Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsNaBo_03g0024370		OGI:03061280 \| 16/16			NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)			Chr03:23574198-23578573		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		atggagattatgcaacagctcgccgccgccgccaccgccaccgccaccgccacggcaacgcccctgtgccttcctgaaccccctccgacggcgatgacgacggcgcaggtggaggccgccatcgcgacgctgcacggcaagaagcagggcctccgcgaggcctacgacagcctcgtcctccactcgcccatccccctccccttccgctggtccgacctcgactcccacctctcctccctccagtcctccatccacgcccgcttcagccagctgcaggccctccaggcttcccgccccgcgccccccgccgccgccgccgcgagccacgacgaggacgtcgagatggaggacgtccaggaacagggagaggacgaggtgatggcgcctccgtctacggtgcaggtcaaggaggagcctgtggaggcggcggcatgcgcgtcgaataccgccggcgagcgtgccggtgtcgggcaagatgggttcgttcgacccggcgggatggcggcggcgaagatggcgtctccgtcaaaggtgcaggtcaaggaggaacccgtggaggtgagtccatctcctccggccggcgccacgggtcttacggcggcggcatgcgcgagcatggacgccccgagactaaccgacgtctgcaagcgcgccggcggtggcggcggccaaggtttgtgcgcgcgaaacggtagtggtacagcgcagtcacccccgatccctagttgccctgtgctccagaagcagcacacggccggcgccccgaacggcagccaccctgtgctacggcaacacgctgctaacgccatgaacgccggacactcggccgcgttccggccgcagcagcacatgggtaaaccccgggacacgtgtgacttgcggaaggccgccgcaccgaacaccggagatcgcctgccgctgcaatggcggcagcagcgcgtgcacgctaatctcacgtgccccttgccgccaccggtggtcgcgggctcctcctcctcgccgccacagcagcgcgtgggcgtgttcccctcgccaacgccgcagatcgtgggctcctcgccgccgccgccatcacaggcgcgcgtgggagaggctaatgtaacgaacccatcgcggcagcagttcacagctagcgcgccacacgcgggcgatggccagctccagaagcggccgccgtggcagcggctgcagcgcgtgggcgtggctaatcccatgaacgccggtgacctgccgccccagaagccgcacttcacggccaacgcaagaaacgccggagtacacccgttccaggagcagcagcagccgccgcccgtggccaaacccacggacgccgccgccggtgacctgcttcctcagcagaagcagttgatggccaacgcaccaaacgccggagaacacttgctcccggagcaacagaagcagcagcccgtgacagctgcaaaacccgcgaacgcgccgcctctgcagcacgcggcgaacgccaccaacccagccgttctccggcggcagcggcagcggcagtgggttcgacttcgaccaccgaccgccactaacctgccgcaaacgaagcaggagcagcatcatctgttcatggctgacgacggcgccaacgcccgcaatcccctgtcgccgccgccgccgtgcggcatggccaaaccccccaactccggtgacccgctgacggatcagaacaatcagcagctcatggcgaatacccactctgcccctacaccggtttccacaccattggttgcatcgaaccagagtgaatcatcagccatgacgacgacgacgacgacgacgaacagcaaccaaaactccggcggcggtcgcaccggcccgcaacccgtagcggccggcgctgctccaaatccggccggcaaccagcagcaagggcagcggaaaggtggtgcaaacaggcgaggcggacgaggccaaggcaacaagaacaacaacgttgctaataccaatattagcaacatgagcaaggtgattggcaagggcaacaaggggcagggcaatggaaacccccagctcaacaagaatgggaacccccagttcaacaagaacgtgccgggtgatcatcaccagaagaacaagaatgcagggcagctttgctacaggtgcgggtgcagggggcactggtcgcgcatctgccgcactcctgagcatctggtgaagctttatcagcaggacagaaaggccaaactgcaagcaggagcgaatacgaatacggtttatgtgggagccatgacggattaggggttataagatgggtacattgattatatatctttgtgcgtgtagcatacccattttcgagttatcttaatgttatcgtactagacatgcttttcgtgtttcctacagcatttccccccctcaaattcttagttacagttatgttatcggtttttatgttagatctatattctagtatcaTtttattctggtaaaatttgatataagacatcatagtgttgtgtcatttgccataacacacttaaaaaaaatgtttgtttgtttgtttttgtgtgtgtcccctggccacatgacactttgttttggtggtaatgtgctaaaacactacaactactccatccagttcaaattacttgtgattctacatatgtccaaagttgaatatatctatctttcacaatcaattttgaaattcatacattcttatgacatgcaaattacatattactcctatgaaagtaTttttcatgatgcatctaaaagcataaattttatgatgtttgaccatataaacttctagactccatggctccgaatctccttccggtgccctacgtctcaGgggattacacacggtggcctccacccttgccgacaactactgggtaagggacatccgtggcgccctcattgtccttgtcatctcccaattcttgatggtctgggatgtgggtgcttcctacctagctctctccgggaactggagactgtcttgtatggtgttggacgggcaaccagtgctactcagcccgctcgccctatcatgctttattgctgggcaactcccctttccttgcaccgaactgctgtggcaggctgagggccctgccaagtgcaagttgttactttggcttgcattccagcaacgctgctggatggcagaccttctgcagaagcgtggcattgacggccactcggcctgccccttttgcgcgaagaaacttgaaacgccgaaccacatccttctcgattgtgtgttcgctcaccaagtctagctggcctgggctcgctccttcccgtggcgacactcttcagggctggtggtcatatgctagggtcaacttgcctgagcaccttcacaagggcttcgactttctgttcctatcctgacagctttggaaggagtggaacgtcagggtttttgattcttccctttcgctggtctaggtggtgttggggtccatcctccaagaggaccatctctggtctttagctagtgccgctttgtttggggatttgttgggaggatagggggttccttttcgcatctttccctctgtctaggagcaacagctttagttttatcttttcctttttgtttgcccctgcagtcccttccttgtaacttggcaagagccggtccggcccattgcgttgtaatgtcaaattctagaaattaatggtcaaaagtacaaatatttgacttaggacaagattaaaacaacaactaatttgaaacgaaggtcagtattatttttaacatgtttcggctcaactagagaaataaatttttggaaaggacgcttttatcaccatggcgtgtagcagcgaagcagcctcatggaggtcgagatcaacattgacattacaatttaaagaaagtcatttgctgatattttgctgatacttgcaatagactttgcaggagaagaatgcaaaaagaaatatgcccaacaatactgatggtgcccagagtttcatttcataaaaagattgtgccataatttacttccataccgagccagctcttctgaatcctttggccacagctttgtattcagactgtatttgatcgagagactgttggttctttttatagcagcaggaaatcaagttggttccaaggcataggcgcactacatgtccattgattaatctgcgtttcgtaaaaaaaaaaaaaagccaaagagttaatctgtgatcagaaataccagcccagtcagcgtttgaacaggctgccttctctgaatagtaagcctagcacaagctataatctttagagatcagcaagatcagttatgtagccgaccagtacagtaacttgtaaacactgaaatacttttattaactgagtaattctgagtattttaatatctcagatcctgaatgtctga More
CDS seq		atggagattatgcaacagctcgccgccgccgccaccgccaccgccaccgccacggcaacgcccctgtgccttcctgaaccccctccgacggcgatgacgacggcgcaggtggaggccgccatcgcgacgctgcacggcaagaagcagggcctccgcgaggcctacgacagcctcgtcctccactcgcccatccccctccccttccgctggtccgacctcgactcccacctctcctccctccagtcctccatccacgcccgcttcagccagctgcaggccctccaggcttcccgccccgcgccccccgccgccgccgccgcgagccacgacgaggacgtcgagatggaggacgtccaggaacagggagaggacgaggtgatggcgcctccgtctacggtgcaggtcaaggaggagcctgtggaggcggcggcatgcgcgtcgaataccgccggcgagcgtgccggtgtcgggcaagatgggttcgttcgacccggcgggatggcggcggcgaagatggcgtctccgtcaaaggtgcaggtcaaggaggaacccgtggaggtgagtccatctcctccggccggcgccacgggtcttacggcggcggcatgcgcgagcatggacgccccgagactaaccgacgtctgcaagcgcgccggcggtggcggcggccaaggtttgtgcgcgcgaaacggtagtggtacagcgcagtcacccccgatccctagttgccctgtgctccagaagcagcacacggccggcgccccgaacggcagccaccctgtgctacggcaacacgctgctaacgccatgaacgccggacactcggccgcgttccggccgcagcagcacatgggtaaaccccgggacacgtgtgacttgcggaaggccgccgcaccgaacaccggagatcgcctgccgctgcaatggcggcagcagcgcgtgcacgctaatctcacgtgccccttgccgccaccggtggtcgcgggctcctcctcctcgccgccacagcagcgcgtgggcgtgttcccctcgccaacgccgcagatcgtgggctcctcgccgccgccgccatcacaggcgcgcgtgggagaggctaatgtaacgaacccatcgcggcagcagttcacagctagcgcgccacacgcgggcgatggccagctccagaagcggccgccgtggcagcggctgcagcgcgtgggcgtggctaatcccatgaacgccggtgacctgccgccccagaagccgcacttcacggccaacgcaagaaacgccggagtacacccgttccaggagcagcagcagccgccgcccgtggccaaacccacggacgccgccgccggtgacctgcttcctcagcagaagcagttgatggccaacgcaccaaacgccggagaacacttgctcccggagcaacagaagcagcagcccgtgacagctgcaaaacccgcgaacgcgccgcctctgcagcacgcggcgaacgccaccaacccagccgttctccggcggcagcggcagcggcagtgggttcgacttcgaccaccgaccgccactaacctgccgcaaacgaagcaggagcagcatcatctgttcatggctgacgacggcgccaacgcccgcaatcccctgtcgccgccgccgccgtgcggcatggccaaaccccccaactccggtgacccgctgacggatcagaacaatcagcagctcatggcgaatacccactctgcccctacaccggtttccacaccattggttgcatcgaaccagagtgaatcatcagccatgacgacgacgacgacgacgacgaacagcaaccaaaactccggcggcggtcgcaccggcccgcaacccgtagcggccggcgctgctccaaatccggccggcaaccagcagcaagggcagcggaaaggtggtgcaaacaggcgaggcggacgaggccaaggcaacaagaacaacaacgttgctaataccaatattagcaacatgagcaagatcctgaatgtctga More
Protein seq		MEIMQQLAAAATATATATATPLCLPEPPPTAMTTAQVEAAIATLHGKKQGLREAYDSLVLHSPIPLPFRWSDLDSHLSSLQSSIHARFSQLQALQASRPAPPAAAAASHDEDVEMEDVQEQGEDEVMAPPSTVQVKEEPVEAAACASNTAGERAGVGQDGFVRPGGMAAAKMASPSKVQVKEEPVEVSPSPPAGATGLTAAACASMDAPRLTDVCKRAGGGGGQGLCARNGSGTAQSPPIPSCPVLQKQHTAGAPNGSHPVLRQHAANAMNAGHSAAFRPQQHMGKPRDTCDLRKAAAPNTGDRLPLQWRQQRVHANLTCPLPPPVVAGSSSSPPQQRVGVFPSPTPQIVGSSPPPPSQARVGEANVTNPSRQQFTASAPHAGDGQLQKRPPWQRLQRVGVANPMNAGDLPPQKPHFTANARNAGVHPFQEQQQPPPVAKPTDAAAGDLLPQQKQLMANAPNAGEHLLPEQQKQQPVTAAKPANAPPLQHAANATNPAVLRRQRQRQWVRLRPPTATNLPQTKQEQHHLFMADDGANARNPLSPPPPCGMAKPPNSGDPLTDQNNQQLMANTHSAPTPVSTPLVASNQSESSAMTTTTTTTNSNQNSGGGRTGPQPVAAGAAPNPAGNQQQGQRKGGANRRGGRGQGNKNNNVANTNISNMSKILNV
Function		-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsNaBo_03g0024370	OsNaBo_03g0024370.01	Chr03	23574198	23578573	+	NAM
CDS seq	atggagattatgcaacagctcgccgccgccgccaccgccaccgccaccgccacggcaacgcccctgtgccttcctgaaccccctccgacggcgatgacgacggcgcaggtggaggccgccatcgcgacgctgcacggcaagaagcagggcctccgcgaggcctacgacagcctcgtcctccactcgcccatccccctccccttccgctggtccgacctcgactcccacctctcctccctccagtcctccatccacgcccgcttcagccagctgcaggccctccaggcttcccgccccgcgccccccgccgccgccgccgcgagccacgacgaggacgtcgagatggaggacgtccaggaacagggagaggacgaggtgatggcgcctccgtctacggtgcaggtcaaggaggagcctgtggaggcggcggcatgcgcgtcgaataccgccggcgagcgtgccggtgtcgggcaagatgggttcgttcgacccggcgggatggcggcggcgaagatggcgtctccgtcaaaggtgcaggtcaaggaggaacccgtggaggtgagtccatctcctccggccggcgccacgggtcttacggcggcggcatgcgcgagcatggacgccccgagactaaccgacgtctgcaagcgcgccggcggtggcggcggccaaggtttgtgcgcgcgaaacggtagtggtacagcgcagtcacccccgatccctagttgccctgtgctccagaagcagcacacggccggcgccccgaacggcagccaccctgtgctacggcaacacgctgctaacgccatgaacgccggacactcggccgcgttccggccgcagcagcacatgggtaaaccccgggacacgtgtgacttgcggaaggccgccgcaccgaacaccggagatcgcctgccgctgcaatggcggcagcagcgcgtgcacgctaatctcacgtgccccttgccgccaccggtggtcgcgggctcctcctcctcgccgccacagcagcgcgtgggcgtgttcccctcgccaacgccgcagatcgtgggctcctcgccgccgccgccatcacaggcgcgcgtgggagaggctaatgtaacgaacccatcgcggcagcagttcacagctagcgcgccacacgcgggcgatggccagctccagaagcggccgccgtggcagcggctgcagcgcgtgggcgtggctaatcccatgaacgccggtgacctgccgccccagaagccgcacttcacggccaacgcaagaaacgccggagtacacccgttccaggagcagcagcagccgccgcccgtggccaaacccacggacgccgccgccggtgacctgcttcctcagcagaagcagttgatggccaacgcaccaaacgccggagaacacttgctcccggagcaacagaagcagcagcccgtgacagctgcaaaacccgcgaacgcgccgcctctgcagcacgcggcgaacgccaccaacccagccgttctccggcggcagcggcagcggcagtgggttcgacttcgaccaccgaccgccactaacctgccgcaaacgaagcaggagcagcatcatctgttcatggctgacgacggcgccaacgcccgcaatcccctgtcgccgccgccgccgtgcggcatggccaaaccccccaactccggtgacccgctgacggatcagaacaatcagcagctcatggcgaatacccactctgcccctacaccggtttccacaccattggttgcatcgaaccagagtgaatcatcagccatgacgacgacgacgacgacgacgaacagcaaccaaaactccggcggcggtcgcaccggcccgcaacccgtagcggccggcgctgctccaaatccggccggcaaccagcagcaagggcagcggaaaggtggtgcaaacaggcgaggcggacgaggccaaggcaacaagaacaacaacgttgctaataccaatattagcaacatgagcaagatcctgaatgtctga More
Protein seq	MEIMQQLAAAATATATATATPLCLPEPPPTAMTTAQVEAAIATLHGKKQGLREAYDSLVLHSPIPLPFRWSDLDSHLSSLQSSIHARFSQLQALQASRPAPPAAAAASHDEDVEMEDVQEQGEDEVMAPPSTVQVKEEPVEAAACASNTAGERAGVGQDGFVRPGGMAAAKMASPSKVQVKEEPVEVSPSPPAGATGLTAAACASMDAPRLTDVCKRAGGGGGQGLCARNGSGTAQSPPIPSCPVLQKQHTAGAPNGSHPVLRQHAANAMNAGHSAAFRPQQHMGKPRDTCDLRKAAAPNTGDRLPLQWRQQRVHANLTCPLPPPVVAGSSSSPPQQRVGVFPSPTPQIVGSSPPPPSQARVGEANVTNPSRQQFTASAPHAGDGQLQKRPPWQRLQRVGVANPMNAGDLPPQKPHFTANARNAGVHPFQEQQQPPPVAKPTDAAAGDLLPQQKQLMANAPNAGEHLLPEQQKQQPVTAAKPANAPPLQHAANATNPAVLRRQRQRQWVRLRPPTATNLPQTKQEQHHLFMADDGANARNPLSPPPPCGMAKPPNSGDPLTDQNNQQLMANTHSAPTPVSTPLVASNQSESSAMTTTTTTTNSNQNSGGGRTGPQPVAAGAAPNPAGNQQQGQRKGGANRRGGRGQGNKNNNVANTNISNMSKILNV More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	0.000000

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_03g0587600	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os03g39040	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os03g0587600	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_03g0024880	RBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_03g0024670	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_03g0024720	RBH	0.0	0.0	0.331878
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_03g0024780	RBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_03g0024490	RBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_03G0374700	RBH	0.0276685	0.009761	0.0111785
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_03g0024270	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_03G0376900	RBH	0.0078185	0	0.1269745
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_03g0024560	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_03g0024590	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_03g0024670	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_03g0024440	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_03g0024330	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_03G024410	RBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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