Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0028460 | OGI:01023240 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:28528704-28530742 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | accaccaacagttctcatgcatccacattccactagtactgaatataccaattccatttaattacaaatgccatgtacataggttagttgtacaaaaagagaaattctcctatacaatctacaaaatgagacaaaacgatggcaaatctacaacaggcaaggcatttcccttgtagagaaatgccactccaaaatatcttgtgaccgccatgataagttgagcatctaaaaacttgaatcagattatcagaaagacaaaagtattaagggtcagatatatagattataataatactccattcaatgataagtaatctatgcaacacctactatttcaatacagaattgaagatcagtgtcaaatgtgcaggataagtgtcaataacataactgatgtagttccatttaattcaatctgtagcatagcttcgatattctcacaatccaccaatattaaattaccagttccattttatgagaaatttatgttgaagcagtataattgcaatcgtaacagattcaattacaatttacaagcagcaaggattgcaatttatctcacaaactatgggaacaaactgattttagcttacatgatgtatgagcctttaagttagtgttgatcttctgttccttcaggtacccttctctgacacttcagcaagaagttgattgctcacccacaggtcgcaaatcatagctagtaaataaataaaaagaagataagtgctgaagtacagtttaattggctcccacttgcaaatgttaacttatattagaattgagatgtatgtaggtgacattttcataattaatgtagatggaaaatctgaagcccgaagactgtttcaaatttgtactacgacaactcactgcaaggacagctagccacctaatttgcagagatcaactaagggagttttatttaaaataattatactaggatggtacattctacaagtaaaaactcagtaaacacacaatgtacatgcatatttctaataaatggattgatataagttggaaatggcttcactagtaaatagaacttggcttgagtagttgctgtactatgtggtgcatgcaaagttctcaattagcatttcaattattccaactggtcctgatagctgatgcatgtctgtgtgaaatcaataatagatcaaatcttAaaaaaaaatgttcaccactctttctagtacatatataataatgtctgccatgaaatgaaaaggaaatggagcaaacataatctccaatttattgaatagtgcatcatatagaagattagcacttaattgttaataccattgaagttcttgtaatggaaaagtaagcggaaatctaaaaatatgaacaattatccgtttttcaatttgatacattagatcagacagaaaatgtccataatgtggtacactacatgagaaatagtgcattttcttagtactaccacatttctgtaaacattacagctaacttcatgagaaatataaagcagaactggagcattagctaagattcatggggaaaagagacaagtaggttcaccctaaactcTtttgcaccagtattaagcatggttgcaatgcaagtttccatcccatggctatgaatgacagccccagctctcatcaaataagcctgcaaaataccaatgaaaattagacagtttagaacacactagccgaatgtgcgctctttctcttttggcaaccatgattggacaatcaataaatgagaattctataaaagctcctaatcaacaccactcccgaatacggtatgctcgatcctaacagaagacacgagagtagccactgctcgattaaccgctcgtgagggggaatcgagtgcccctcgcaggcaattcgtcgaacaggagccgtgcaggctgtaatgagagagagagaggggggggaccttgggtgcccagaggcggtcgtcggcggcgacccagcgccaggtgctgcgtgcgtccaggagctccatcacccgccccatcacctcctccccgagcacatccacggggtcctctc
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| CDS seq | atggggcgggtgatggagctcctggacgcacgcagcacctggcgctgggtcgccgccgacgaccgcctctgggcacccaaggcttatttgatgagagctggggctgtcattcatagccatgggatggaaacttgcattgcaaccatgcttaatactggtgcaaaAgagtttagggtgaacctacttgtctcttttccccatgaatcttag |
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| Protein seq | MGRVMELLDARSTWRWVAADDRLWAPKAYLMRAGAVIHSHGMETCIATMLNTGAKEFRVNLLVSFPHES |
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| Function | Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [UniProtKB/Swiss-Prot:C6JS30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0028460 | OsNaBo_03g0028460.02 | Chr03 | 28528704 | 28530742 | - | NAM | ||
| CDS seq | atggggcgggtgatggagctcctggacgcacgcagcacctggcgctgggtcgccgccgacgaccgcctctgggcacccaaggcttatttgatgagagctggggctgtcattcatagccatgggatggaaacttgcattgcaaccatgcttaatactggtgcaaaAgagtttaggctatga |
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| Protein seq | MGRVMELLDARSTWRWVAADDRLWAPKAYLMRAGAVIHSHGMETCIATMLNTGAKEFRL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0028460 | OsNaBo_03g0028460.03 | Chr03 | 28528704 | 28530742 | - | NAM | ||
| CDS seq | atggggcgggtgatggagctcctggacgcacgcagcacctggcgctgggtcgccgccgacgaccgcctctgggcacccaaggcttatttgatgagagctggggctgtcattcatagccatgggatggaaacttgcattgcaaccatgcttaatactggtgcaaaAgagtttagggtgaacctacttgtctcttttccccatgaatcttag
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| Protein seq | MGRVMELLDARSTWRWVAADDRLWAPKAYLMRAGAVIHSHGMETCIATMLNTGAKEFRVNLLVSFPHES |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0028460 | OsNaBo_03g0028460.01 | Chr03 | 28528704 | 28530742 | - | NAM | ||
| CDS seq | atggggcgggtgatggagctcctggacgcacgcagcacctggcgctgggtcgccgccgacgaccgcctctgggcacccaaggcttatttgatgagagctggggctgtcattcatagccatgggatggaaacttgcattgcaaccatgcttaatactggtgcaaaAgagtttagggtgaacctacttgtctcttttccccatgaatcttag
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| Protein seq | MGRVMELLDARSTWRWVAADDRLWAPKAYLMRAGAVIHSHGMETCIATMLNTGAKEFRVNLLVSFPHES |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr03 | 28528704 | 28530347 | - | OsNaBo_03g0028460.01 | OsNaBo_03g0028460.03,OsNaBo_03g0028460.01 | All |
| RI | Chr03 | 28528704 | 28530347 | - | OsNaBo_03g0028460.01 | OsNaBo_03g0028460.02,OsNaBo_03g0028460.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.720015 | 7.748922 | 1.562386 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g025639A | RBH | 3.144111 | 3.624014 | 1.745600 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g46230 | RBH | 0.000000 | 0.162501 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0029070 | RBH | 0.700404 | 2.978722 | 2.463560 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0028760 | RBH | 0.147725 | 0.000000 | 0.239832 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0028840 | RBH | 1.608337 | 2.405051 | 3.864077 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0028950 | RBH | 0.354186 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0028600 | RBH | 8.256809 | 11.699787 | 12.367869 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0452600 | RBH | 2.681549 | 8.7126255 | 10.021394 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0028310 | RBH | 0.714241 | 0.297424 | 1.174972 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0453800 | RBH | 0.39923 | 0.7801145 | 1.153886 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0028680 | RBH | 0.597484 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0028730 | RBH | 0.000000 | 3.701982 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0028740 | RBH | 10.745027 | 20.285795 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0013380 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0028470 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G028450 | RBH | 0.717662 | 1.719270 | 2.449294 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0013110 | RBH | 0.0 | 0.0 | 0.0 |
