Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0035500 | OGI:03089590 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:34440529-34442563 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagcctgtaaagcgtgtcgttggagacgtggcagtggaagccgacgggaacgacatcgccacgaagtcgtcgtcgtcgtcatcgtcgtggcacaggaacgccggagcggccacgtccatgtgccccggcgacagttggtccaggacgtcgccgccgccgccgtcgagccactgcaccacgcgccgcatgcctgggcgcgccgcgggcagccggtgcgtgcacagcagggcgagcttcagcatcgcctcggcctcgccggcggcgaagccgccgccgagcctcgcgtccaccgcgccggcgatctccccggaccgccacgagcgcagtacccagtccacgagcacgagccgctcgccgccggcggccgcgcgcggctgcacggggcgccgcccgcacacgacctccagcacgaacgcgccgaacgcgaacacgtcgctgcttgtggtggcctggccggtgcgcgtcagctccgggtcgaggtaacccatggtgccgacgatggtggtggtgctcggctcggcgccatggtcgtacaacctcgctacgccgaagtcgccgagccgcctgttcatgttagaatcgagtagcacattgctcgccttgatgtcacggtgaatcaccacctgctcccactcctcgtgaaggtagagcaaaccggatgaggcgcctttgattatgttgatcctctgtgcccaatttaggataggtttaccttcaccgtacaaatacttgtccagactaccatttatcatgtaatcgtacaccaatagaagctctcctttacgccgacagtagccaagtaattgcacaatattacggtgtctaagccgacctaggctcacaatctcggcgatgaattctctcatcccctgcttagaatcatgacaaattttcttaatcgcgacatcaatacctgaccccggcataactcctttgtacaccttcccgaatcctccaacgccaagaaccatgtcatcatgaaatcctttagtcgccttgtgtaagtccttataagcgaaacgatgcggtccaaactcgacctcccaatcttccaccagctcaacataaattgccctcctctgcctcctgaacaataagaacataacaatagcggctaccactgtcactgataggctaacaggtaaccaaattttcacgggcatgtgcttggttgacgcagccgtggccgtgacaggagggaggcttggcaacttggcgtagtccaggtcttgggctatgccggacaggctaaagctccagccaagaacgtagtgagacgtgtcgtcggagcccgtcgacgacgagaatccgacgtacatttggtcggagaacgccgcggagaggttcgccggcttcacggacagcagtggcctcgccggctttggcttggtgagctggtgcagcgtgacgtcgaggcgcgcgtcgccggcgtcgtactccacccacacctgcatggcgcggcggctggtggctcaggttcctgaacgagccgccgggcgtgtagtaccccgccgtgctcgcggcgacggagtccagctcgttcacgtcgacgccgacgtggttgtcgtcgatgtcgcggaactccggcgtgtacatcgtgtcgagctccacggcgaggacgcggccgctcgccgggtcgccgttggtggcgcggttgaagaggcccaggtactcggccgcggcggcgccggagaagtcccgcgtcgaggagacggcgaacgcgatgccgtgcccggcgaggtcggtgaacgacgacatgatgccgaacacgaacgtcgacgtgaaggaccggacgccgccgccgccgccgctcccgttgcggaagccgagcgaccgagcgtagaacgcgtggcccttctcgccgctgccgccggttagccgcaggaggccgtcgggcgtgacggaggcggcaccgtcaagcactagctcgccgtcgccagcgccggcgaacccgttgtaggcgaactcgtcgacggcgccattggcgaccgcgagatcgagcggcaggaggagcaaaagcgttgcaacatgcat
More
|
||||||||||
| CDS seq | atgcatgttgcaacgcttttgctcctcctgccgctcgatctcgcggtcgccaatggcgccgtcgacgagttcgcctacaacgggttcgccggcgctggcgacggcgagctagtgcttgacggtgccgcctccgtcacgcccgacggcctcctgcggctaaccggcggcagcggcgagaagggccacgcgttctacgctcggtcgctcggcttccgcaacgggagcggcggcggcggcggcgtccggtccttcacgtcgacgttcgtgttcggcatcatgtcgtcgttcaccgacctcgccgggcacggcatcgcgttcgccgtctcctcgacgcgggacttctccggcgccgccgcggccgagtacctgggcctcttcaaccgcgccaccaacggcgacccggcgagcggccgcgtcctcgccgtggagctcgacacgatgtacacgccggagttccgcgacatcgacgacaaccacgtcggcgtcgacgtgtgggtggagtacgacgccggcgacgcgcgcctcgacgtcacgctgcaccagctcaccaagccaaagccggcgaggccactgctgtccgtgaagccggcgaacctctccgcggcgttctccgaccaaatgtacgtcggattctcgtcgtcgacgggctccgacgacacgtctcactacgttcttggctggagctttagcctgtccggcatagcccaagacctggactacgccaagttgccaagcctccctcctgtcacggccacggctgcgtcaaccaagcacatgcccgtgaaaatttggttacctgttagcctatcagtgacagtggtagccgctattgttatgttcttattgttcaggaggcagaggagggcaatttatgttgagctggtggaagattgggaggtcgagtttggaccgcatcgtttcgcttataaggacttacacaaggcgactaaaggatttcatgatgacatggttcttggcgttggaggattcgggaaggtgtacaaaggagttatgccggggtcaggtattgatgtcgcgattaagaaaatttgtcatgattctaagcaggggatgagagaattcatcgccgagattgtgagcctaggtcggcttagacaccgtaatattgtgcaattacttggctactgtcggcgtaaaggagagcttctattggtgtacgattacatgataaatggtagtctggacaacgacgtgttcgcgttcggcgcgttcgtgctggaggtcgtgtgcgggcggcgccccgtgcagccgcgcgcggccgccggcggcgagcggctcgtgctcgtggactgggtactgcgctcgtggcggtccggggagatcgccggcgcggtggacgcgaggctcggcggcggcttcgccgccggcgaggccgaggcgatgctgaagctcgccctgctgtgcacgcaccggctgcccgcggcgcgcccaggcatgcggcgcgtggtgcagtggctcgacggcggcggcggcgacgtcctggaccaactgtcgccggggcacatggacgtggccgctccggcgttcctgtgccacgacgatgacgacgacgacgacttcgtggcgatgtcgttcccgtcggcttccactgccacgtctccaacgacacgctttacaggctaa
More
|
||||||||||
| Protein seq | MHVATLLLLLPLDLAVANGAVDEFAYNGFAGAGDGELVLDGAASVTPDGLLRLTGGSGEKGHAFYARSLGFRNGSGGGGGVRSFTSTFVFGIMSSFTDLAGHGIAFAVSSTRDFSGAAAAEYLGLFNRATNGDPASGRVLAVELDTMYTPEFRDIDDNHVGVDVWVEYDAGDARLDVTLHQLTKPKPARPLLSVKPANLSAAFSDQMYVGFSSSTGSDDTSHYVLGWSFSLSGIAQDLDYAKLPSLPPVTATAASTKHMPVKIWLPVSLSVTVVAAIVMFLLFRRQRRAIYVELVEDWEVEFGPHRFAYKDLHKATKGFHDDMVLGVGGFGKVYKGVMPGSGIDVAIKKICHDSKQGMREFIAEIVSLGRLRHRNIVQLLGYCRRKGELLLVYDYMINGSLDNDVFAFGAFVLEVVCGRRPVQPRAAAGGERLVLVDWVLRSWRSGEIAGAVDARLGGGFAAGEAEAMLKLALLCTHRLPAARPGMRRVVQWLDGGGGDVLDQLSPGHMDVAAPAFLCHDDDDDDDFVAMSFPSASTATSPTTRFTG |
||||||||||
| Function | L-type lectin-domain containing receptor kinase SIT1 [UniProtKB/Swiss-Prot:Q6H7D2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0035500 | OsNaBo_03g0035500.01 | Chr03 | 34440529 | 34442563 | - | NAM | ||
| CDS seq | atgcatgttgcaacgcttttgctcctcctgccgctcgatctcgcggtcgccaatggcgccgtcgacgagttcgcctacaacgggttcgccggcgctggcgacggcgagctagtgcttgacggtgccgcctccgtcacgcccgacggcctcctgcggctaaccggcggcagcggcgagaagggccacgcgttctacgctcggtcgctcggcttccgcaacgggagcggcggcggcggcggcgtccggtccttcacgtcgacgttcgtgttcggcatcatgtcgtcgttcaccgacctcgccgggcacggcatcgcgttcgccgtctcctcgacgcgggacttctccggcgccgccgcggccgagtacctgggcctcttcaaccgcgccaccaacggcgacccggcgagcggccgcgtcctcgccgtggagctcgacacgatgtacacgccggagttccgcgacatcgacgacaaccacgtcggcgtcgacgtgtgggtggagtacgacgccggcgacgcgcgcctcgacgtcacgctgcaccagctcaccaagccaaagccggcgaggccactgctgtccgtgaagccggcgaacctctccgcggcgttctccgaccaaatgtacgtcggattctcgtcgtcgacgggctccgacgacacgtctcactacgttcttggctggagctttagcctgtccggcatagcccaagacctggactacgccaagttgccaagcctccctcctgtcacggccacggctgcgtcaaccaagcacatgcccgtgaaaatttggttacctgttagcctatcagtgacagtggtagccgctattgttatgttcttattgttcaggaggcagaggagggcaatttatgttgagctggtggaagattgggaggtcgagtttggaccgcatcgtttcgcttataaggacttacacaaggcgactaaaggatttcatgatgacatggttcttggcgttggaggattcgggaaggtgtacaaaggagttatgccggggtcaggtattgatgtcgcgattaagaaaatttgtcatgattctaagcaggggatgagagaattcatcgccgagattgtgagcctaggtcggcttagacaccgtaatattgtgcaattacttggctactgtcggcgtaaaggagagcttctattggtgtacgattacatgataaatggtagtctggacaacgacgtgttcgcgttcggcgcgttcgtgctggaggtcgtgtgcgggcggcgccccgtgcagccgcgcgcggccgccggcggcgagcggctcgtgctcgtggactgggtactgcgctcgtggcggtccggggagatcgccggcgcggtggacgcgaggctcggcggcggcttcgccgccggcgaggccgaggcgatgctgaagctcgccctgctgtgcacgcaccggctgcccgcggcgcgcccaggcatgcggcgcgtggtgcagtggctcgacggcggcggcggcgacgtcctggaccaactgtcgccggggcacatggacgtggccgctccggcgttcctgtgccacgacgatgacgacgacgacgacttcgtggcgatgtcgttcccgtcggcttccactgccacgtctccaacgacacgctttacaggctaa
More
|
|||||||
| Protein seq | MHVATLLLLLPLDLAVANGAVDEFAYNGFAGAGDGELVLDGAASVTPDGLLRLTGGSGEKGHAFYARSLGFRNGSGGGGGVRSFTSTFVFGIMSSFTDLAGHGIAFAVSSTRDFSGAAAAEYLGLFNRATNGDPASGRVLAVELDTMYTPEFRDIDDNHVGVDVWVEYDAGDARLDVTLHQLTKPKPARPLLSVKPANLSAAFSDQMYVGFSSSTGSDDTSHYVLGWSFSLSGIAQDLDYAKLPSLPPVTATAASTKHMPVKIWLPVSLSVTVVAAIVMFLLFRRQRRAIYVELVEDWEVEFGPHRFAYKDLHKATKGFHDDMVLGVGGFGKVYKGVMPGSGIDVAIKKICHDSKQGMREFIAEIVSLGRLRHRNIVQLLGYCRRKGELLLVYDYMINGSLDNDVFAFGAFVLEVVCGRRPVQPRAAAGGERLVLVDWVLRSWRSGEIAGAVDARLGGGFAAGEAEAMLKLALLCTHRLPAARPGMRRVVQWLDGGGGDVLDQLSPGHMDVAAPAFLCHDDDDDDDFVAMSFPSASTATSPTTRFTG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0772700 | RBH | 0.123868 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g56180 | RBH | 0.093437 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0772700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0036350 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0036020 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0036100 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0036400 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0035910 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0545400 | RBH | 0.1612985 | 0.087771 | 0.006243 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0035710 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0546100 | RBH | 0.183065 | 0.049277 | 0.0114365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0036190 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0036210 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0035860 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0035950 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0035900 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G035710 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0001800 | SBH | 0.630874 | 5.298018 | 0.378688 |
