Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0034730 | OGI:03088160 | 9/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:33888793-33892324 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccgccgtcgattccgactccccgccatcgcgtgcgacgccgcccacgccccgccatcgagccgccgtcgactcccgccttcagatcgacgccccatcacgccttcacatcgacgccaccggcaccccctcgcgccaccgtcgattctcgtctctccacctcgaccctcacactgatcgtcgtcgaatcccgcctccaaatcgatgtcgccgacgattcccgcctccagatgacaccgccagcgcccctcatgaggatcgccgtcgattcccgcctccagattgacgctgccaatgcccccacacaatgcagatcgttgtcatgcgccgtcaatccccgcccctcacgccgccatcgggactgctcacccacgcgcccccttctataccgcgacgccgccgtcgactccctcgtgccatctgctctccgttgcgccgccaccttagccctctccaccgcgaccgcgaacaaggtaatcatcgctcgatcccgttccttcattattacagtgtcatggctattatgtgtgtacgtgcataaacctgtgagaaaataaattattatgcgaatgtgtgggcagtgtggcaaagaaagttattatcttaatatgtttctctaatttagatagcaggcctattcttttgtcaagctagatagcgtaatatggaattgcggaagtacatgtcaaaaaataaactgagaggatattgattcttttgtttgttgagcttgcaaattagttgagaccttgcggccataagaaactaatgtttgatgaccaagtcgtgcttcactgtccagttctgctctatcatttaggattttcgttgcccagccaaatgaaaatgccattagtctccggcccagcgAaaaaaaatgccattagtctacccatgtttcctgttttctttaaactgatattgatgatagaggagactatgtgaatgctcttgggattatacagaactttgggtggctgttggataggataggataaggttcatttggtttatgtttagcgataggacgtaccggttcatttgggtgcctgttgaatgcctcgttcggtcaaaaaaatttccttcattgtgtgcatggatttaaaattcaaatgccagtagcaatatttattctgtctttttcctgaacctttcctagacagacgcatttctttcactgggaaatttgcagggtatattttcatcccacagggtcatgcatggtggatgtaagtatggattcagatcatggtggatgtatacatcaaatttaggttttggtaacttgtgttttttcttggttgagattcagttctgtagtgatctagaaaataattttggacaagcaataaataggaaatgagtacaagaagtatttgctagctctaaatgcacagtttgaccagttgtgtggtaaatcacctattaacactattactttgtcataaagaatatatttttcatttaaaaaaactaatcttatactgacatatattagtgtgcatggtccccttaaaagttaggtttaatcacaaaatgcgttaaggtggctgcaaggtctctgctgccctaaccgaatggccaggagtaaaatttggatctacgattcacctcagctaacttactatattttacaagactacaattacagtttctggtgcatttgccaagcactattcagcaggagattagtttttttttggtcctggtatatgtacatatgggataaatcatccatggtggatgcaccgaacagaaacacaccaacgtgcccacgtcaataacccaaccattgatattttggtgcttatttaggatgtttgcatgaattagtagtactatattgcaaccaggtcaacgctcttactgaaaacagccatttgaatggacagaagtctaacagtagtggtaatcaaatcgatcatcaaccttttgaggttatatatttttcatctgcttctgcataaaatacatcaaatgctagacttccgagtgaattttatcgaaatgcttgcaaaacatatgtgtgtgcagaaattggattaaaacaattattttttttctccacgagcttcacattcatgtgtcctacagaaacatactactaactgaagcatctgttcagtttgtcacgttaatgacaaaaaatcgaaatcaccttgctgagaattaatttgtttatgcaggcatttattacagtccatgatgcccacacgcaggacttgtcttcagcactgtccaggcattaattttcaacatgaccaggtaacgtcccctctagctttcgtacatgaaccaaaggtaacaacagttagttatatacttttcaggaaataattttgaacatcagcagatagacgtaaaattatataccctaagagcatatgatgacaatgtagctaactactaaatttggaccatgctgaatattataagatggaacatcttggtagttagtaatattatgctgaatagttagtggctttgattaatctctctgtcttcttgcatggagtagcacaattatataaccagctgggtacttggtaccttgttgccaccctaaaaaaatgatggcaccatagataaatttgcttgtgttaaaatgtattgccatcatagcgttgtaacttataccttgccttcatggaagatagtagtttattttaaatggaagacagtaatatgctttgttcaaattgatcttccatatgcataggtttataaaatgctatgatctagatgaataggtttcctgactattgttgttcacttaaaatagaaccaaatatgctgaaactattcatcactgaaaaaagtcaaacagaattctactgtcacactgcactttcatacgtttctattgatactggattttattctctttatgttcctttagtattttatcttatatatcagaattaaatagtttacaagaatatgagtgagaattatattattattgatccgtttctgctgtttgccactgtaccacctatgcatgcttgcctattctcttgaaccacatcgtatcgttcttaattttcctgaaatattgcatgcattctttggttttttcggactgctttctgtggtgcctagctgttggtagcgtgcaatattgatgatttacgcatcctgtgtattcgtagggtataatgaaatttgatctgaacatatgaaatttgacacatgcatttccatgatccgaaaagtttatctgcagatttaacaaaatattcatgttcattttacctttttcaactcatttacatgaacaaaattggagccatgtaaaagcctatatatttgctttcatacatatttttgccttaatagaatccaggatattttgccaaatattttgggagttaaattactactgctaagtgatgaatatgtctttataagcgtgtgcctcgtggtaggcaaacacactgtcttcaatatggtgcttctactgatatgcgttcgatagagaagttcatgtggcttcttgaggtgctctataaggaggaaggtaaccagtga
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| CDS seq | atgccgccgtcgattccgactccccgccatcgcgtgcgacgccgcccacgccccgccatcgagccgccgtcgactcccgccttcagatcgacgccccatcacgccttcacatcgacgccaccggcaccccctcgcgccaccgtcgattctcgtctctccacctcgaccctcacactgatcgtcgtcgaatcccgcctccaaatcgatgtcgccgacgattcccgcctccagatgacaccgccagcgcccctcatgaggatcgccgtcgattcccgcctccagattgacgctgccaatgcccccacacaatgcagatcgttgtcatgcgccgtcaatccccgcccctcacgccgccatcgggactgctcacccacgcgcccccttctataccgcgacgccgccgtcgactccctcgtgccatctgctctccgttgcgccgccaccttagccctctccaccgcgaccgcgaacaagtccatgatgcccacacgcaggacttgtcttcagcactgtccaggcattaattttcaacatgaccagcgtgtgcctcgtggtaggcaaacacactgtcttcaatatggtgcttctactgatatgcgttcgatagagaagttcatgtggcttcttgaggtgctctataaggaggaaggtaaccagtga
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| Protein seq | MPPSIPTPRHRVRRRPRPAIEPPSTPAFRSTPHHAFTSTPPAPPRATVDSRLSTSTLTLIVVESRLQIDVADDSRLQMTPPAPLMRIAVDSRLQIDAANAPTQCRSLSCAVNPRPSRRHRDCSPTRPLLYRDAAVDSLVPSALRCAATLALSTATANKSMMPTRRTCLQHCPGINFQHDQRVPRGRQTHCLQYGASTDMRSIEKFMWLLEVLYKEEGNQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0034730 | OsNaBo_03g0034730.01 | Chr03 | 33888793 | 33892324 | + | NAM | ||
| CDS seq | atgccgccgtcgattccgactccccgccatcgcgtgcgacgccgcccacgccccgccatcgagccgccgtcgactcccgccttcagatcgacgccccatcacgccttcacatcgacgccaccggcaccccctcgcgccaccgtcgattctcgtctctccacctcgaccctcacactgatcgtcgtcgaatcccgcctccaaatcgatgtcgccgacgattcccgcctccagatgacaccgccagcgcccctcatgaggatcgccgtcgattcccgcctccagattgacgctgccaatgcccccacacaatgcagatcgttgtcatgcgccgtcaatccccgcccctcacgccgccatcgggactgctcacccacgcgcccccttctataccgcgacgccgccgtcgactccctcgtgccatctgctctccgttgcgccgccaccttagccctctccaccgcgaccgcgaacaagtccatgatgcccacacgcaggacttgtcttcagcactgtccaggcattaattttcaacatgaccagcgtgtgcctcgtggtaggcaaacacactgtcttcaatatggtgcttctactgatatgcgttcgatagagaagttcatgtggcttcttgaggtgctctataaggaggaaggtaaccagtga
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| Protein seq | MPPSIPTPRHRVRRRPRPAIEPPSTPAFRSTPHHAFTSTPPAPPRATVDSRLSTSTLTLIVVESRLQIDVADDSRLQMTPPAPLMRIAVDSRLQIDAANAPTQCRSLSCAVNPRPSRRHRDCSPTRPLLYRDAAVDSLVPSALRCAATLALSTATANKSMMPTRRTCLQHCPGINFQHDQRVPRGRQTHCLQYGASTDMRSIEKFMWLLEVLYKEEGNQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0039580 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0035210 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0027090 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0035600 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0035120 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0536600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0536300 | RBH | 0 | 0 | 0.0235325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0026780 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0035070 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
