Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0025260 | OGI:03064670 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:24579731-24581225 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggccgacgccgccgcggccaccgtccccggcgaggcctcctcctcctcctccgccgccgccaccaccaccgtgctcgattccctcGgggaggacatcacccgcatcgtcacccccgtctccacctgcatgctcctcgtcgtcctcctcgtctccctcctctcctccccctcctccccttcccccttcaccgccgccttctccgccgccgccggcccaggcggaggaggagacgacatcaccaccgccctcatcaccgccgtgaccttcgtcgtggccgtcacggccgccaccttcctcctcgcgttcctcttctacctccgctgcacgccctgcctccgcgcctacctcggcttctcctcgctctccgtcctcctcctcctcggcggccacgtcgccctcctcctcctctcccgcctccgcctcccgctcgacgccgcctccttcgcgctgctcctccccaacgccgccgccgcgctggcgctcgccgcgctctccccggcctccgtccccatcgcgctccaccaggccgcgctcgtcgccatcgccgtcctcaccgccttctggttcacgctgctcccggagtggaccacctgggcgcttctcgtcgccatggcggtctacgacctcgccgccgtgctgctgcccggtggccctctcagactgctccttgagttggccatagagaggaacgaggagatcccggcgttggtctacgaggcaaggccggtggatccccgccatggccacaattggcggctgtggagggagaggacgcaatctggtgcagagttggatgccagttccacagttgaggtgcttggtgaggtgttggggacaaatcttggtgccagttcagctggcaatttgggggtttccgcaatccgatccgatgaacgggttggcttggctggtgatgcaagaaacttgaggcttggaacatcgatgccaaatttgagctctgattctgctagtgcacaagttgaggtgttgccagcatcgccggagattagtgtgtctgttcctgaaatgagagtaccattgatccagccgcgaccagagagaaccagggatgaggaggatgacgaagatggcatagggttgagttcatctggggctatcaagcttggattgggggacttcatattctacagcgttctcgtcgggagggcagcaatgtatgactacatgacagtgtatgcatgttatcttgccatcattgctgggctcggtatcaccctgctgctactagcattctaccgtaaggcattgccggccctcccggtctcgatcgcccttggtgttgtgttttatgtgctcacaagaacattgctcgagacttttgtcatgcagtgctctactaatcttgtgatgTtttagcattcattgaaaatcagatattcaaatattgctgtaacccaaaaatccagacgttttcagcttggtttcagtctttgatattactgcaatttttacctggttgtccactgaaacg
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| CDS seq | atggccgacgccgccgcggccaccgtccccggcgaggcctcctcctcctcctccgccgccgccaccaccaccgtgctcgattccctcGgggaggacatcacccgcatcgtcacccccgtctccacctgcatgctcctcgtcgtcctcctcgtctccctcctctcctccccctcctccccttcccccttcaccgccgccttctccgccgccgccggcccaggcggaggaggagacgacatcaccaccgccctcatcaccgccgtgaccttcgtcgtggccgtcacggccgccaccttcctcctcgcgttcctcttctacctccgctgcacgccctgcctccgcgcctacctcggcttctcctcgctctccgtcctcctcctcctcggcggccacgtcgccctcctcctcctctcccgcctccgcctcccgctcgacgccgcctccttcgcgctgctcctccccaacgccgccgccgcgctggcgctcgccgcgctctccccggcctccgtccccatcgcgctccaccaggccgcgctcgtcgccatcgccgtcctcaccgccttctggttcacgctgctcccggagtggaccacctgggcgcttctcgtcgccatggcggtctacgacctcgccgccgtgctgctgcccggtggccctctcagactgctccttgagttggccatagagaggaacgaggagatcccggcgttggtctacgaggcaaggccggtggatccccgccatggccacaattggcggctgtggagggagaggacgcaatctggtgcagagttggatgccagttccacagttgaggtgcttggtgaggtgttggggacaaatcttggtgccagttcagctggcaatttggggcttggattgggggacttcatattctacagcgttctcgtcgggagggcagcaatgtatgactacatgacagtgtatgcatgttatcttgccatcattgctgggctcggtatcaccctgctgctactagcattctaccgtaaggcattgccggccctcccggtctcgatcgcccttggtgttgtgttttatgtgctcacaagaacattgctcgagacttttgtcatgcagtgctctactaatcttgtgatgTtttag
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| Protein seq | MADAAAATVPGEASSSSSAAATTTVLDSLGEDITRIVTPVSTCMLLVVLLVSLLSSPSSPSPFTAAFSAAAGPGGGGDDITTALITAVTFVVAVTAATFLLAFLFYLRCTPCLRAYLGFSSLSVLLLLGGHVALLLLSRLRLPLDAASFALLLPNAAAALALAALSPASVPIALHQAALVAIAVLTAFWFTLLPEWTTWALLVAMAVYDLAAVLLPGGPLRLLLELAIERNEEIPALVYEARPVDPRHGHNWRLWRERTQSGAELDASSTVEVLGEVLGTNLGASSAGNLGLGLGDFIFYSVLVGRAAMYDYMTVYACYLAIIAGLGITLLLLAFYRKALPALPVSIALGVVFYVLTRTLLETFVMQCSTNLVMF |
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| Function | Presenilin-like protein At2g29900 [UniProtKB/Swiss-Prot:Q9SIK7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0025260 | OsNaBo_03g0025260.01 | Chr03 | 24579731 | 24581110 | + | NAM | ||
