Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0023350 | OGI:03058080 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:22400659-22403750 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgctcacctcctcgctcccgccgcccaccgtcccgggctccaagcccaggcccgcggcggccacctccgtctccaccgctgccaccgccgacgccgcggtcgctggtggccggagcgggagcgggagcgggagcgggatcggccgcctctccgcgctcatccgctccctctgctccgcaggccgcaccgccgaggccgcgcgcgccctggccgacgcgggggacgctgcgggcgtcgtcgcctacaacgccatggtcgcggggtactgccgcgcaggccagctcgccgccgcgcgccgcctcgcggccgccgtcccggtcccgcccaacgcctacaccttcttccccgtcgtgcgggggctctgcacgcggggcaggatagccgacgcgctcgaggtgctcgacgaaatgtcgttcaaggggtgcgcgcccatcccgccaatgtaccacgtcatcctcgaggccgcgtgcaggagcggcggtttccggaactcggtgagggtcctcgaggcgatgcacgcgaagggatgcactctggacaccggcaactgcaatctcgtcctcaatgcaatctgcgagcaagggtgtgtggacgaggctgtggggctgctcaggaagttggcattcttcgggtgcgaggccgacatcgttagctacaacgcggtgttgaagggattgtgtatggccaagcggtggggagatgtggaggagctcatggatgagatggttagggtggactgcgcgcccaatatcgtgacgttcaacaccctgattggttatttgtgccggaatgggttgtttgagcgggtgcacgaggtccttgcacagatgtcggaacacggatgcacacctgacatcagaatgtacgcgactatcatcgatgggatctgcaaggaagggcatctggaggttgcgaatgagattttgaataggatgccttcgtatggtctcaagcctaatgttgtttgctacaacaccgtgttgaaaggcctgtgcagtgctgagcggtggaaggaagctgaggaattactgtctgagatgtttcagaaggactgCccccttgatgatgtgacattcaatattcttgttgatttcttttgccaaaatgggttggtcgacagggtgattgaacttcttgagcaaatgttgagccatggatgcatgccggatgtcatcacatacacaactgtaatcaatggattttgtaaagaagggcttatcgatgaagctgtcatgttgcttaaaagcatgtcatcatgtggatgcaagccaaatactgtcagttatactattgtactaaaaggtttgtgcagcgccgggagatgggtagatgctgaggaactgatgtctcaaatgattcaacaaggttgtcctccaaatcctgttacatttaatacactaatcaatttcttgtgcaaaaaagggttggttgagcaggccattgaacttcttaagcagatgctagtgaatggatgcagtcctgacttgattagttatagtacggtgattgatggacttggcaaagctggcaagacggaggaagcactcgagctactaaatgtgatggtcaataaagggatcagcccaaatacaataatttattcatcaatagcttgtgctctatctagagaaggcagagttaacaaggttattcagatgtttgacaatattaaagataccacaataaggtctgatgcagtgctctacaatgctgttatttcttcgctttgtaaaagatgggaaactgatcgtgctatcgatttctttgcttatatggtgtcaaatggatgcatgcccaatgaatctacctacactatgcttattaagggtttagctagcgagggattagcaaaggaggctcaagagttgctgagcgagttgtgctctaGgggagctctaaggaagcacttgatgaggcattttggaattgtatgagctgatagtattactggcttactgccaaatgccagtgcctaatggttttggcattgccagcacaaacttgcctacttgaagctacgacagctcatgatggttcgtaggtgaaagcctataagagagttccttttttttaccacatcgtatagcataccttacagctttcatgcagtttattacagtggcatacgtaagttgacattccaacattgtctcaagacatttctttgctagcagcatctttcttattaatgttgttgaagacactgagaattcagattcattggagctttcagagctttgtcattattgctaattgatgtatcagaaggatctacttagctgttttatgaatattgtatcagaattatctaactttccaacatttcattacaatagtaggagaaaccgtcttacatatagagcaattgtactcaagaaaatggaaagcagaaatgcaaagagaatctgactagtgcagtagataataattacaaacttcccattgaaatattgggcTttttggagattcagaatttaaggccaggtgagtttgttgcttttgtgcccaaacttcatgctggttgttttggccatgccatcctccatctctaggtatcagctctcctttcttctgggatgaggtgaaaagcaattcctcacccatttcctttcctcctcctggttctggactgctggtttgatggaagtagtagctgctgcagcagcagtttgcagtgtgctcaacatatcaggctatgaggcttccgtgccagtgacaatcgtgagttctccaatacttctccttattcttgcctcactgtattgtccgtacttgttttgtggacaaagggatttgcatgaattatatacacagtacttgtggcttctgtctgtctcagaagtgcactagttgaacagctgtaattgatgttaactagagctaatttctgttctttttttttttctgaaatgtactagttcatgtagaatttgtgctcaataatctgaaatctgatttcagttgaccgtttctacaaggtaatacctgaaaacctgggagctcaattcagtggactcttgctgttaaactataagtttgtttttttttcctgtagtcagtgcaattctctgatgtagccactgagaactag
More
|
||||||||||
