Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0032820 | OGI:03083660 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:32388318-32392068 | ||||||||
| Gene Symbol | LAS1, HDR, OsHDR, OsIspH, IspH, OsHDR1, HDR1, OsLAS1, LAS1/OsHMBPP, OsHMBPP, HMBPP, OsIspH1 | ||||||||||
| DNA seq | ggcctccaacaaccgcacggcggcgctgttcgacgagtggcacgcggcgcgggaccgctcggcgggaatgaaggagcaggacgtgctcaacgacatgaagcgccgcggcgcgctccgccgcctcggcgtccgcgcccgcgtcctcgacacggcgcgcttcagcggcttctgccaggacagccgcgacgcccgcgaggtcgccaccgtgcacgccaactgctgccggaccatgcgcgccaaggtcgccgacctcgcggccgtcctcgccgcggcgcggcggcgcctcgacggcgacggcgcgtcgccggtgctcaggtggccgccgcactcccagtgtgtcaagtcatgggagtgaggcgacacacacacacacagaatggtcgtgagctaacagctgctactactgattatttttttttgttcaaaagctgaagaacaatactactacagtatgaaagttgcagagagaaatggaattttataacaacatatgtggcatatcaagattggttctgaacttaatgttatacatagggaaccctgcatttcttgtacttgccatatatatacagggagtcctgcatttgagctctatcaaatagtactagctaacaaattgggtgatatttataccgaagaaagatacttctgcaacgttatttgagggggtcagaaagttatgacagccgatacagcaactgttcttcgtgtgataattgattacaacatttgcccccaacatactacgtaaatctcagcacatgccgtagtatgcgctcctaaaagcgtagcattcttcactactgtacagacatcgcttgtgcactggttctattaaccttcaccaagccatcagctaccgtgaccaaacctgatgaaaatttacgcggcctgcaaaacttcctggcgcttgatctcaaacaccttctgtaacgcatcctcaacaacctgcataagaaggaaagttatgcgtttttagttttatccagtgaccactgtgcagaaatatgtgcagaagacaagcaggctgcgtacaaaagaaaaacataatccaggttagccgtattaccttgtccggagttgaggcgccagaagtaactccgattgtgatagggccttctggtaaccagttctctttctcgacaagctcgccatgctgttaaaatgattcagatttcagtgataagactatactttcaattgatgtttctgcttattttgtcagaattctgcttattggttgccaaaaaaaaatctacactattctttcataatattcactaacaTttttttttgaagaaaaaagaatattcttgatgagatatgagtattacaacatacatttaacttgtagctgatcttgtttccaggtccaatcctttgttcactgtcaatccagtaagacggaattccactgagttctccaatttcttgcaaatgagaggtgttactggagttccatcctccaataaccagaataagatcaactttctccttcactagctggtacattgcatcttgtctttcctgatatatgaaggggaagggtgtcaccaatatatgaaccaaacatagactatgatctgattgtatccaaaaacaccacaaagtttgtaggaatatgctcgaacaaggttacttatgcagattacaatggagccataaatgacttaatagtacaacaaagtttacctgtgtggcatcacagatagtgttgaaggcaatgaagtggtcattgacattctcaactccaaacctacgcatcattgtcttctcaacaagcttccctgttagttatacagcattatagtcaaatttgatatttaaaaccaaattgtactgtatataataacacaaactaacaggcatgaagctaatggcaattagcatctgctagcatacgaaccaatttcttcagtttctcctttaagcattgttgtttgattggcaatgccaactttcactaagtcaacatcaggatcaaatcctggagaaacagcatttttgaatttctgcagttgttgataaaacattcgattagacattggcatttctttccaacataacagggcaaaaaaaaaaaaaagatgattcaagaaaggctttacctcaaggaactcctcttttgtggagctagaaccatcaagttggccaccaagtatataatcacatacatagctagcctgttacaattgataatattttgttatttgagccaaataatgtattcaacatgaaagtcaatgcaataggaaaaaattaaatgcatcaaacatacctctgctatgttcttaacaatgatgtatgtccctgcaaaggaagcagtggcaacagtttcttcatgggagtattttccatgaataatagaagtgtagtcacccttcttgtgcttttcaaccatgttccacacctatatatagtagtggagttcatcaaccagatatacctttgatttctgattatctcagagcgacatagaaaggatcaggtgatcttcaaaagggaaacccacctttgaaacccaagggcacgttgtatcgactatctgcaccttcttctcattcagcgtgtacatctcctccacggccgctccaaatgcaggcaatacgacaacatccccttgctcgacaacatcgaaatccttaatacctgcatcaacaggaatgttttggacgcccatgtcctccaatcgctgcaaacacaatagcaggagtcgaattcaagtcacttccaattccagagtccgttgtcatgcgaagcacagatgattgaatactcttaagcagcagataaaaagaaactagttaattgggtaatcaagggggtataaaagtctaaaacgcagaatctggtggccactcttcgctgtgaacactttctcaactagaaattggtaggattttactccaaatctcatttgcaccaaatagatcattttaccacgcacacgcagacgctaatctatcccctcatacgcaacaaactcagttcgtggaaggaggcgggcattcacgaaggggaaaaaccacaaaattcatccccatggagacgagtcgacgcctgaatcaaacgaaatggataggggaggatttcataatcaccttgttgacggtggggttgtggatgatctcgttggtgagccagatgcgatcgtcggggaactgcttgcgcgcctcgtaggcgatctgcacggcgcgctcgacgccccagcagaagccgtacgcctccgccagcttcaccgtcacggggccccacgtgtgctggttcccgttctccttgagcgtcttgatcacgtcgcctgagaccaagaacacgccgccgccggtgagCccccaatcaagaagagaaaaaaaaaagaaagggaaaggagaggaaatcatactggtgtactcctggctcatgagctcgagcgtctccttcttgtggccgaagcccttgcggttgtagttgtcgctgcgggtgaggttgtggcggaactgcttcttgtcgaagtcggcgtcgagcgacgcggaggcggacggggacgacgctgccgaggagtcgcaccgcacggacgacggggcgcgcctggcacggcggctcggcgaggccgccggcgagaggagggccgaccggagctgcgtggtgatggtcgccatcgccgcccgcgccgccggatgccggtggtggtggtggtggtggtgccaagtgccgcggggagctctggagtggatgggtgtgggtgcgtcggattcggagttgggatctcccc
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| CDS seq | atggcgaccatcaccacgcagctccggtcggccctcctctcgccggcggcctcgccgagccgccgtgccaggcgcgccccgtcgtccgtgcggtgcgactcctcggcagcgtcgtccccgtccgcctccgcgtcgctcgacgccgacttcgacaagaagcagttccgccacaacctcacccgcagcgacaactacaaccgcaagggcttcggccacaagaaggagacgctcgagctcatgagccaggagtacaccagcgacgtgatcaagacgctcaaggagaacgggaaccagcacacgtggggccccgtgacggtgaagctggcggaggcgtacggcttctgctggggcgtcgagcgcgccgtgcagatcgcctacgaggcgcgcaagcagttccccgacgatcgcatctggctcaccaacgagatcatccacaaccccaccgtcaacaagcgattggaggacatgggcgtccaaaacattcctgttgatgcaggtattaaggatttcgatgttgtcgagcaaggggatgttgtcgtattgcctgcatttggagcggccgtggaggagatgtacacgctgaatgagaagaaggtgcagatagtcgatacaacgtgcccttgggtttcaaaggtgtggaacatggttgaaaagcacaagaagggtgactacacttctattattcatggaaaatactcccatgaagaaactgttgccactgcttcctttgcagggacatacatcattgttaagaacatagcagaggctagctatgtatgtgattatatacttggtggccaacttgatggttctagctccacaaaagaggagttccttgagaaattcaaaaatgctgtttctccaggatttgatcctgatgttgacttagtgaaagttggcattgccaatcaaacaacaatgcttaaaggagaaactgaagaaattgggaagcttgttgagaagacaatgatgcgtaggtttggagttgagaatgtcaatgaccacttcattgccttcaacactatctgtgatgccacacaggaaagacaagatgcaatgtaccagctagtgaaggagaaagttgatcttattctggttattggaggatggaactccagtaacacctctcatttgcaagaaattggagaactcagtggaattccgtcttactggattgacagtgaacaaaggattggacctggaaacaagatcagctacaagttaaatcatggcgagcttgtcgagaaagagaactggttaccagaaggccctatcacaatcggagttacttctggcgcctcaactccggacaaggttgttgaggatgcgttacagaaggtgtttgagatcaagcgccaggaagttttgcaggccgcgtaa
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| Protein seq | MATITTQLRSALLSPAASPSRRARRAPSSVRCDSSAASSPSASASLDADFDKKQFRHNLTRSDNYNRKGFGHKKETLELMSQEYTSDVIKTLKENGNQHTWGPVTVKLAEAYGFCWGVERAVQIAYEARKQFPDDRIWLTNEIIHNPTVNKRLEDMGVQNIPVDAGIKDFDVVEQGDVVVLPAFGAAVEEMYTLNEKKVQIVDTTCPWVSKVWNMVEKHKKGDYTSIIHGKYSHEETVATASFAGTYIIVKNIAEASYVCDYILGGQLDGSSSTKEEFLEKFKNAVSPGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRRFGVENVNDHFIAFNTICDATQERQDAMYQLVKEKVDLILVIGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISYKLNHGELVEKENWLPEGPITIGVTSGASTPDKVVEDALQKVFEIKRQEVLQAA |
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| Function | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [UniProtKB/Swiss-Prot:Q6AVG6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0032820 | OsNaBo_03g0032820.01 | Chr03 | 32388318 | 32392068 | - | NAM | ||
