcataataaccattatgcactgatccagcaatgagtatgttccaggttgctgtatccctttttactccatgactttccatcatctggaatagctcaaaagctctctcatcatccccattccgtatgtaccctgagatcattgtattccaggttatcacattgcgccgaacaccatagttttccatcttacagaagagctcgtatgctttgccacaataacctgcttgtgcataccctgaaatcattgaattccaggagaatatatccttgtcaggtatcccactaaatattctccaagctgcaactatttctccacattttgcatacatgtcaaccaaggagttccctgagagcacgttgttaacactgccaaccttaatagcatggctatggagctcctttgcctggtttagtaacttcaaactggcacaagctgagatagcacatgcaattgacatgccgtttggttcaactccagcaagacgcatccgaatgaaacatcgaagtgcctcatcactcctatccatatgaacaaagccagagacaaggctagtccatgtgacgacatctggtgcaactccagactcctccatctgccccagcaattccattgccacgtcaagatccccgaacctggcatagctcgaaatcaatgtattccacgtaacaacccctggctgcgtaccttcctgcctcatggagtcgagcagatgccgtgcctcctcccactcagcagaccggcaataaccaaaaatcatcgaattccatgtgcccaagtccctgcacaccatcttgtcaaacaccttgcgcgcccaccccaagtctccacatttggcatacatcacaagcaccgagttcccaaccggcacatcctttaccctccccatgaaccctctcctgatagccatggaatggagcgccctaccaagctcaaggtcctcggcatatgcgcacgcctgtaaaatccgcgtgatcaggaacctgtccgggagcaccccttcctcgaccatggtcaccgcgagcgcgaggacgtcactgtacattcccctgatggcgtacgcgccgatcatggccgaccaggcgagcaggtccctgcggcccattccgtcgaacacctcccgtgcgtccccgagccgccccgcgcaggaatgcacggtgatgagtttggtctccgcgacgaaccggggctcctccctgctgctgctgcgcgcgggcggcgtcggcctcggctcgtcgcgggggatacggatacgagcgcttctcgattcttggagcgacgaaagcgggaggggaggcgcctgcggggacgccatgacgcggggttcttgcaggcggccatggcggagcttggaggggaagtggtagggtttgtggaggaggaggagggaagggaagggaggaggatggaggaggaggagctccat
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| CDS seq | atggagctcctcctcctccatcctcctcccttcccttccctcctcctcctccacaaaccctaccacttcccctccaagctccgccatggccgcctgcaagaaccccgcgtcatggcgtccccgcaggcgcctcccctcccgctttcgtcgctccaagaatcgagaagcgctcgtatccgtatcccccgcgacgagccgaggccgacgccgcccgcgcgcagcagcagcagggaggagccccggttcgtcgcggagaccaaactcatcaccgtgcattcctgcgcggggcggctcggggacgcacgggaggtgttcgacggaatgggccgcagggacctgctcgcctggtcggccatgatcggcgcgtacgccatcaggggaatgtacagtgacgtcctcgcgctcgcggtgaccatggtcgaggaaggggtgctcccggacaggttcctgatcacgcggattttacaggcgtgcgcatatgccgaggaccttgagcttggtagggcgctccattccatggctatcaggagagggttcatggggagggtaaaggatgtgccggttgggaactcggtgcttgtgatgtatgccaaatgtggagacttggggtgggcgcgcaaggtgtttgacaagatggtgtgcagggacttgggcacatggaattcgatgatttttggttattgccggtctgctgagtgggaggaggcacggcatctgctcgactccatgaggcaggaaggtacgcagccaggggttgttacgtggaatacattgatttcgagctatgccaggttcggggatcttgacgtggcaatggaattgctggggcagatggaggagtctggagttgcaccagatgtcgtcacatggactagccttgtctctggctttgttcatatggataggagtgatgaggcacttcgatgtttcattcggatgcgtcttgctggagttgaaccaaacggcatgtcaattgcatgtgctatctcagcttgtgccagtttgaagttactaaaccaggcaaaggagctccatagccatgctattaaggttggcagtgttaacaacgtgctctcagggaactccttggttgacatgtatgcaaaatgtggagaaatagttgcagcttggagaatatttagtgggatacctgacaaggatatattctcctggaattcaatgatttcagggtatgcacaagcaggttattgtggcaaagcatacgagctcttctgtaagatggaaaactatggtgttcggcgcaatgtgataacctggaatacaatgatctcagggtacatacggaatggggatgatgagagagcttttgagctattccagatgatggaaagtcatggagtaaaaagggatacagcaacctggaacatactcattgctggatcagtgcataatggttattatgatagagccataagaatattccggcagatgcaggcacttctgaggaggcctgactacattaccatccttagcattattccagcattcacaaatctagttgcgtcctggaaagtacgggagatccatgcctgtatttttcaccacaatttagaactggatggcaaaattgcaaatgcacttatcaatgcatattcaaaatctggtaatcttgctagtgcgtgtgctgtgtttgatatgcattcatcaaggaacattatttcttggaactgtatcattctcgctcatgtgctgcatggttctccaaatgaagccttggatcttttctgtcaaatgaagcaagaaggtgttgtgccagatcatacaactttggtcactgttatcaaggcctatggtctcacgggaaaggtatctgaagggtctcagacatttttcaacatggccaatgattacaatataactccagaattagaccattatgcagcaatggtggatcttcttggtcggtcagggagactaaaagaagcatatgagcttattgacgagatgcctttgatacccaattcaacagtctgggacacatttcttactgcagctgtaatgcatggaaatgtaagactggctcacctggcagctagagaactgtctgtgattgatcctggagatcccagagtccaaaggttaggttctagtctgcaagatctaactggaaaaactgttgatgtgccagaggagatgacacccaacaaaggaagaaagttagatgaggtcgagagctgttcaatagaaatcaggaataaggtgtatgtgttctcaaatggtgataatgttggcttggaggatacagtagcagaattaaagtcgatgatgtttaagatgggacattctatgcttgacattggcattggaactctagatgttgaagaagaaaaggaagaagttgttggagtccatttttatgtctactgggtaaaatatcttgccaagtgtccttttgcaggattacacgctgctaacctcttgaacagaatttcacttgccattaaactgattcatcaagttgatctgcgtgttggttcacatcgggaatattaccacattgaggatggccagacaaccttgtcaaaagggacagaggttcagaagcatgaacatggcaatgtaactttgagagttatagacttgaatggaaaaaatgaaattcttcaagtggttcctatttatacactgctggagcaaataagaattatcttagtagattttaatagcaccataaacattagggatagtgaggctagaaaatctattgtccacattcattag
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| Protein seq | MELLLLHPPPFPSLLLLHKPYHFPSKLRHGRLQEPRVMASPQAPPLPLSSLQESRSARIRIPRDEPRPTPPARSSSREEPRFVAETKLITVHSCAGRLGDAREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALAVTMVEEGVLPDRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGWARKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSYARFGDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAGVEPNGMSIACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIPDKDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFELFQMMESHGVKRDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIPAFTNLVASWKVREIHACIFHHNLELDGKIANALINAYSKSGNLASACAVFDMHSSRNIISWNCIILAHVLHGSPNEALDLFCQMKQEGVVPDHTTLVTVIKAYGLTGKVSEGSQTFFNMANDYNITPELDHYAAMVDLLGRSGRLKEAYELIDEMPLIPNSTVWDTFLTAAVMHGNVRLAHLAARELSVIDPGDPRVQRLGSSLQDLTGKTVDVPEEMTPNKGRKLDEVESCSIEIRNKVYVFSNGDNVGLEDTVAELKSMMFKMGHSMLDIGIGTLDVEEEKEEVVGVHFYVYWVKYLAKCPFAGLHAANLLNRISLAIKLIHQVDLRVGSHREYYHIEDGQTTLSKGTEVQKHEHGNVTLRVIDLNGKNEILQVVPIYTLLEQIRIILVDFNSTINIRDSEARKSIVHIH |
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| Function | Pentatricopeptide repeat-containing protein At1g19720 [UniProtKB/Swiss-Prot:Q9FXH1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0038110 | OsNaBo_03g0038110.01 | Chr03 | 36213211 | 36218591 | - | NAM | ||