| CDS seq | atgctcacctcctcgctcccgccgcccaccgtcccgggctccaagcccaggcccgcggcggccacctccgtctccaccgctgccaccgccgacgccgcggtcgctggtggccggagcgggagcgggagcgggagcgggatcggccgcctctccgcgctcatccgctccctctgctccgcaggccgcaccgccgaggccgcgcgcgccctggccgacgcgggggacgctgcgggcgtcgtcgcctacaacgccatggtcgcggggtactgccgcgcaggccagctcgccgccgcgcgccgcctcgcggccgccgtcccggtcccgcccaacgcctacaccttcttccccgtcgtgcgggggctctgcacgcggggcaggatagccgacgcgctcgaggtgctcgacgaaatgtcgttcaaggggtgcgcgcccatcccgccaatgtaccacgtcatcctcgaggccgcgtgcaggagcggcggtttccggaactcggtgagggtcctcgaggcgatgcacgcgaagggatgcactctggacaccggcaactgcaatctcgtcctcaatgcaatctgcgagcaagggtgtgtggacgaggctgtggggctgctcaggaagttggcattcttcgggtgcgaggccgacatcgttagctacaacgcggtgttgaagggattgtgtatggccaagcggtggggagatgtggaggagctcatggatgagatggttagggtggactgcgcgcccaatatcgtgacgttcaacaccctgattggttatttgtgccggaatgggttgtttgagcgggtgcacgaggtccttgcacagatgtcggaacacggatgcacacctgacatcagaatgtacgcgactatcatcgatgggatctgcaaggaagggcatctggaggttgcgaatgagattttgaataggatgccttcgtatggtctcaagcctaatgttgtttgctacaacaccgtgttgaaaggcctgtgcagtgctgagcggtggaaggaagctgaggaattactgtctgagatgtttcagaaggactgCccccttgatgatgtgacattcaatattcttgttgatttcttttgccaaaatgggttggtcgacagggtgattgaacttcttgagcaaatgttgagccatggatgcatgccggatgtcatcacatacacaactgtaatcaatggattttgtaaagaagggcttatcgatgaagctgtcatgttgcttaaaagcatgtcatcatgtggatgcaagccaaatactgtcagttatactattgtactaaaaggtttgtgcagcgccgggagatgggtagatgctgaggaactgatgtctcaaatgattcaacaaggttgtcctccaaatcctgttacatttaatacactaatcaatttcttgtgcaaaaaagggttggttgagcaggccattgaacttcttaagcagatgctagtgaatggatgcagtcctgacttgattagttatagtacggtgattgatggacttggcaaagctggcaagacggaggaagcactcgagctactaaatgtgatggtcaataaagggatcagcccaaatacaataatttattcatcaatagcttgtgctctatctagagaaggcagagttaacaaggttattcagatgtttgacaatattaaagataccacaataaggtctgatgcagtgctctacaatgctgttatttcttcgctttgtaaaagatgggaaactgatcgtgctatcgatttctttgcttatatggtgtcaaatggatgcatgcccaatgaatctacctacactatgcttattaagggtttagctagcgagggattagcaaaggaggctcaagagttgctgagcgagttgtgctctaGgggagctctaaggaagcacttgatgaggcattttggaattagcaattgtactcaagaaaatggaaagcagaaatgcaaagagaatctgactagtgcagtagataataattacaaacttcccattgaaatattgggcTttttggagattcagaatttaaggccaggtgaaaagcaattcctcacccatttcctttcctcctcctggttctggactgctggtttgatggaagtagtagctgctgcagcagcagtttgcagtgtgctcaacatatcaggctatgaggcttccgtgccagtgacaatctcagtgcaattctctgatgtagccactgagaactag
More
|
||||||||||
| Protein seq | MLTSSLPPPTVPGSKPRPAAATSVSTAATADAAVAGGRSGSGSGSGIGRLSALIRSLCSAGRTAEAARALADAGDAAGVVAYNAMVAGYCRAGQLAAARRLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGALRKHLMRHFGISNCTQENGKQKCKENLTSAVDNNYKLPIEILGFLEIQNLRPGEKQFLTHFLSSSWFWTAGLMEVVAAAAAVCSVLNISGYEASVPVTISVQFSDVATEN |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At1g09900 [UniProtKB/Swiss-Prot:Q3EDF8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0023350 | OsNaBo_03g0023350.01 | Chr03 | 22400659 | 22403750 | + | NAM | ||
| CDS seq | atgctcacctcctcgctcccgccgcccaccgtcccgggctccaagcccaggcccgcggcggccacctccgtctccaccgctgccaccgccgacgccgcggtcgctggtggccggagcgggagcgggagcgggagcgggatcggccgcctctccgcgctcatccgctccctctgctccgcaggccgcaccgccgaggccgcgcgcgccctggccgacgcgggggacgctgcgggcgtcgtcgcctacaacgccatggtcgcggggtactgccgcgcaggccagctcgccgccgcgcgccgcctcgcggccgccgtcccggtcccgcccaacgcctacaccttcttccccgtcgtgcgggggctctgcacgcggggcaggatagccgacgcgctcgaggtgctcgacgaaatgtcgttcaaggggtgcgcgcccatcccgccaatgtaccacgtcatcctcgaggccgcgtgcaggagcggcggtttccggaactcggtgagggtcctcgaggcgatgcacgcgaagggatgcactctggacaccggcaactgcaatctcgtcctcaatgcaatctgcgagcaagggtgtgtggacgaggctgtggggctgctcaggaagttggcattcttcgggtgcgaggccgacatcgttagctacaacgcggtgttgaagggattgtgtatggccaagcggtggggagatgtggaggagctcatggatgagatggttagggtggactgcgcgcccaatatcgtgacgttcaacaccctgattggttatttgtgccggaatgggttgtttgagcgggtgcacgaggtccttgcacagatgtcggaacacggatgcacacctgacatcagaatgtacgcgactatcatcgatgggatctgcaaggaagggcatctggaggttgcgaatgagattttgaataggatgccttcgtatggtctcaagcctaatgttgtttgctacaacaccgtgttgaaaggcctgtgcagtgctgagcggtggaaggaagctgaggaattactgtctgagatgtttcagaaggactgCccccttgatgatgtgacattcaatattcttgttgatttcttttgccaaaatgggttggtcgacagggtgattgaacttcttgagcaaatgttgagccatggatgcatgccggatgtcatcacatacacaactgtaatcaatggattttgtaaagaagggcttatcgatgaagctgtcatgttgcttaaaagcatgtcatcatgtggatgcaagccaaatactgtcagttatactattgtactaaaaggtttgtgcagcgccgggagatgggtagatgctgaggaactgatgtctcaaatgattcaacaaggttgtcctccaaatcctgttacatttaatacactaatcaatttcttgtgcaaaaaagggttggttgagcaggccattgaacttcttaagcagatgctagtgaatggatgcagtcctgacttgattagttatagtacggtgattgatggacttggcaaagctggcaagacggaggaagcactcgagctactaaatgtgatggtcaataaagggatcagcccaaatacaataatttattcatcaatagcttgtgctctatctagagaaggcagagttaacaaggttattcagatgtttgacaatattaaagataccacaataaggtctgatgcagtgctctacaatgctgttatttcttcgctttgtaaaagatgggaaactgatcgtgctatcgatttctttgcttatatggtgtcaaatggatgcatgcccaatgaatctacctacactatgcttattaagggtttagctagcgagggattagcaaaggaggctcaagagttgctgagcgagttgtgctctaGgggagctctaaggaagcacttgatgaggcattttggaattagcaattgtactcaagaaaatggaaagcagaaatgcaaagagaatctgactagtgcagtagataataattacaaacttcccattgaaatattgggcTttttggagattcagaatttaaggccaggtgaaaagcaattcctcacccatttcctttcctcctcctggttctggactgctggtttgatggaagtagtagctgctgcagcagcagtttgcagtgtgctcaacatatcaggctatgaggcttccgtgccagtgacaatctcagtgcaattctctgatgtagccactgagaactag
More
|
|||||||
| Protein seq | MLTSSLPPPTVPGSKPRPAAATSVSTAATADAAVAGGRSGSGSGSGIGRLSALIRSLCSAGRTAEAARALADAGDAAGVVAYNAMVAGYCRAGQLAAARRLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGALRKHLMRHFGISNCTQENGKQKCKENLTSAVDNNYKLPIEILGFLEIQNLRPGEKQFLTHFLSSSWFWTAGLMEVVAAAAAVCSVLNISGYEASVPVTISVQFSDVATEN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.576043 | 2.654330 | 1.916933 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0569800 | RBH | 6.179534 | 4.096554 | 1.367256 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g37260 | RBH | 4.095560 | 2.696401 | 0.344438 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0569800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0023800 | RBH | 0.588925 | 0.000000 | 0.557746 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0023630 | RBH | 0.899576 | 0.424055 | 0.817732 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0023670 | RBH | 0.544821 | 0.961393 | 2.701742 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0023700 | RBH | 0.336608 | 0.069702 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0023510 | RBH | 13.025476 | 1.549171 | 1.520202 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0354700 | RBH | 5.0592425 | 0.6788295 | 0.5122115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0023290 | RBH | 0.693805 | 0.143919 | 0.165875 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0072800 | SBH | 0.086424 | 0.1564015 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0023560 | RBH | 0.665702 | 0.037594 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0023590 | RBH | 1.121674 | 1.355336 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0023690 | RBH | 9.203083 | 2.832776 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0023490 | RBH | 1.061198 | 0.0 | 0.417934 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0023370 | RBH | 0.886519 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G023400 | RBH | 0.745421 | 0.995485 | 0.994066 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
