Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0029430 | OGI:03076650 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:29356627-29364343 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ccatcgcctcgtctctccgcttctcgcaagcaaaacccacatcgcccattcgcccccatcccattctgctcgccgtgctcgctgagctccatggagaagaaggataagggaaggcaccgcggccgcgacggcggaggcggaggcggcggcggtggtggtggtggtggtggtggtggtgtggatcgcggcggtggagggagcggaggaggagggccgggaatggggcggcgcgggagcgatgcgcgtggccagcaggcggaggcggcggccgcggcaatcagcggcatcgccacccgcctcggcttcgggtgcaccatcagtacgtgctaagcggccgctgtccgctgctccccgatcgtttctgcttgggctgattctgctctccggaagggatctctaatggtgggttgggtggtgttgttcgtcgtgcgtgcgtgcgtgtgtgtttgcagatgtcggcggcgggatgccaccgcagatggagttcctgatggcgtgtacggacggcgacgtcgcgcgcctcaagggtgagatcctacggctctaccccgcgcccgtcttactcccgaactgctcgtgcttcttcctgggataggggtttggttagggttttgagggcttttttttttagcttccgtgtggtggtgaactggtgatcgggaacTttttttcagcattttctgtgccggctttgttgggggatattctactcaaatgtgttctcccatctttttgtgcatttgtgtaaacaattggatgagatggcttttagcctcatgcatcgtttctggttccgttacgatatgatcgtgtataccccgatcgtgcgtgttgttgatagaagtgtatgtgtgtttaatgcggcggagggttttcctgtctatttttggttcaaattggtactaatctagtaatctggatatgaatttgtttgtttgccattattcttaatagggattaataattactaataatacttctctttatgatgccatatttctgttagaggtctcctcctcttggttttgttttcttttgattaataattactaatactacttatctttatgatgccatatttctgtaagagatctcttccacttGgttttgttttcttttctaagtgcttagatgtgattttcgtgaggtacttgtgtctccatttctctagaactttgatcttgttttatgcacatccacacacaaaaaaaaacaacttctgcatgaactagaattacaatttgtgcaaatttgcgccttacttttcttttgaaactttcggtattgaagaggtggttgatagcatggatgaggatgatcggcaatcgctcgcctctgtgaggatggaggggtatgagccactgtttgaggcagcaagctcgggaaaaattgatctctgcaagtacttggtggaggagcttgggttcgatgtcaatgccgaagctaatcatgattccggtatgtgcctttccaggttattgcattgttttattatgcttagtgcatctcccgtgagcaatgcaattgtaatgggagctgttgtatgtgaggaggttagtcttgatagggtcaggaactgtctttaccttatcatggagacattaactatagtgctgacatgctgctatctgaattggcacaccaatgtaacactgctatgtgaataaatccgtttagtactataatttgattcttaagtgttgtttcttgactagtcaccttttttaatgaaaacaaacaattctgtggcacctttgggacgtatgaatgtatgatgtcttgtgaggtaggattttctgagggagtactgcaagaatttccctgaagaaaactcaattcctgcactaatctagtaatttgttttttgtaacgggccatagataatataagaaaacatcatccaagaaagaatcacaatagcaaagtgttggtgatatgcctttttattcttatttgaaggattatctccttcagcctttctttttatattgcttttgcctactcttgattggtacagttgtgtctagacaatgcatgcagttcactttgtgaagctcatctattatgcacttgatttttcttctagttccttttgcgtggtataatcatgccatcaaattttggttctaagaaaatgggaaatgggagttttgtatagttttaactatactattatccttgttgatatgaacttattaagtggtgtttctgaatgattccattgtttaatattgcatgtcatataaatacagtctgagctataagtatttcatgaagtgctcctttgcatatttggaattgtagcagctaatatttgtgcatttgcaaagctgttataccacaacactacctgtatcgttttgttggagttatctgattaaatttcttgtttgtaatgcccttgctaggtatgacacctttgttttgcgctgtgttgcatggacaagagattactgtgaagtattttcttgacaaaggtgctgatccgaataagaaagatgcagcaggctttgctcctcttcatgaagctgcaaaaaaaggtaaggtatcacttcttttacatctgtgcatgtgtactacctttgtcatgtttatggtatgcgaagcttgcattgtataactttccctacaaaagctaaatgtaaaatctataatccacttatgtgtcttatagtaggggaaaacagctcaagagacaaatccacttatctgcctccttttatgtaaatcttgccattttgttaggtttgtgcttgcttaggtggttttggtcaatactcgcaataatacttctgatttgtgacctgagaacacactagttctgaaacatacactttacttttgattcaatatgttaagtcagttctggaatgaacaattccaaaattaagaatgtctacaaaaaaaattattcttcactgtaacacaattccatgttgcccccccaacacttgttctcagggcacgttggaatagcacgactgttgttatctaaaggagctagtgttgatgtatcttcttctaaagggacacctcttcatgttgctgcctctaatggaaaatctagcactgtgcagattttattagagcaccgcgcaaatgtaagtaccataatttcttttatttcatctttccatgtcgtttggttgaattcaaggctcaatttgtgatggtaccaaccgcctaatgtgttggtttagttcttggcaaaatatggaccaagTttttttttgctcctgctgcaccttttttgtggatatgtagattcaacgatcacaagttgatgcAaaaagctttcgaaacagggtccaagtgttctatgtacctgctttggtttgctactgtcttaccttctgacttcgttgctacattgttcttgtgtttgtcgtttatgatgcccatatgtttcctagtatgggctgttctaggtcatgctggttgtaaatagtcgttaggcttcttatgatgctttttagatagtttattcatgatttcatgccttgcaatttgcaaatgaatgtgttgcattttccttgtgccttacttccatattgtgttatgaactgTttgttcttagtttcaggaatttatacagaagatatttctaatttctggatttgtattgacttgctccttttacctgctaattatatgcatttacttgggaataactttggtttctaaaaatgcagccaaacgtgatattaccagattgttatacaccattgaccgcagttctttctgccactcctgaaatagtgaatgaatctgagtgtttgaagtgcatgaaactccttgtgaaggtttgatacccaatcgatcctctctgtatctctatttccaaagtctaacgtgaaaaaaagtatatctatactcctttaaaagactccaatgatggtgctgaagggtgaatctgcattcagcccttcacctatccccactatctcctgacttgtggaaccatcaaaactgtgaccaaagtaatgtgacctaccgtgttacacataaaaaaaacaataataaagtgagttatatacagagaaaggggaagataccaaattccaaccattatgtgatttcttgaatatttgaaattgtaatgatgtgaTtttttttttataatccatagctacgcacgggcattcgctactaaattcctatgttttatgtgagatattatgtcaacaacatattgttgtgtcatgtaacatttatctgcaggctggtgctatttataatcttgcaactcctgatactccattgaagatagcaactagaaatggcttaactgagtgtgttgcatacttgctggagatcaccacagttaaactaagtgaacatgtgagtaactcttgctaatttggtgcttttactttgtttttctcctaggacttgttgaacctataaacttgtggcaattattttctttcaaatgtaaaggaaagctctctctctctctatgtgtgtgtgtgtgtgtgtttgtgtctatccttatttgtactgttttattggattttttttctttgatctgttggaaatgccttccaaaacccaacattagcaccagtcaccagtagtctggtagaacaaaactataccagagaggaacaaaacgaaagcttttggagtttgtttgaatttgccttgttggcaccctgcgaaggacgagataatttgcatcccatgtttttctctttatgagaatgagaatacattatccaggtgtagagctttaccagttcaaatggtacattattactttaccaaccatctagacgtggattgaatcggccagggtcttataattgataacattacaagatttaatctgctgttttcaacagaactgttatcctgtactggtttttatgcaatacaaaataaatggtggaaGgggacaatggtagaaacaagtttaggaatgggacgagtttatgattggacgtttgtgcaactaacctatctgtgtttgcaaaataaggaagtatttttccttctccaaattctggtatttcctccaaaacatgtagaagggggtgaatcagacatgtaccacctctttagtctgtttgggacatcgacacaaatttgcaatacagatgtttgataattaccttttctaatcctatattaattattaaaatataacggcatgagagtgttttaatgaaaaatttaatgtcattttcaattatcaaatcttaatattgcttatgtattaatgaactaagattttgacgtttacctgaacatattctaaatctaaaacatcgtctatttgaaaacaggaggaattattttttagaactagaggacattgcaccttgaaactactttgttggtacataatacatctgtgttcttcactacatgtatgtaatgcaagcaactaaaggagatgatttattctctgtgctttcgtttgtaatcaccatgattcagttcattgttagaatgttagtggtattggtcgtaggaacactgcatctagtattctgtcaatttacggattttcagcttctatgttttttctcttctatcactacttatgttttcctaatgatttaggacaaaggaagtgatggagacagaaaatctaagctgaaattacatggtggaaaagcatttgaggagggggactatgctggtgcaatcatattttacactgaggtatataaatgtgcattatatgattttacttcctttttgacttattactgctaagctgaaattgcatagtggaaaatcaataggaatgtgcagctgcccatgctatcctcattattgctaaatgctaatacatgatctgttagcggacattagctgaagacagaacaaaaagattatcgcaatttacaaactcagttacactggttccagttccttgcatctattactgctcagaccactataactattgtttaacttacgcagtttttatacaagtaattttatagTtttttttctcaaaaagataatacacatttattccattgttatagctggttcactgcaaaaaaagttaaatgtaaactttgtgttcagcatttacactttcaagcctacagttattgattcttacgtactgttaaaaataaaagctctaatccaagaaatgccattgacaaacacaacttcctgaaaatgccattctacaagcgtctttatcccagaaatgccatcgccgttaggtttctgttagtagccctccttttaagtgctatAaaaagaccattttacccctacgagttgttgaaagatgattaaaacttatactctttcagtcaacgtacaataatttaggctgcgttctatttctccaacttcaatttcaacttccttgttttccataagcatgcttttcaaacttcaactttaacttccttgatttccattagtcAaaaatggtctttttatagcacttaacggagggatgctaatggaaacctaacggcgatggcatttctgggacaaaagtgctttgtatgatggcatttctaggaagttaggtttgttgatggcatttcttggattggggcgcttatcaatggcattttttagattttcAaaaaaaaaaaaaaccttgcaatgatgatcacacttagtcatggaacatccatggcccttgacactcttctgtgaatacagtcagcgtggagggtagtcaagtgcactctggcaatgggaaaattgacatgttctttacaaatataatttcttcaataatccaagccctaactataagcaacagagattatcacacgagaacccatctccacacatgcaacatcacagaagcatgacagtctctgcatcccagttgacacctaggatactatcatcacttctattgtctaggtactatggctgtgttaacaaggaagtggtgcagcgcaggaggcttatcacagtttggtatgatgcaggcaatgaaacttgatcctgcagatgccacactgtattcaaacaggagcctttgccatctgagaagtggtgcagcgcaggaggctttgctggatgctaatgattgcataaaactcaagccagagtggactaaaggtcactatcgcaaaggatgtgcccacatggcactcaaggtcagaaaagaaaaaaaaatccaagtttttcgttttgtgatacatcatttccctgtcattatcttatctatgtttttatattccagcaatacgaagaagcttgtactgcattcatggctggaacaaagctcaatcctttaaacgatgaaatgcaggatgcattttggtaatctttgtacctattttactttataacacagattttcttaaatgacctccgacacggttccatgaatcaaaatatgctaattcatgaattttttttcagttacttgtatgctgcgtgatatgtcagtgattatgcctctgactgaaaccaacccatatgttgacatttgcagggaggcagctaaaggaatgatgtatgaacatatggctggaaagcgcgtcagctcggttgattagaggtcatcggcgtgttcgtgctctgttctgtttcttttggacccgaatgtcagcttggatggtttaatttcgtgttagtacttgtgtctatatgatgtttctcgttggttaaggacacagcgaattgatggtggaacaaggctcgattccgcgtggaaccgatgttttcacagaacatttcttgaaacagtacttaacgttacctgtttgcatga
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| CDS seq | atggagaagaaggataagggaaggcaccgcggccgcgacggcggaggcggaggcggcggcggtggtggtggtggtggtggtggtggtgtggatcgcggcggtggagggagcggaggaggagggccgggaatggggcggcgcgggagcgatgcgcgtggccagcaggcggaggcggcggccgcggcaatcagcggcatcgccacccgcctcggcttcgggtgcaccatcaatgtcggcggcgggatgccaccgcagatggagttcctgatggcgtgtacggacggcgacgtcgcgcgcctcaaggaggtggttgatagcatggatgaggatgatcggcaatcgctcgcctctgtgaggatggaggggtatgagccactgtttgaggcagcaagctcgggaaaaattgatctctgcaagtacttggtggaggagcttgggttcgatgtcaatgccgaagctaatcatgattccggtatgacacctttgttttgcgctgtgttgcatggacaagagattactgtgaagtattttcttgacaaaggtgctgatccgaataagaaagatgcagcaggctttgctcctcttcatgaagctgcaaaaaaagggcacgttggaatagcacgactgttgttatctaaaggagctagtgttgatgtatcttcttctaaagggacacctcttcatgttgctgcctctaatggaaaatctagcactgtgcagattttattagagcaccgcgcaaatattcaacgatcacaagttgatgcAaaaagctttcgaaacagggtccaagtgttctatgtacctgctttgccaaacgtgatattaccagattgttatacaccattgaccgcagttctttctgccactcctgaaatagtgaatgaatctgagtgtttgaagtgcatgaaactccttgtgaaggctggtgctatttataatcttgcaactcctgatactccattgaagatagcaactagaaatggcttaactgagtgtgttgcatacttgctggagatcaccacagttaaactaagtgaacatgacaaaggaagtgatggagacagaaaatctaagctgaaattacatggtggaaaagcatttgaggagggggactatgctggtgcaatcatattttacactgaggcaatgaaacttgatcctgcagatgccacactgtattcaaacaggagcctttgccatctgagaagtggtgcagcgcaggaggctttgctggatgctaatgattgcataaaactcaagccagagtggactaaaggtcactatcgcaaaggatgtgcccacatggcactcaagcaatacgaagaagcttgtactgcattcatggctggaacaaagctcaatcctttaaacgatgaaatgcaggatgcattttgggaggcagctaaaggaatgatgtatgaacatatggctggaaagcgcgtcagctcggttgattag
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| Protein seq | MEKKDKGRHRGRDGGGGGGGGGGGGGGGGVDRGGGGSGGGGPGMGRRGSDARGQQAEAAAAAISGIATRLGFGCTINVGGGMPPQMEFLMACTDGDVARLKEVVDSMDEDDRQSLASVRMEGYEPLFEAASSGKIDLCKYLVEELGFDVNAEANHDSGMTPLFCAVLHGQEITVKYFLDKGADPNKKDAAGFAPLHEAAKKGHVGIARLLLSKGASVDVSSSKGTPLHVAASNGKSSTVQILLEHRANIQRSQVDAKSFRNRVQVFYVPALPNVILPDCYTPLTAVLSATPEIVNESECLKCMKLLVKAGAIYNLATPDTPLKIATRNGLTECVAYLLEITTVKLSEHDKGSDGDRKSKLKLHGGKAFEEGDYAGAIIFYTEAMKLDPADATLYSNRSLCHLRSGAAQEALLDANDCIKLKPEWTKGHYRKGCAHMALKQYEEACTAFMAGTKLNPLNDEMQDAFWEAAKGMMYEHMAGKRVSSVD |
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| Function | Hsp70-Hsp90 organizing protein [UniProtKB/Swiss-Prot:F8RP11] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0029430 | OsNaBo_03g0029430.01 | Chr03 | 29356717 | 29364343 | + | NAM | ||
| CDS seq | atggagaagaaggataagggaaggcaccgcggccgcgacggcggaggcggaggcggcggcggtggtggtggtggtggtggtggtggtgtggatcgcggcggtggagggagcggaggaggagggccgggaatggggcggcgcgggagcgatgcgcgtggccagcaggcggaggcggcggccgcggcaatcagcggcatcgccacccgcctcggcttcgggtgcaccatcaatgtcggcggcgggatgccaccgcagatggagttcctgatggcgtgtacggacggcgacgtcgcgcgcctcaaggaggtggttgatagcatggatgaggatgatcggcaatcgctcgcctctgtgaggatggaggggtatgagccactgtttgaggcagcaagctcgggaaaaattgatctctgcaagtacttggtggaggagcttgggttcgatgtcaatgccgaagctaatcatgattccggtatgacacctttgttttgcgctgtgttgcatggacaagagattactgtgaagtattttcttgacaaaggtgctgatccgaataagaaagatgcagcaggctttgctcctcttcatgaagctgcaaaaaaagggcacgttggaatagcacgactgttgttatctaaaggagctagtgttgatgtatcttcttctaaagggacacctcttcatgttgctgcctctaatggaaaatctagcactgtgcagattttattagagcaccgcgcaaatattcaacgatcacaagttgatgcAaaaagctttcgaaacagggtccaagtgttctatgtacctgctttgccaaacgtgatattaccagattgttatacaccattgaccgcagttctttctgccactcctgaaatagtgaatgaatctgagtgtttgaagtgcatgaaactccttgtgaaggctggtgctatttataatcttgcaactcctgatactccattgaagatagcaactagaaatggcttaactgagtgtgttgcatacttgctggagatcaccacagttaaactaagtgaacatgacaaaggaagtgatggagacagaaaatctaagctgaaattacatggtggaaaagcatttgaggagggggactatgctggtgcaatcatattttacactgaggcaatgaaacttgatcctgcagatgccacactgtattcaaacaggagcctttgccatctgagaagtggtgcagcgcaggaggctttgctggatgctaatgattgcataaaactcaagccagagtggactaaaggtcactatcgcaaaggatgtgcccacatggcactcaagcaatacgaagaagcttgtactgcattcatggctggaacaaagctcaatcctttaaacgatgaaatgcaggatgcattttgggaggcagctaaaggaatgatgtatgaacatatggctggaaagcgcgtcagctcggttgattag
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| Protein seq | MEKKDKGRHRGRDGGGGGGGGGGGGGGGGVDRGGGGSGGGGPGMGRRGSDARGQQAEAAAAAISGIATRLGFGCTINVGGGMPPQMEFLMACTDGDVARLKEVVDSMDEDDRQSLASVRMEGYEPLFEAASSGKIDLCKYLVEELGFDVNAEANHDSGMTPLFCAVLHGQEITVKYFLDKGADPNKKDAAGFAPLHEAAKKGHVGIARLLLSKGASVDVSSSKGTPLHVAASNGKSSTVQILLEHRANIQRSQVDAKSFRNRVQVFYVPALPNVILPDCYTPLTAVLSATPEIVNESECLKCMKLLVKAGAIYNLATPDTPLKIATRNGLTECVAYLLEITTVKLSEHDKGSDGDRKSKLKLHGGKAFEEGDYAGAIIFYTEAMKLDPADATLYSNRSLCHLRSGAAQEALLDANDCIKLKPEWTKGHYRKGCAHMALKQYEEACTAFMAGTKLNPLNDEMQDAFWEAAKGMMYEHMAGKRVSSVD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0029430 | OsNaBo_03g0029430.02 | Chr03 | 29356627 | 29364337 | + | IsoSeq | ||
| CDS seq | atgcgcgtggccagcaggcggaggcggcggccgcggcaatcagcggcatcgccacccgcctcggcttcgggtgcaccatcaatgtcggcggcgggatgccaccgcagatggagt |
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| Protein seq | MRVASRRRRRPRQSAASPPASASGAPSMSAAGCHRRWS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr03 | 29359727 | 29360319 | + | OsNaBo_03g0029430.01 | OsNaBo_03g0029430.01,OsNaBo_03g0029430.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 2.319321 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0679800 | RBH | 1.180547 | 1.840904 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g47620 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0679800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0030040 | RBH | 0.0 | 0.0 | 1.451636 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0029760 | RBH | 0.0 | 0.0 | 0.570015 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0029820 | RBH | 0.0 | 0.0 | 1.984048 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0029910 | RBH | 0.064803 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0029640 | RBH | 0.000000 | 0.0 | 2.597016 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0467500 | RBH | 0 | 0.0238995 | 0.3960015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0029360 | RBH | 0.0 | 0.0 | 0.247784 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0468300 | RBH | 0.130807 | 0.08105 | 2.1330465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0029680 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0029750 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0029700 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0029530 | RBH | 0.000000 | 0.0 | 0.137111 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0029490 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G029480 | RBH | 0.0 | 0.0 | 0.814058 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0021290 | SBH | 0.0 | 0.0 | 0.000000 |