| CDS seq | atggagctcctcctcctccatcctcctcccttcccttccctcctcctcctccacaaaccctaccacttcccctccaagctccgccatggccgcctgcaagaaccccgcgtcatggcgtccccgcaggcgcctcccctcccgctttcgtcgctccaagaatcgagaagcgctcgtatccgtatcccccgcgacgagccgaggccgacgccgcccgcgcgcagcagcagcagggaggagccccggttcgtcgcggagaccaaactcatcaccgtgcattcctgcgcggggcggctcggggacgcacgggaggtgttcgacggaatgggccgcagggacctgctcgcctggtcggccatgatcggcgcgtacgccatcaggggaatgtacagtgacgtcctcgcgctcgcggtgaccatggtcgaggaaggggtgctcccggacaggttcctgatcacgcggattttacaggcgtgcgcatatgccgaggaccttgagcttggtagggcgctccattccatggctatcaggagagggttcatggggagggtaaaggatgtgccggttgggaactcggtgcttgtgatgtatgccaaatgtggagacttggggtgggcgcgcaaggtgtttgacaagatggtgtgcagggacttgggcacatggaattcgatgatttttggttattgccggtctgctgagtgggaggaggcacggcatctgctcgactccatgaggcaggaaggtacgcagccaggggttgttacgtggaatacattgatttcgagctatgccaggttcggggatcttgacgtggcaatggaattgctggggcagatggaggagtctggagttgcaccagatgtcgtcacatggactagccttgtctctggctttgttcatatggataggagtgatgaggcacttcgatgtttcattcggatgcgtcttgctggagttgaaccaaacggcatgtcaattgcatgtgctatctcagcttgtgccagtttgaagttactaaaccaggcaaaggagctccatagccatgctattaaggttggcagtgttaacaacgtgctctcagggaactccttggttgacatgtatgcaaaatgtggagaaatagttgcagcttggagaatatttagtgggatacctgacaaggatatattctcctggaattcaatgatttcagggtatgcacaagcaggttattgtggcaaagcatacgagctcttctgtaagatggaaaactatggtgttcggcgcaatgtgataacctggaatacaatgatctcagggtacatacggaatggggatgatgagagagcttttgagctattccagatgatggaaagtcatggagtaaaaagggatacagcaacctggaacatactcattgctggatcagtgcataatggttattatgatagagccataagaatattccggcagatgcaggcacttctgaggaggcctgactacattaccatccttagcattattccagcattcacaaatctagttgcgtcctggaaagtacgggagatccatgcctgtatttttcaccacaatttagaactggatggcaaaattgcaaatgcacttatcaatgcatattcaaaatctggtaatcttgctagtgcgtgtgctgtgtttgatatgcattcatcaaggaacattatttcttggaactgtatcattctcgctcatgtgctgcatggttctccaaatgaagccttggatcttttctgtcaaatgaagcaagaaggtgttgtgccagatcatacaactttggtcactgttatcaaggcctatggtctcacgggaaaggtatctgaagggtctcagacatttttcaacatggccaatgattacaatataactccagaattagaccattatgcagcaatggtggatcttcttggtcggtcagggagactaaaagaagcatatgagcttattgacgagatgcctttgatacccaattcaacagtctgggacacatttcttactgcagctgtaatgcatggaaatgtaagactggctcacctggcagctagagaactgtctgtgattgatcctggagatcccagagtccaaaggttaggttctagtctgcaagatctaactggaaaaactgttgatgtgccagaggagatgacacccaacaaaggaagaaagttagatgaggtcgagagctgttcaatagaaatcaggaataaggtgtatgtgttctcaaatggtgataatgttggcttggaggatacagtagcagaattaaagtcgatgatgtttaagatgggacattctatgcttgacattggcattggaactctagatgttgaagaagaaaaggaagaagttgttggagttcagaagcatgaacatggcaatgtaactttgagagttatagacttgaatggaaaaaatgaaattcttcaagtggttcctatttatacactgctggagcaaataagaattatcttagtagattttaatagcaccataaacattagggatagtgaggctagaaaatctattgtccacattcattag
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| Protein seq | MELLLLHPPPFPSLLLLHKPYHFPSKLRHGRLQEPRVMASPQAPPLPLSSLQESRSARIRIPRDEPRPTPPARSSSREEPRFVAETKLITVHSCAGRLGDAREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALAVTMVEEGVLPDRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGWARKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSYARFGDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAGVEPNGMSIACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIPDKDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFELFQMMESHGVKRDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIPAFTNLVASWKVREIHACIFHHNLELDGKIANALINAYSKSGNLASACAVFDMHSSRNIISWNCIILAHVLHGSPNEALDLFCQMKQEGVVPDHTTLVTVIKAYGLTGKVSEGSQTFFNMANDYNITPELDHYAAMVDLLGRSGRLKEAYELIDEMPLIPNSTVWDTFLTAAVMHGNVRLAHLAARELSVIDPGDPRVQRLGSSLQDLTGKTVDVPEEMTPNKGRKLDEVESCSIEIRNKVYVFSNGDNVGLEDTVAELKSMMFKMGHSMLDIGIGTLDVEEEKEEVVGVQKHEHGNVTLRVIDLNGKNEILQVVPIYTLLEQIRIILVDFNSTINIRDSEARKSIVHIH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0038110 | OsNaBo_03g0038110.02 | Chr03 | 36213211 | 36218591 | - | NAM | ||
