Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0031070 | OGI:03080140 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:30889193-30890965 | ||||||||
| Gene Symbol | PPR | ||||||||||
| DNA seq | tcagacggacccaagctacagtgtcagtcatcttatttacatttctgttgttgtttcttattaattcttagcattgtgagagtggtaatataatagaattagttatagcgtacgaatctactatgaagatagtgatagcaagctttcatcacaggcttatctagataagcttcgatggttacttaaggagcatctacgctttattttaacaatactttggctctctcgttcctccgtattgtatgggttaagaagataggctgagttcttttttgaaagttcccaacttatctctcttattatccacttacatgctttctaaactaataaatagtgtatttTATAtatatatatatatatatatatatatatatatataactttaaaagatattattaatttatcttttattaaaaaataaaagttaattaatcatacgctaatgagttgctctatctatgtgcacgagagattagctccaaccctaagtaacaacacagccttatgcagtttaggatagttggtatttcttcgttttatattataagatgatttgattttttttcaaactattttaagtatgattaagtttataggaaaaatattagcgatatctacaactccaattagttttactaaaccttttatattataattgttttgtattaaaactatttctatgctttttcataaattaatagaactttagttaggaaaaaaaatcaaaaacgttttctagtatgaaaggaagggaggagtacatgtgtgatgggcaggaggaagacggtgtcctatgggcaaaatttgctacaggatatccaaaaaaacgtgtaattagttgaaagacactgcaaaaacgcttatttgctatagggcaccaaaaaaactagtaattatctgctggacacccgcaggattattttattatatccggagaaattggagagaaaaacaactgtgtaagtacgattttacccttcaattttttttctttttcttttttcactatccttctctactcctccttccttattcttctctctctcattctttctctctctctctttccgaacccgctgatgaccgcgctccagctgaccacattgggcgcgaccgtgccgccgatctgctccatctgggcgagcacgtccaatgcctcgtcgcacagcccagctgtagcgtagctggtgatcagggtattccatgtcacgatgttcttctccgtcgcgtccctgaaagctttcttggcgttgtccatctccccgagcttgccgtacatgcacaccagcgagttggtgatgaacacgtagccatggatgacgcccttcatgacgccgcagccgtgtgtcgcctcccctttggccaatgcaaggtcgccggcataagggcacgccgagagcgccacggccatggactcggcgttcccctcacagccgctcctattcatttcaccgaacagttgaagaacatcagcacgagagcgaggtccccgcttgaacggccgaggtgggcgcggaggaggcgattccatgggatggcgctggtgatcggagggtgatggtggatcggttggtcgccggccaccgtcccgccgtgtccgcaccacatggccgacctcgcctgggcacccatccacaccgccgctgcgctgctcagcccggggacttcgccctcgtccgccgcgtcggcgccggggcgcctcgaaggagaacgcggcgtcgccaccgcatgtccagccgccgattcaggaagacttccagtcgagtgcctgca
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| CDS seq | atgggtgcccaggcgaggagcggctgtgaggggaacgccgagtccatggccgtggcgctctcggcgtgcccttatgccggcgaccttgcattggccaaaggggaggcgacacacggctgcggcgtcatgaagggcgtcatccatggctacgtgttcatcaccaactcgctggtgtgcatgtacggcaagctcggggagatggacaacgccaagaaagctttcagggacgcgacggagaagaacatcgtgacatggaataccctgatcaccagctacgctacagctgggctgtgcgacgaggcattggaccttgggtccgtctga |
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| Protein seq | MGAQARSGCEGNAESMAVALSACPYAGDLALAKGEATHGCGVMKGVIHGYVFITNSLVCMYGKLGEMDNAKKAFRDATEKNIVTWNTLITSYATAGLCDEALDLGSV |
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| Function | Putative pentatricopeptide repeat-containing protein At1g68930 [UniProtKB/Swiss-Prot:Q9CAA8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0031070 | OsNaBo_03g0031070.01 | Chr03 | 30889193 | 30890965 | - | NAM | ||
| CDS seq | atgggtgcccaggcgaggagcggctgtgaggggaacgccgagtccatggccgtggcgctctcggcgtgcccttatgccggcgaccttgcattggccaaaggggaggcgacacacggctgcggcgtcatgaagggcgtcatccatggctacgtgttcatcaccaactcgctggtgtgcatgtacggcaagctcggggagatggacaacgccaagaaagctttcagggacgcgacggagaagaacatcgtgacatggaataccctgatcaccagctacgctacagctgggctgtgcgacgaggcattggaccttgggtccgtctga
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| Protein seq | MGAQARSGCEGNAESMAVALSACPYAGDLALAKGEATHGCGVMKGVIHGYVFITNSLVCMYGKLGEMDNAKKAFRDATEKNIVTWNTLITSYATAGLCDEALDLGSV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0781100 | SBH | 0.783238 | 0.203723 | 0.606912 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g49930 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0781100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0031760 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0031470 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0031560 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0031640 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0031360 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0490400 | RBH | 0 | 0.1360005 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0031030 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0490200 | RBH | 0 | 0.1089135 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0031420 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0031460 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0031420 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0031210 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0031230 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G031200 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0006680 | SBH | 0.784220 | 0.000000 | 1.998016 |
