Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0024890 | OGI:03063580 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:24164332-24166560 | ||||||||
| Gene Symbol | YSA | ||||||||||
| DNA seq | tcatcggtaactccattgggggttgttgatctccaggaaacggccaaaggttgctaatgcatcataaaatttgcggatcttgagatatccccttattgcagaaacatcagactctctgaggtcgaccttttccatgattatttcaatggctctaatgaagtaatcatccatacccaggtttaatagaccttcagctagcatacggaaggatgagaactctggtatgaaccccttatcaaccatctccaacatgaaatcaaaagcttctttaataggccctccaccacgacagagcccacgaaaaacaatcttatatgtcaaagcatcaggaggctcaccaacctctgccatctccctgaaaagactcagggcatctctgatattattccgtctgaagagagactggagcacaggattgtaagcttttggagtaggcctcatcccttttatccgcatacctctgagtaccttcaaagcaacctgtgtcctaccagccttgcatagaccgttaatcagagtaccgtacgtaacaacatccacttcaaatccatttgcagtcatagtttctaaaatatccgcagccttttttatgtcaccttgcttgcaataatgagttagaatagaattgtaagtgatattgttaggttgcaacccttcacttatcatttgattaataagctcaaaagcatcatcaatctttttgtccttgcacaaaccatcgatgagagtattgaatgtgattgcattcctcgaaatgccttgcagatccatttgatcaaaaacttcttctgcttcttctattctcattttcttgcataacccgtcaattatagtgttatatgtaattgtacttcgaggacaaccagtggactccatatcttttaacaaatccaatgctttaccaagcttcccaagtgagcaaagattgtcaatcaaagtattgtatgttacttcatccggggtgcatccactgttcttcatctcttcaaacaatcgaagtgcaagatgaggatcgcctactttgcagagcgcgttaatcagaatattgaaagtataaacatctggagagactcccttcactgtaacctgacgtgcaaggtccaaggcttcctcaagtcgattccccgtgcataaggcagcaatgagagtgttgaatgtggtaatgtcaggcaaacaaccccgatccaccatctgattcagaattccttttgcctcttcaagctgtccatttttacaaaggcaattcacaacgatattgtaggtgaaaacatcaggatcatggccctcctgaaccatcacatccatgactttgagggcatggccaacatgatcattttggcagagaccattaacaaaagtgttatatgtgatctggtcaggctcaaacccatcggcaatctcctgctgtatatacccaagagcatcctccaccctccctagcttgcagtacccattaatcaaaacattaaccgtcaccttcgtcgccgagcaccccatttccaacatcctggctttgaccctcagtgcagcctcgatgctcccctcctcaacaaatccttgcatcagggtggtaaacgtcgtctcgtcaggcgccacgcctctgctagacatttcctcaagcatgagaactgcagtcctgacctgatgtgctcggcacaacgccttcatcagtgtgttgaatgtgacaacatcaggcttgattcccctagcacccatctccgagtacactgattcaaggagtttcatcttgctcccctccacaagaacattgagaaggtgattgtacaccacggtgtctgcctgaatgccaaacaatggttggagttgattcagaatcaggtcgacggcatcgtcgaacagctgctgcccctcgtagctgtccaagaaggagtggactacgcccaatttcacctggtgcccctcccgccgcatctccgcgacgagcaccttcatgaggtcgagggccccgaccgcgccgagcttgcggatgatctcctcgtagacctcggggccgggcgcgaagtcgtcccgcgccagcgccgcgttgagcatccggagcgccgcgtcggggtccggctgctcgcgcagggcggtgaggagctgatcctggccagccgcccggagagggccgtgccgggaggcgcgccacctcggccgaagcggccctactccgacatggcacgggcacggcggcggcggcgcccgaggggcggcgcaaacgcggggcat
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| CDS seq | atgccccgcgtttgcgccgcccctcgggcgccgccgccgccgtgcccgtgccatgtcggagtagggccgcttcggccgaggtggcgcgcctcccggcacggccctctccgggcggctggccaggatcagctcctcaccgccctgcgcgagcagccggaccccgacgcggcgctccggatgctcaacgcggcgctggcgcgggacgacttcgcgcccggccccgaggtctacgaggagatcatccgcaagctcggcgcggtcggggccctcgacctcatgaaggtgctcgtcgcggagatgcggcgggaggggcaccaggtgaaattgggcgtagtccactccttcttggacagctacgaggggcagcagctgttcgacgatgccgtcgacctgattctgaatcaactccaaccattgtttggcattcaggcagacaccgtggtgtacaatcaccttctcaatgttcttgtggaggggagcaagatgaaactccttgaatcagtgtactcggagatgggtgctaggggaatcaagcctgatgttgtcacattcaacacactgatgaaggcgttgtgccgagcacatcaggtcaggactgcagttctcatgcttgaggaaatgtctagcagaggcgtggcgcctgacgagacgacgtttaccaccctgatgcaaggatttgttgaggaggggagcatcgaggctgcactgagggtcaaagccaggatgttggaaatggggtgctcggcgacgaaggtgacggttaatgttttgattaatgggtactgcaagctagggagggtggaggatgctcttgggtatatacagcaggagattgccgatgggtttgagcctgaccagatcacatataacacttttgttaatggtctctgccaaaatgatcatgttggccatgccctcaaagtcatggatgtgatggttcaggagggccatgatcctgatgttttcacctacaatatcgttgtgaattgcctttgtaaaaatggacagcttgaagaggcaaaaggaattctgaatcagatggtggatcggggttgtttgcctgacattaccacattcaacactctcattgctgccttatgcacggggaatcgacttgaggaagccttggaccttgcacgtcaggttacagtgaagggagtctctccagatgtttatactttcaatattctgattaacgcgctctgcaaagtaggcgatcctcatcttgcacttcgattgtttgaagagatgaagaacagtggatgcaccccggatgaagtaacatacaatactttgattgacaatctttgctcacttgggaagcttggtaaagcattggatttgttaaaagatatggagtccactggttgtcctcgaagtacaattacatataacactataattgacgggttatgcaagaaaatgagaatagaagaagcagaagaagtttttgatcaaatggatctgcaaggcatttcgaggaatgcaatcacattcaatactctcatcgatggtttgtgcaaggacaaaaagattgatgatgcttttgagcttattaatcaaatgataagtgaagggttgcaacctaacaatatcacttacaattctattctaactcattattgcaagcaaggtgacataaaaaaggctgcggatattttagaaactatgactgcaaatggatttgaagtggatgttgttacgtacggtactctgattaacggtctatgcaaggctggtaggacacaggttgctttgaaggtactcagaggtatgcggataaaagggatgaggcctactccaaaagcttacaatcctgtgctccagtctctcttcagacggaataatatcagagatgccctgagtcttttcagggagatggcagaggttggtgagcctcctgatgctttgacatataagattgtttttcgtgggctctgtcgtggtggagggcctattaaagaagcttttgatttcatgttggagatggttgataaggggttcataccagagttctcatccttccgtatgctagctgaaggtctattaaacctgggtatggatgattacttcattagagccattgaaataatcatggaaaaggtcgacctcagagagtctgatgtttctgcaataaggggatatctcaagatccgcaaattttatgatgcattagcaacctttggccgtttcctggagatcaacaacccccaatggagttaccgatga
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| Protein seq | MPRVCAAPRAPPPPCPCHVGVGPLRPRWRASRHGPLRAAGQDQLLTALREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEKVDLRESDVSAIRGYLKIRKFYDALATFGRFLEINNPQWSYR |
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| Function | Pentatricopeptide repeat-containing protein At3g53700, chloroplastic [UniProtKB/Swiss-Prot:Q9LFF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0024890 | OsNaBo_03g0024890.01 | Chr03 | 24164332 | 24166560 | - | NAM | ||
| CDS seq | atgccccgcgtttgcgccgcccctcgggcgccgccgccgccgtgcccgtgccatgtcggagtagggccgcttcggccgaggtggcgcgcctcccggcacggccctctccgggcggctggccaggatcagctcctcaccgccctgcgcgagcagccggaccccgacgcggcgctccggatgctcaacgcggcgctggcgcgggacgacttcgcgcccggccccgaggtctacgaggagatcatccgcaagctcggcgcggtcggggccctcgacctcatgaaggtgctcgtcgcggagatgcggcgggaggggcaccaggtgaaattgggcgtagtccactccttcttggacagctacgaggggcagcagctgttcgacgatgccgtcgacctgattctgaatcaactccaaccattgtttggcattcaggcagacaccgtggtgtacaatcaccttctcaatgttcttgtggaggggagcaagatgaaactccttgaatcagtgtactcggagatgggtgctaggggaatcaagcctgatgttgtcacattcaacacactgatgaaggcgttgtgccgagcacatcaggtcaggactgcagttctcatgcttgaggaaatgtctagcagaggcgtggcgcctgacgagacgacgtttaccaccctgatgcaaggatttgttgaggaggggagcatcgaggctgcactgagggtcaaagccaggatgttggaaatggggtgctcggcgacgaaggtgacggttaatgttttgattaatgggtactgcaagctagggagggtggaggatgctcttgggtatatacagcaggagattgccgatgggtttgagcctgaccagatcacatataacacttttgttaatggtctctgccaaaatgatcatgttggccatgccctcaaagtcatggatgtgatggttcaggagggccatgatcctgatgttttcacctacaatatcgttgtgaattgcctttgtaaaaatggacagcttgaagaggcaaaaggaattctgaatcagatggtggatcggggttgtttgcctgacattaccacattcaacactctcattgctgccttatgcacggggaatcgacttgaggaagccttggaccttgcacgtcaggttacagtgaagggagtctctccagatgtttatactttcaatattctgattaacgcgctctgcaaagtaggcgatcctcatcttgcacttcgattgtttgaagagatgaagaacagtggatgcaccccggatgaagtaacatacaatactttgattgacaatctttgctcacttgggaagcttggtaaagcattggatttgttaaaagatatggagtccactggttgtcctcgaagtacaattacatataacactataattgacgggttatgcaagaaaatgagaatagaagaagcagaagaagtttttgatcaaatggatctgcaaggcatttcgaggaatgcaatcacattcaatactctcatcgatggtttgtgcaaggacaaaaagattgatgatgcttttgagcttattaatcaaatgataagtgaagggttgcaacctaacaatatcacttacaattctattctaactcattattgcaagcaaggtgacataaaaaaggctgcggatattttagaaactatgactgcaaatggatttgaagtggatgttgttacgtacggtactctgattaacggtctatgcaaggctggtaggacacaggttgctttgaaggtactcagaggtatgcggataaaagggatgaggcctactccaaaagcttacaatcctgtgctccagtctctcttcagacggaataatatcagagatgccctgagtcttttcagggagatggcagaggttggtgagcctcctgatgctttgacatataagattgtttttcgtgggctctgtcgtggtggagggcctattaaagaagcttttgatttcatgttggagatggttgataaggggttcataccagagttctcatccttccgtatgctagctgaaggtctattaaacctgggtatggatgattacttcattagagccattgaaataatcatggaaaaggtcgacctcagagagtctgatgtttctgcaataaggggatatctcaagatccgcaaattttatgatgcattagcaacctttggccgtttcctggagatcaacaacccccaatggagttaccgatga
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| Protein seq | MPRVCAAPRAPPPPCPCHVGVGPLRPRWRASRHGPLRAAGQDQLLTALREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEKVDLRESDVSAIRGYLKIRKFYDALATFGRFLEINNPQWSYR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.145613 | 14.381500 | 8.018708 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0597200 | RBH | 5.418890 | 4.430089 | 2.619879 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g40020 | RBH | 3.664536 | 2.979605 | 0.674408 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0597200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0025420 | RBH | 1.611732 | 5.722619 | 6.478137 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0025200 | RBH | 0.674835 | 2.007634 | 3.928528 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0025250 | RBH | 3.447832 | 4.000828 | 8.585579 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0025290 | RBH | 0.958747 | 0.130125 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0024990 | RBH | 18.382576 | 2.690111 | 19.732073 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0388000 | RBH | 19.676211 | 16.9835225 | 27.316597 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0024790 | RBH | 0.995932 | 0.359797 | 1.643552 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0388300 | RBH | 18.312782 | 27.561242 | 22.349842 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0025070 | RBH | 0.609645 | 0.045211 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0025100 | RBH | 1.526082 | 2.458905 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0025190 | RBH | 13.220868 | 4.959862 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0024940 | RBH | 2.594795 | 0.634968 | 2.975092 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0024840 | RBH | 0.529755 | 3.278447 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G024930 | RBH | 1.079219 | 1.041078 | 1.933692 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0002140 | SBH | 0.0 | 0.0 | 0.0 |