| CDS seq | atggagctcctcctcctccatcctcctcccttcccttccctcctcctcctccacaaaccctaccacttcccctccaagctccgccatggccgcctgcaagaaccccgcgtcatggcgtccccgcaggcgcctcccctcccgctttcgtcgctccaagaatcgagaagcgctcgtatccgtatcccccgcgacgagccgaggccgacgccgcccgcgcgcagcagcagcagggaggagccccggttcgtcgcggagaccaaactcatcaccgtgcattcctgcgcggggcggctcggggacgcacgggaggtgttcgacggaatgggccgcagggacctgctcgcctggtcggccatgatcggcgcgtacgccatcaggggaatgtacagtgacgtcctcgcgctcgcggtgaccatggtcgaggaaggggtgctcccggacaggttcctgatcacgcggattttacaggcgtgcgcatatgccgaggaccttgagcttggtagggcgctccattccatggctatcaggagagggttcatggggagggtaaaggatgtgccggttgggaactcggtgcttgtgatgtatgccaaatgtggagacttggggtgggcgcgcaaggtgtttgacaagatggtgtgcagggacttgggcacatggaattcgatgatttttggttattgccggtctgctgagtgggaggaggcacggcatctgctcgactccatgaggcaggaaggtacgcagccaggggttgttacgtggaatacattgatttcgagctatgccaggttcggggatcttgacgtggcaatggaattgctggggcagatggaggagtctggagttgcaccagatgtcgtcacatggactagccttgtctctggctttgttcatatggataggagtgatgaggcacttcgatgtttcattcggatgcgtcttgctggagttgaaccaaacggcatgtcaattgcatgtgctatctcagcttgtgccagtttgaagttactaaaccaggcaaaggagctccatagccatgctattaaggttggcagtgttaacaacgtgctctcagggaactccttggttgacatgtatgcaaaatgtggagaaatagttgcagcttggagaatatttagtgggatacctgacaaggatatattctcctggaattcaatgatttcagggtatgcacaagcaggttattgtggcaaagcatacgagctcttctgtaagatggaaaactatggtgttcggcgcaatgtgataacctggaatacaatgatctcagggtacatacggaatggggatgatgagagagcttttgagctattccagatgatggaaagtcatggagtaaaaagggatacagcaacctggaacatactcattgctggatcagtgcataatggttattatgatagagccataagaatattccggcagatgcaggcacttctgaggaggcctgactacattaccatccttagcattattccagcattcacaaatctagttgcgtcctggaaagtacgggagatccatgcctgtatttttcaccacaatttagaactggatggcaaaattgcaaatgcacttatcaatgcatattcaaaatctggtaatcttgctagtgcgtgtgctgtgtttgatatgcattcatcaaggaacattatttcttggaactgtatcattctcgctcatgtgctgcatggttctccaaatgaagccttggatcttttctgtcaaatgaagcaagaaggtgttgtgccagatcatacaactttggtcactgttatcaaggcctatggtctcacgggaaaggtatctgaagggtctcagacatttttcaacatggccaatgattacaatataactccagaattagaccattatgcagcaatggtggatcttcttggtcggtcagggagactaaaagaagcatatgagcttattgacgagatgcctttgatacccaattcaacagtctgggacacatttcttactgcagctgtaatgcatggaaatgtaagactggctcacctggcagctagagaactgtctgtgattgatcctggagatcccagagtccaaaggttaggttctagtctgcaagatctaactggaaaaactgttgatgtgccagaggagatgacacccaacaaaggaagaaagttagatgaggtcgagagctgttcaatagaaatcaggaataaggtgtatgtgttctcaaatggtgataatgttggcttggaggatacagtagcagaattaaagtcgatgatgtttaagatgggacattctatgcttgacattggcattggaactctagatgttgaagaagaaaaggaagaagttgttggagtccatttttatgtctactgggtaaaatatcttgccaagtgtccttttgcaggattacacgctgctaacctcttgaacagaatttcacttgccattaaactgattcatcaagttgatctgcgtgttggttcacatcgggaatattaccacattgaggatggccagacaaccttgtcaaaagggacagaggttcagaagcatgaacatggcaatgtaactttgagagttatagacttgaatggaaaaaatgaaattcttcaagtggttcctatttatacactgctggagcaaataagaattatcttagtagattttaatagcaccataaacattagggatagtgaggctagaaaatctattgtccacattcattag
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| Protein seq | MELLLLHPPPFPSLLLLHKPYHFPSKLRHGRLQEPRVMASPQAPPLPLSSLQESRSARIRIPRDEPRPTPPARSSSREEPRFVAETKLITVHSCAGRLGDAREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALAVTMVEEGVLPDRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGWARKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSYARFGDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAGVEPNGMSIACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIPDKDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFELFQMMESHGVKRDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIPAFTNLVASWKVREIHACIFHHNLELDGKIANALINAYSKSGNLASACAVFDMHSSRNIISWNCIILAHVLHGSPNEALDLFCQMKQEGVVPDHTTLVTVIKAYGLTGKVSEGSQTFFNMANDYNITPELDHYAAMVDLLGRSGRLKEAYELIDEMPLIPNSTVWDTFLTAAVMHGNVRLAHLAARELSVIDPGDPRVQRLGSSLQDLTGKTVDVPEEMTPNKGRKLDEVESCSIEIRNKVYVFSNGDNVGLEDTVAELKSMMFKMGHSMLDIGIGTLDVEEEKEEVVGVHFYVYWVKYLAKCPFAGLHAANLLNRISLAIKLIHQVDLRVGSHREYYHIEDGQTTLSKGTEVQKHEHGNVTLRVIDLNGKNEILQVVPIYTLLEQIRIILVDFNSTINIRDSEARKSIVHIH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0038110 | OsNaBo_03g0038110.03 | Chr03 | 36212706 | 36217642 | - | NAM | ||
| CDS seq | atgtcaattgcatgtgctatctcagcttgtgccagtttgaagttactaaaccaggcaaaggagctccatagccatgctattaaggttggcagtgttaacaacgtgctctcagggaactccttggttgacatgtatgcaaaatgtggagaaatagttgcagcttggagaatatttagtgggatacctgacaaggatatattctcctggaattcaatgatttcagggtatgcacaagcaggttattgtggcaaagcatacgagctcttctgtaagatggaaaactatggtgttcggcgcaatgtgataacctggaatacaatgatctcagggtacatacggaatggggatgatgagagagcttttgagctattccagatgatggaaagtcatggagtaaaaagggatacagcaacctggaacatactcattgctggatcagtgcataatggttattatgatagagccataagaatattccggcagatgcaggcacttctgaggaggcctgactacattaccatccttagcattattccagcattcacaaatctagttgcgtcctggaaagtacgggagatccatgcctgtatttttcaccacaatttagaactggatggcaaaattgcaaatgcacttatcaatgcatattcaaaatctggtaatcttgctagtgcgtgtgctgtgtttgatatgcattcatcaaggaacattatttcttggaactgtatcattctcgctcatgtgctgcatggttctccaaatgaagccttggatcttttctgtcaaatgaagcaagaaggtgttgtgccagatcatacaactttggtcactgttatcaaggcctatggtctcacgggaaaggtatctgaagggtctcagacatttttcaacatggccaatgattacaatataactccagaattagaccattatgcagcaatggtggatcttcttggtcggtcagggagactaaaagaagcatatgagcttattgacgagatgcctttgatacccaattcaacagtctgggacacatttcttactgcagctgtaatgcatggaaatgtaagactggctcacctggcagctagagaactgtctgtgattgatcctggagatcccagagtccaaaggttaggttctagtctgcaagatctaactggaaaaactgttgatgtgccagaggagatgacacccaacaaaggaagaaagttagatgaggtcgagagctgttcaatagaaatcaggaataaggtgtatgtgttctcaaatggtgataatgttggcttggaggatacagtagcagaattaaagtcgatgatgtttaagatgggacattctatgcttgacattggcattggaactctagatgttgaagaagaaaaggaagaagttgttggagtccattgtgagaagctagctattgcatttgggctttctaattccccacagttcaaaaacataaggataatcaaaactgcaaggatgtgtaaccattgccacacctttgccaaactagtttcagagaaatatggacgccatatactgatcaaggatccaaagtgtttgcataagtttgaggatggaaaatgctcttgtgaagattattggtga
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| Protein seq | MSIACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIPDKDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFELFQMMESHGVKRDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIPAFTNLVASWKVREIHACIFHHNLELDGKIANALINAYSKSGNLASACAVFDMHSSRNIISWNCIILAHVLHGSPNEALDLFCQMKQEGVVPDHTTLVTVIKAYGLTGKVSEGSQTFFNMANDYNITPELDHYAAMVDLLGRSGRLKEAYELIDEMPLIPNSTVWDTFLTAAVMHGNVRLAHLAARELSVIDPGDPRVQRLGSSLQDLTGKTVDVPEEMTPNKGRKLDEVESCSIEIRNKVYVFSNGDNVGLEDTVAELKSMMFKMGHSMLDIGIGTLDVEEEKEEVVGVHCEKLAIAFGLSNSPQFKNIRIIKTARMCNHCHTFAKLVSEKYGRHILIKDPKCLHKFEDGKCSCEDYW
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0038110 | OsNaBo_03g0038110.04 | Chr03 | 36212043 | 36213223 | - | IsoSeq | ||
| CDS seq | atgatgattgtgataatcttcctccaaagaagaagaaggatcctgaagccaagaagccagaagactggggctgtgtttagttcagcacaaagtttgtatttt |
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| Protein seq | MMIVIIFLQRRRRILKPRSQKTGAVFSSAQSLYF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AL | Chr03 | 36212706 | 36213312 | - | OsNaBo_03g0038110.03 | OsNaBo_03g0038110.01,OsNaBo_03g0038110.03,OsNaBo_03g0038110.02 | All |
| MX | Chr03 | 36214516 | 36215922 | - | OsNaBo_03g0038110.02 | OsNaBo_03g0038110.02,OsNaBo_03g0038110.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.415538 | 10.690725 | 4.431399 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0807400 | RBH | 3.890210 | 3.939415 | 1.925427 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g59264 | RBH | 2.284448 | 3.130696 | 0.500522 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0807400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0038970 | RBH | 1.148876 | 1.717461 | 3.547994 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0038640 | RBH | 0.502365 | 0.599457 | 3.993814 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0038700 | RBH | 2.619672 | 1.966880 | 9.311357 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0038990 | RBH | 0.361836 | 0.032444 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0038550 | RBH | 16.584902 | 1.506910 | 16.952143 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0576000 | RBH | 10.4244265 | 9.191404 | 17.857596 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0038310 | RBH | 1.275744 | 0.249667 | 1.150302 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0578400 | RBH | 9.4293685 | 9.853313 | 15.5795065 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0038890 | RBH | 0.750287 | 0.051368 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0038850 | RBH | 0.914179 | 1.985272 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0038480 | RBH | 11.617638 | 3.525545 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0038520 | RBH | 2.385359 | 0.893574 | 1.142565 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0038570 | RBH | 0.749172 | 1.548486 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G038340 | RBH | 1.493501 | 1.802785 | 2.639209 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0006610 | RBH | 0.000000 | 0.0 | 0.0 |