| CDS seq | atggcgaccatcaccacgcagctccggtcggccctcctctcgccggcggcctcgccgagccgccgtgccaggcgcgccccgtcgtccgtgcggtgcgactcctcggcagcgtcgtccccgtccgcctccgcgtcgctcgacgccgacttcgacaagaagcagttccgccacaacctcacccgcagcgacaactacaaccgcaagggcttcggccacaagaaggagacgctcgagctcatgagccaggagtacaccagcgacgtgatcaagacgctcaaggagaacgggaaccagcacacgtggggccccgtgacggtgaagctggcggaggcgtacggcttctgctggggcgtcgagcgcgccgtgcagatcgcctacgaggcgcgcaagcagttccccgacgatcgcatctggctcaccaacgagatcatccacaaccccaccgtcaacaagcgattggaggacatgggcgtccaaaacattcctgttgatgcaggtattaaggatttcgatgttgtcgagcaaggggatgttgtcgtattgcctgcatttggagcggccgtggaggagatgtacacgctgaatgagaagaaggtgcagatagtcgatacaacgtgcccttgggtttcaaaggtgtggaacatggttgaaaagcacaagaagggtgactacacttctattattcatggaaaatactcccatgaagaaactgttgccactgcttcctttgcagggacatacatcattgttaagaacatagcagaggctagctatgtatgtgattatatacttggtggccaacttgatggttctagctccacaaaagaggagttccttgagaaattcaaaaatgctgtttctccaggatttgatcctgatgttgacttagtgaaagttggcattgccaatcaaacaacaatgcttaaaggagaaactgaagaaattgggaagcttgttgagaagacaatgatgcgtaggtttggagttgagaatgtcaatgaccacttcattgccttcaacactatctgtgatgccacacaggaaagacaagatgcaatgtaccagctagtgaaggagaaagttgatcttattctggttattggaggatggaactccagtaacacctctcatttgcaagaaattggagaactcagtggaattccgtcttactggattgacagtgaacaaaggattggacctggaaacaagatcagctacaagttaaatcatggcgagcttgtcgagaaagagaactggttaccagaaggccctatcacaatcggagttacttctggcgcctcaactccggacaaggttgttgaggatgcgttacagaaggtgtttgagatcaagcgccaggaagttttgcaggccgcgtaa
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| Protein seq | MATITTQLRSALLSPAASPSRRARRAPSSVRCDSSAASSPSASASLDADFDKKQFRHNLTRSDNYNRKGFGHKKETLELMSQEYTSDVIKTLKENGNQHTWGPVTVKLAEAYGFCWGVERAVQIAYEARKQFPDDRIWLTNEIIHNPTVNKRLEDMGVQNIPVDAGIKDFDVVEQGDVVVLPAFGAAVEEMYTLNEKKVQIVDTTCPWVSKVWNMVEKHKKGDYTSIIHGKYSHEETVATASFAGTYIIVKNIAEASYVCDYILGGQLDGSSSTKEEFLEKFKNAVSPGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRRFGVENVNDHFIAFNTICDATQERQDAMYQLVKEKVDLILVIGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISYKLNHGELVEKENWLPEGPITIGVTSGASTPDKVVEDALQKVFEIKRQEVLQAA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 20.877096 | 18.853081 | 32.927567 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0731900 | RBH | 48.052380 | 44.846970 | 34.943134 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g52170 | RBH | 24.604975 | 23.485039 | 7.131814 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0731900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0033550 | RBH | 8.395485 | 14.949648 | 11.605914 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0033250 | RBH | 10.437729 | 2.492062 | 12.977319 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0033320 | RBH | 16.989727 | 14.067498 | 27.965740 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0033640 | RBH | 2.824993 | 0.292568 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0033250 | RBH | 185.344910 | 12.991096 | 45.543995 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0511000 | SBH | 0.0246055 | 10.6825195 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0033020 | RBH | 3.946154 | 0.547758 | 5.351815 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0511700 | RBH | 113.967163 | 22.2449235 | 28.020237 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0033490 | RBH | 8.979062 | 0.281389 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0033480 | RBH | 16.585140 | 2.544034 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0033240 | SBH | 120.533211 | 15.371177 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0033210 | RBH | 8.239456 | 1.206814 | 10.026856 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0033220 | RBH | 5.188329 | 0.493466 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G032980 | RBH | 5.663469 | 1.666888 | 11.913931 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0032830 | RBH | 0.0 | 0.000000 | 0.0 |
