Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0022190 | OGI:03049180 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:19073351-19077310 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acagagcaggcggcggccggtgactcgggaggcgggcaggcggcaggcggcggcgggcgcgcgcagctgcggcgctccgagctcgctgctcgggctctggcgcaggcggcggcggcgcaggctggctgcagggaggccgggacgaaggcaggccgtggaggaacggcggccgcagcagaagtgcaaaacccatcggagggccagcgtcgccgagccggcaatggcagcgcgagccgctccgccaccatgcctccaccacccgttcccaccatctccaccctctcagcgctcctcgctggctgcgcctccctcagcaccgccgccgcgctccacgcccacctcctcaaatcctcccgcctcttccggcccgtcttccttgccaactgcctcgcagccgcctactgccgcctcggcgctgccccgtccgctgtcgccgtgctccgccacgcgccggagcccaacatattctctcgcaatatcctcctcggcgccatgctcaagtcccgcgatctcctgtccgcgcgcaggctgttcgacgaaatgcctgacagggatgccgtcgcctacaactccatgatgtcaggctacattgacggtgggcgcaacaatgaggcgttaagcctcgtttggacgatgttggaggcaggcgtcaggcctagcggcttcaccttctccattattttgtcagctgttcgggttgctcgtcatggggtgcaggtccacgcagctgctgtccgccactgttttgcacatcagaattctgtagtcggcaatgcactcatcaatatgtatcggcgtgtcggcctcttggaatatgcagtgcaggtgttttggagtatgaatggacatgatattgtttcttggaattccgtcatgtcagtgtacagggatgatggccagagacgtcaggtttttgagtgtttccagatgattaggagccatggattattttttgacgagtgcagtttgtccacagtgctcagtgcatgcatagatgctgaggattcgtctaagggtgaccagttgttgacccactgtgtcaaaatggggctccttagaaattctctcatttgtagtgctgttattggcctattatgtgcatctgacagacttgctgatgctgtttatcttttcaaaggaatggcaacatgggactctgaaacgtgtaatgcaatgatatcaggctatgctaggagtggattaatggagcaagctctgggtcttttcacgatggcactgcaaaatggtattcttccaactgggtttacttttgcgagcgtgctgagatggagttcatgttttggtttggtggaacaaggcactcaaattcatgccctgatttttaaacttggccttgaagatgatttaatcattgctactgcgcttgttgacatgtactgcaaattagcttccttgaaacatgccaagaaaatcttcagcagggttagtttcaaggatttggtattgtggaatacaatgatcattggtctttcacacaatgggagaggtaaagaagctcttcaagtgtttcggcagatgttgaagtgtaatatccaaccagacaggattacactttctggtgttttatctgcttgtagctttgaaggtcttgtaaatgaaggaataaaaatggtttccctatttgaagacaaataccatattgttcctggtgtggagcactacacatgtgttgttgacatgttaagccgtgcaggaatgcttggagaggcagtagattttgtagagagcaagttgcaaaaatgtattgttgctgctttatccaatgttcttgaggcctcattgatcaaaagggactttcgcatggcagaattgattgcagaaaagatgacgaaattgaagcctcgatcctcactaccgtatgttgttctggctcaatcttatggtgccagatgtaagtgggaaagcatggccaggatgtggaggtcaatggaagatcagggatcaaaggaagttcaggaatgtagttggatctgtaccaagaatcgaatccatgtgtttacttctgaacaaatattgcatcatggtaaagaggctacatatgcagtgttagatctgttgttttgggacatgatggaacacagatatgctccttgctgttttgaatttatatcacaagaagagcccaataacaaggagacatcagcttgtcatcatcagctgttctgtgattattctccatgaggtatatggatgaaaaacctacatttttattgagatcatctttattttcaccaatctaaatttaggttgataagtattattctaactttatggtggcagagatagagatagagagagagagagagagagagagagagagatagatagatagataactttagtaaataaaatgttatcgtacaaatcaaaactacttttctcaccataccctcaaatctgaatctaTttttttagttgatcttaacctaaatttaacatggcacatggctgggtttctgggaacagaagctggaatgatttaaaactccgggtgtggcttcagttttgacgttggttactaagccatagtctaccctataattcaccaacacattcttacattccttattcctcattgatcagtccggatcgtctcactgagatcaaacgcctctcgttgctcccacctctccatctcgcaaaccaatggatccctctccccacgacttcccctctctgcccgaaatttgaccttctatccatattagccgtcgcccatgccatctCctcctctctctctctcgccgcccgtcacttccccctcccgcgctgccgccatcaccaatctggaagcgctgctgctaccaccggcgccgcggatcaagcgatgcctcgtcgccgttgggtcaggggcgacatcacctctccgccgtactgtcaagggcgcctccttgtcgccctaatccctcagccgccgccatctccgccaacgaaagatcggtgcttcgagtggctggcggccgcgccctaaccaccgtccctgtgcaacaaccacagatcgccaccttgccgtcttctaggcggcacatgtcaggttgaccacctcctccctcccccttagccgtcggcaccgccaatctcgcctcctctgatgggtcatcctctcctgatcttctctcggggcaacttaattgaataatgggtacatgtgaattgtgaacgttgctatcatgaaacaaaggctttatgaagccaggtggcggatcaagccaaactggaccgcattagaggtacaaagacattctcccttttctcatctgaatcctgagatgaaatcagttcgaatttcggggagattgccaaatatgtcctattgcatctgtctagattattgcatatctgtgcgcagtacacatctgtagtatagattaaacttttggtagcatatataagttggatctcatatgattaaatggttaatctgatatataagtattctgctttggttgcctaacacctttttatcccttcacaaaaatgcctctcaagtctttgttatgatttgtataagattgcaacttggatttgagacactactctatgtagcaatttacatggtgcacttcattatttttgttttgactggtgaaaccgggcctcactaattgaaggaataacacatagctctgccgtgcttgtggtccccccctgttggagcaggtccgccatggatcttgagccgtgctcattgaggggatgcagttagtgatggagttagaacaggacttaaaggtaataatcaagttaatcagtgtcttccttgcatttttcaattaaactgtaacttcattcactgcaattacattcacgttttaagcttggttttctcatcatttttaatgaagacttaacttgatttttgtgcagcacttttttttgcaaggagaagggcagtggaaatcagggcaaggagaaaggcagtggattgttccattttga
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| CDS seq | atgcctccaccacccgttcccaccatctccaccctctcagcgctcctcgctggctgcgcctccctcagcaccgccgccgcgctccacgcccacctcctcaaatcctcccgcctcttccggcccgtcttccttgccaactgcctcgcagccgcctactgccgcctcggcgctgccccgtccgctgtcgccgtgctccgccacgcgccggagcccaacatattctctcgcaatatcctcctcggcgccatgctcaagtcccgcgatctcctgtccgcgcgcaggctgttcgacgaaatgcctgacagggatgccgtcgcctacaactccatgatgtcaggctacattgacggtgggcgcaacaatgaggcgttaagcctcgtttggacgatgttggaggcaggcgtcaggcctagcggcttcaccttctccattattttgtcagctgttcgggttgctcgtcatggggtgcaggtccacgcagctgctgtccgccactgttttgcacatcagaattctgtagtcggcaatgcactcatcaatatgtatcggcgtgtcggcctcttggaatatgcagtgcaggtgttttggagtatgaatggacatgatattgtttcttggaattccgtcatgtcagtgtacagggatgatggccagagacgtcaggtttttgagtgtttccagatgattaggagccatggattattttttgacgagtgcagtttgtccacagtgctcagtgcatgcatagatgctgaggattcgtctaagggtgaccagttgttgacccactgtgtcaaaatggggctccttagaaattctctcatttgtagtgctgttattggcctattatgtgcatctgacagacttgctgatgctgtttatcttttcaaaggaatggcaacatgggactctgaaacgtgtaatgcaatgatatcaggctatgctaggagtggattaatggagcaagctctgggtcttttcacgatggcactgcaaaatggtattcttccaactgggtttacttttgcgagcgtgctgagatggagttcatgttttggtttggtggaacaaggcactcaaattcatgccctgatttttaaacttggccttgaagatgatttaatcattgctactgcgcttgttgacatgtactgcaaattagcttccttgaaacatgccaagaaaatcttcagcagggttagtttcaaggatttggtattgtggaatacaatgatcattggtctttcacacaatgggagaggtaaagaagctcttcaagtgtttcggcagatgttgaagtgtaatatccaaccagacaggattacactttctggtgttttatctgcttgtagctttgaaggtcttgtaaatgaaggaataaaaatggtttccctatttgaagacaaataccatattgttcctggtgtggagcactacacatgtgttgttgacatgttaagccgtgcaggaatgcttggagaggcagtagattttgtagagagcaagttgcaaaaatgtattgttgctgctttatccaatgttcttgaggcctcattgatcaaaagggactttcgcatggcagaattgattgcagaaaagatgacgaaattgaagcctcgatcctcactaccgtatgttgttctggctcaatcttatggtgccagatatatgctccttgctgttttgaatttatatcacaagaagagcccaataacaaggagacatcagcttgtcatcatcagctgttctgtgattattctccatgagcacttttttttgcaaggagaagggcagtggaaatcagggcaaggagaaaggcagtggattgttccattttga
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| Protein seq | MPPPPVPTISTLSALLAGCASLSTAAALHAHLLKSSRLFRPVFLANCLAAAYCRLGAAPSAVAVLRHAPEPNIFSRNILLGAMLKSRDLLSARRLFDEMPDRDAVAYNSMMSGYIDGGRNNEALSLVWTMLEAGVRPSGFTFSIILSAVRVARHGVQVHAAAVRHCFAHQNSVVGNALINMYRRVGLLEYAVQVFWSMNGHDIVSWNSVMSVYRDDGQRRQVFECFQMIRSHGLFFDECSLSTVLSACIDAEDSSKGDQLLTHCVKMGLLRNSLICSAVIGLLCASDRLADAVYLFKGMATWDSETCNAMISGYARSGLMEQALGLFTMALQNGILPTGFTFASVLRWSSCFGLVEQGTQIHALIFKLGLEDDLIIATALVDMYCKLASLKHAKKIFSRVSFKDLVLWNTMIIGLSHNGRGKEALQVFRQMLKCNIQPDRITLSGVLSACSFEGLVNEGIKMVSLFEDKYHIVPGVEHYTCVVDMLSRAGMLGEAVDFVESKLQKCIVAALSNVLEASLIKRDFRMAELIAEKMTKLKPRSSLPYVVLAQSYGARYMLLAVLNLYHKKSPITRRHQLVIISCSVIILHEHFFLQGEGQWKSGQGERQWIVPF |
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| Function | Pentatricopeptide repeat-containing protein At1g43980, mitochondrial [UniProtKB/Swiss-Prot:Q9LP03] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0022190 | OsNaBo_03g0022190.01 | Chr03 | 19073351 | 19077310 | + | NAM | ||
| CDS seq | atgcctccaccacccgttcccaccatctccaccctctcagcgctcctcgctggctgcgcctccctcagcaccgccgccgcgctccacgcccacctcctcaaatcctcccgcctcttccggcccgtcttccttgccaactgcctcgcagccgcctactgccgcctcggcgctgccccgtccgctgtcgccgtgctccgccacgcgccggagcccaacatattctctcgcaatatcctcctcggcgccatgctcaagtcccgcgatctcctgtccgcgcgcaggctgttcgacgaaatgcctgacagggatgccgtcgcctacaactccatgatgtcaggctacattgacggtgggcgcaacaatgaggcgttaagcctcgtttggacgatgttggaggcaggcgtcaggcctagcggcttcaccttctccattattttgtcagctgttcgggttgctcgtcatggggtgcaggtccacgcagctgctgtccgccactgttttgcacatcagaattctgtagtcggcaatgcactcatcaatatgtatcggcgtgtcggcctcttggaatatgcagtgcaggtgttttggagtatgaatggacatgatattgtttcttggaattccgtcatgtcagtgtacagggatgatggccagagacgtcaggtttttgagtgtttccagatgattaggagccatggattattttttgacgagtgcagtttgtccacagtgctcagtgcatgcatagatgctgaggattcgtctaagggtgaccagttgttgacccactgtgtcaaaatggggctccttagaaattctctcatttgtagtgctgttattggcctattatgtgcatctgacagacttgctgatgctgtttatcttttcaaaggaatggcaacatgggactctgaaacgtgtaatgcaatgatatcaggctatgctaggagtggattaatggagcaagctctgggtcttttcacgatggcactgcaaaatggtattcttccaactgggtttacttttgcgagcgtgctgagatggagttcatgttttggtttggtggaacaaggcactcaaattcatgccctgatttttaaacttggccttgaagatgatttaatcattgctactgcgcttgttgacatgtactgcaaattagcttccttgaaacatgccaagaaaatcttcagcagggttagtttcaaggatttggtattgtggaatacaatgatcattggtctttcacacaatgggagaggtaaagaagctcttcaagtgtttcggcagatgttgaagtgtaatatccaaccagacaggattacactttctggtgttttatctgcttgtagctttgaaggtcttgtaaatgaaggaataaaaatggtttccctatttgaagacaaataccatattgttcctggtgtggagcactacacatgtgttgttgacatgttaagccgtgcaggaatgcttggagaggcagtagattttgtagagagcaagttgcaaaaatgtattgttgctgctttatccaatgttcttgaggcctcattgatcaaaagggactttcgcatggcagaattgattgcagaaaagatgacgaaattgaagcctcgatcctcactaccgtatgttgttctggctcaatcttatggtgccagatatatgctccttgctgttttgaatttatatcacaagaagagcccaataacaaggagacatcagcttgtcatcatcagctgttctgtgattattctccatgagcacttttttttgcaaggagaagggcagtggaaatcagggcaaggagaaaggcagtggattgttccattttga
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| Protein seq | MPPPPVPTISTLSALLAGCASLSTAAALHAHLLKSSRLFRPVFLANCLAAAYCRLGAAPSAVAVLRHAPEPNIFSRNILLGAMLKSRDLLSARRLFDEMPDRDAVAYNSMMSGYIDGGRNNEALSLVWTMLEAGVRPSGFTFSIILSAVRVARHGVQVHAAAVRHCFAHQNSVVGNALINMYRRVGLLEYAVQVFWSMNGHDIVSWNSVMSVYRDDGQRRQVFECFQMIRSHGLFFDECSLSTVLSACIDAEDSSKGDQLLTHCVKMGLLRNSLICSAVIGLLCASDRLADAVYLFKGMATWDSETCNAMISGYARSGLMEQALGLFTMALQNGILPTGFTFASVLRWSSCFGLVEQGTQIHALIFKLGLEDDLIIATALVDMYCKLASLKHAKKIFSRVSFKDLVLWNTMIIGLSHNGRGKEALQVFRQMLKCNIQPDRITLSGVLSACSFEGLVNEGIKMVSLFEDKYHIVPGVEHYTCVVDMLSRAGMLGEAVDFVESKLQKCIVAALSNVLEASLIKRDFRMAELIAEKMTKLKPRSSLPYVVLAQSYGARYMLLAVLNLYHKKSPITRRHQLVIISCSVIILHEHFFLQGEGQWKSGQGERQWIVPF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.227936 | 1.895946 | 0.615841 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0435200 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g32090 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0435200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0022760 | RBH | 0.445757 | 0.000000 | 1.414064 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0022630 | RBH | 0.000000 | 0.000000 | 1.497627 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0022700 | RBH | 0.703480 | 1.186812 | 2.534131 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0022670 | RBH | 0.063848 | 0.028210 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0022470 | RBH | 1.073461 | 2.830636 | 1.258510 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0302300 | RBH | 1.7638625 | 8.8731635 | 6.1633865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0022220 | RBH | 0.213703 | 0.0 | 0.168967 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0306400 | RBH | 2.295048 | 14.4206945 | 13.516243 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0022520 | RBH | 0.122469 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0022500 | RBH | 0.000000 | 1.464703 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0022630 | RBH | 1.950576 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0022450 | RBH | 0.256183 | 0.132629 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0022300 | RBH | 0.000000 | 0.577249 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G022280 | RBH | 0.343768 | 0.769809 | 0.770920 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