| CDS seq | atggccgacgccgccgcggccaccgtccccggcgaggcctcctcctcctcctccgccgccgccaccaccaccgtgctcgattccctcGgggaggacatcacccgcatcgtcacccccgtctccacctgcatgctcctcgtcgtcctcctcgtctccctcctctcctccccctcctccccttcccccttcaccgccgccttctccgccgccgccggcccaggcggaggaggagacgacatcaccaccgccctcatcaccgccgtgaccttcgtcgtggccgtcacggccgccaccttcctcctcgcgttcctcttctacctccgctgcacgccctgcctccgcgcctacctcggcttctcctcgctctccgtcctcctcctcctcggcggccacgtcgccctcctcctcctctcccgcctccgcctcccgctcgacgccgcctccttcgcgctgctcctccccaacgccgccgccgcgctggcgctcgccgcgctctccccggcctccgtccccatcgcgctccaccaggccgcgctcgtcgccatcgccgtcctcaccgccttctggttcacgctgctcccggagtggaccacctgggcgcttctcgtcgccatggcggtctacgacctcgccgccgtgctgctgcccggtggccctctcagactgctccttgagttggccatagagaggaacgaggagatcccggcgttggtctacgaggcaaggccggtggatccccgccatggccacaattggcggctgtggagggagaggacgcaatctggtgcagagttggatgccagttccacagttgaggtgcttggtgaggtgttggggacaaatcttggtgccagttcagctggcaatttggggcttggattgggggacttcatattctacagcgttctcgtcgggagggcagcaatgtatgactacatgacagtgtatgcatgttatcttgccatcattgctgggctcggtatcaccctgctgctactagcattctaccgtaaggcattgccggccctcccggtctcgatcgcccttggtgttgtgttttatgtgctcacaagaacattgctcgagacttttgtcatgcagtgctctactaatcttgtgatgTtttag
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| Protein seq | MADAAAATVPGEASSSSSAAATTTVLDSLGEDITRIVTPVSTCMLLVVLLVSLLSSPSSPSPFTAAFSAAAGPGGGGDDITTALITAVTFVVAVTAATFLLAFLFYLRCTPCLRAYLGFSSLSVLLLLGGHVALLLLSRLRLPLDAASFALLLPNAAAALALAALSPASVPIALHQAALVAIAVLTAFWFTLLPEWTTWALLVAMAVYDLAAVLLPGGPLRLLLELAIERNEEIPALVYEARPVDPRHGHNWRLWRERTQSGAELDASSTVEVLGEVLGTNLGASSAGNLGLGLGDFIFYSVLVGRAAMYDYMTVYACYLAIIAGLGITLLLLAFYRKALPALPVSIALGVVFYVLTRTLLETFVMQCSTNLVMF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0025260 | OsNaBo_03g0025260.02 | Chr03 | 24580748 | 24581225 | + | IsoSeq | ||
| CDS seq | atgttatcttgccatcattgctgggctcggtatcaccctgctgctactagcattcta |
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| Protein seq | MLSCHHCWARYHPAATSIL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.988482 | 13.500336 | 2.238280 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0603800 | RBH | 1.087812 | 0.821977 | 1.330670 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g40700 | RBH | 0.722346 | 0.542861 | 0.354729 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0603800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0025810 | RBH | 0.122882 | 5.092105 | 2.210051 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0025580 | RBH | 0.130474 | 0.219023 | 1.074589 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0025630 | RBH | 0.506413 | 0.892626 | 1.941354 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0025640 | RBH | 0.087097 | 0.024027 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0025390 | RBH | 4.418569 | 11.797721 | 12.704240 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0394400 | RBH | 1.085371 | 2.2547865 | 1.081887 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0025170 | RBH | 0.080970 | 0.098062 | 0.075182 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0395500 | RBH | 1.2090155 | 3.0945285 | 2.9132045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0025420 | RBH | 0.116894 | 0.049525 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0025450 | RBH | 0.471479 | 2.781776 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0025570 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0025280 | RBH | 0.176376 | 0.188544 | 0.234573 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0025200 | RBH | 0.077488 | 0.902436 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G025290 | RBH | 0.259900 | 2.215279 | 1.359071 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
