Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNaBo_03g0019220 OGI:03040440 | 15/16 NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) Chr03:15593104-15599558
Gene Symbol -
DNA seq

atgttttgcaggTttccaaggtgggctcaaccatccatgagatatgttgtaacctttacaacgcaagtaccaatgcgacacattctctctaaaaagataaTggctatcaacaccaggcttgaggaaattattcaaaacaaagataggtacaagatggacgatgtgaataagggaatagaagtgacatggaaggcTtcaacgtcaatatccgaaagcaattctgagctgtaagtgtgcaaaagtgcatttttccttgtgttttacatgcttctctagttggttctccattatccaacatacttagtgtgcacttaattaGatttaccagggtaaattgtttatataaattgttagagaggATatataggtgtaatttctataagaaatataccaacaaagcaccaaatgcattgttgtccatcacacatgttctaataTttatggacagaactattaaaaatacaatcatgtttgaaagtttagccacacacattccttgaacacagagatatgtagcctagggggggataggcttacctgaaattctaaaaacaaatcgcagcggttaaattaacagggtccggaacatcctgatgaagaacgccagaacttccggtgttgcaagacaggaacttccgagcaattggtaaatcagagcaaagattcaaacttcgactcaagaaacttgacctattagagcaatataaaacataggataacaaaaaagtaaatggatcacagagacgagcacAaaatcatcatagagaggacaagagggaTtttttttcctgaagttcggatcgcacgtatcctactctctgttgaggaactctgaagagttgggtctcgattaacctcttgcctctcttgtgcaaagattccagaaaaggtccacagccttcaatccaacacccttaggttattctctagaatttgagtgaccgccaagatccaactcaactttcttctagagaggaccacaagtgagaattgctctactaggacgatctctaaaaccttagcacattttccttaatcacttacctcgtttccttgcggaggtgaggaataccttcacAaacttgcccgagacatccacaatctcgaaggaagctcatgggacacctaaccgtctaggaagagacctccaagagtaataagctccaaatgatagcccacgagatacccaagtgctcaattcatcctaaccttcaaaaccttttgcaaatctctctaacaccctcacaatcactctctcacAcaagaatggctcaagattttgggtgggggaagcaaattcaccttgggagaggctagaaataactagggaacggaagagcaaaagtgaaatgtccaaagaatgagctgggtccgagtttgatatatataaCaaatatgtgacatcatctagccgtcactcacagatttgaactaaaGggtggaccggaagttcctggtcctggggctaggaacttccgaccaacatttaggaaaatgtcgacttcacctcagctaggaacttccggcccaaagtgccaggaacttccgtCcggcccttgctgtcttgagaagacccattctaaaaatggctcttaaaaatatttcttcgcttggacaggagtaagagcacttgtactatctcagaaccacacctggaatccctcttaatagtatgattttttctaaactcgaatgcaaaaaagtaaactagtctaatacaactccgagttctttcgccattttaaatttgttgatttgggggttctccaagcatcctgggactaaaacacttgcaTtttactccataaacacattgatcccttaaccacttcatcattaatcaccAaaaaccactagggggataaatgcactttcaattctggaagagaaatatttgtgaacaaacAaaaagtaacaaagaataaagtatgaaactatagtgacagcattttggatgtaaatatataatccaatggcctagaatcctgtTggacagtctaataagtagatagatcaaaaattAatgttcccaatgatgaaaaatggtggaaatggcattccaatccagacttggtggtgtggttctcTtctattttccaatctgcagatggcatatgatttctttaactacatatagatacaactgtgtttttttaatcacaccgaacactcgtaagtctttgacttgctaaaaagTggagatgtatattaataatgtttatatcttaattagtgtccacatataaTtaaacatatatggaattactttaattgTtactttgaaaatttaccgcacacaattctctcagggcatgtgttgtggtgtgcatatgttgcatgtaaatggagaaaaaatagtagctttagggctacttttgattgaaggaaattcaaataaattttaaaggattctaaacataagaatttttttgctctataTtattgtttggaacaaaagaTtttagcataccaaattcccatggattgctatgctctggacccattttatatatagaaaattttacactaagcttaaaccttattttacatttcctttgagaagtccaatatacatcttatctctcttagttccatcaaattcctatggttatattCcaatgattcatccaaacacaaatatgtttcgattcctatgttttgaattaccataggatttgttcacatgtgacactctaattttgtcttcTtttctattcctgcatttttgaaatcttgcattccaaatgatccctaaTACttttcatgtaaaaggggttaagccactggaaagttgtcatgtttgacattggtagttatagcacaaactggtaaaccaaataatattggtaatttctttaaaaaattacacttatcatatcattaatgaaaatataactcagcctctacaccaaccattaatgtatagaggcttttaattatgggacttaagtaccatatagtcataactccagtgtcagaccaaatatacttcgtgatcaagcaagagcacatcgacgaaacaCTTTTTATAGCTCCATGCATTTTTACAAGAGAAATGCTATATAAATTATAGAAAGAGAATAAAAACAAATAATGAACATCAAACTGAACATTATTCAAACCTCAACTGTCATGCATAGTTTTTTACCTCGGTCTTGTTTAATAGTGATTTTGGATGACATGGTGCCAAGATGGTATACCAAGAAAAAGTAGGTTTTTGAGTAAAATGGATCTTATGAAATCTCACTTATTTTAGAAACCACCAATATTCTTGACTAATTTTGTACGTACAAAATAAAGTAGGTTAATTGAGTTATAAAACATTATTTAAAACCGAACGAAACCATTTTTTTGGGGGAAACAATTTATGTAGGTTCTAAATACTCTAATGTGCATGCGTGTTCTAACTTCTTCAGTATTTACTACTCCCTCCGTTTTTTAATAGATGACGCCGTTGACTTTTTCTCACATGTTTGACCATTCGTCTTATTCAAAAAATTTATGCAAATGTATAAGATATAAATCACACTTAAAGTACTATGAGTGATAAAACAACTCATAACAAAATAAATTATAATTATGTAAATTtttttgaataagacgaatggtgaaacatgtgagaaaaagtcaacggcgtcatctattaaaaaacggaggtagtagatgtttaaaaatatttttacttgggccatgttactgcccgttatgcaaaacaactttgaaatttgcccaaggtatgttgaaatatacaccatatattatcaaattttaggtctgtatgatgaaccgtgtggatattaggtacaaagtagaaaagctctcaaactaatcagaaatagatagacttaaatttaccttttaaatttactagaaaaagtttgttttttgaaattactagcatgcacctactagctgcttcatgactagcattgcataaatgctagtggttaagataaaaattatactgaaatatgaaaaaaatacatgtacataaagtgcatgcctcatcagtaatctcttctccttcataaagttacgtaaacgggttttgggcttatatatgtacacaagattctgaattaccaatatttggggaaaaggtagctagatggttcaaacttgatactgattctcaatacactgcactttggcattatgcaaatttactctttaatgtactaactgtataatgttttaactacagggatgatttacaacaaggaaatttgacattatatgaagagcaccaagaggaacttgagaaagcccttactccaacagatcaagaactacagaaaaatgataatcgtccaattgtggtctctgtatctggaaagagtggggttggcaagacaactcttgtgagaaatgTgtacaatataatgaagaagaagaatTGttttgatgttcatgctatggagagttttgcacctcatttaacagcccccaacatcctacatcaaattgttcagcagcttacagaagacaacaagaattgtcctagaagcatggtccatgaaatgttggctacagcgttgagagataagaaatacttactggtgattgatggtgaagttagcagaactgaatggaagaacattatcactatgctcactacccttgcagtcggttctactggtaatagaatagtgcatatcagatttgacagaccagaacagtcgtctctctattatcatcatcacattcggttagaacctcttgaaaataatgttgtcatgaaaTtgttccacaagcgattacgaaaccaagacaagcaaggtgatgctggaggtccaatggtattgaagttgaagaaactactccaaTttgatgcacaatatcaaaaacttgaagaataccgtgaagacatatgcaaaatcacggAagggttgcctctggctgttgttcttttAtcaggtcttgtccaaaccaaagagtttCcccatgagtggacagaagtattcaagtatcttagttccaagaaatcaaagcggctcgacaatctactgtccctgtgttttgatgatcttccacatgaactgaaatgttgctatctatactttgctgcatttcctcaaaatgtattggtcgaggcacgcaacttggtgtgtatgtggatggcagagggatttctaacacctagagttggaaagacattggagaaggtgggctacatcttcctgaatgagctgaTttccaggaatctagtcaatcttgttcttgtagatgataattctactaccgggactatgttcatctccatccaaaacaaagtacatgagtttttgcaatctgaagcgcatgaggcaagtttcttggaggtgcatagtggtgatgacatccctactttgacaagtgctcgtcgcctctctctacagaattacacagacaagtatgcggccctagctaatccattgccaaagctacgatccatcttctcttagtttgagcaagagccaaaggaacaagagcccaaaggagtccaaactagacaatgttgcacaccacctcaacagtgggtaaccaacaagaagcagaaagacatcagatctcacataaaaggattgctacaaggatcagagttcctccgtgtcattgacctacaagggattgagattggtgatgagttgccacatgcaataggtagtgttgtgcatctgcagtaccttggaattacatcttgttcattgacagtgatccctccgtccattggaagcctgagtggtctacagacattggatgtcagagaaactaatgttcggaagctcccactgaacttttggttgatgatcaagacactaaggcatgtatttggttttaccctcaaattgcctaaacaaattggcagcatgaagcatatgcagacacttgactcaatagagcttgacaactgtgagaaggatttgattgggacagttggaaagatggtccatctagaaaatttatttgtttggaacattacaactggtaatatggaggctttgtttgctgctctgagcaagctagagaatcttaggaatttggccttgcatggccacaTtattccatcaaccgtgttcatcacaatctcgcttcgccgcctcaagtccatgaagttacaagggaaactaaaatttttatatgagataactggtatggatgtatgccttcctaatctcagcatgcTttcattggagaaaacaaaggtatctcagggattcaTttcaaagcttgctgaactcccatctcttgaaacccttgccttatattctgagtcatacaaggacgagcatcttttattctcttcaaTtggaTttgttagtctgaagaagatcaagcttgatgtaccaacaacgctgaaaactattgagatagagcaaggtgcgcttcatattctcAaggaatttgatatTCtctctcaacgtccccatgtcaaaatcattgcGgaaagacgcatcaaaaagctcattgtctaa

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CDS seq

atgttttgcaggTttccaaggtgggctcaaccatccatgagatatgttgtaacctttacaacgcaagtaccaatgcgacacattctctctaaaaagataaTggctatcaacaccaggcttgaggaaattattcaaaacaaagataggtacaagatggacgatgtgaataagggaatagaagtgacatggaaggcTtcaacgtcaatatccgaaagcaattctgagctggatgatttacaacaaggaaatttgacattatatgaagagcaccaagaggaacttgagaaagcccttactccaacagatcaagaactacagaaaaatgataatcgtccaattgtggtctctgtatctggaaagagtggggttggcaagacaactcttgtgagaaatgTgtacaatataatgaagaagaagaatTGttttgatgttcatgctatggagagttttgcacctcatttaacagcccccaacatcctacatcaaattgttcagcagcttacagaagacaacaagaattgtcctagaagcatggtccatgaaatgttggctacagcgttgagagataagaaatacttactggtgattgatggtgaagttagcagaactgaatggaagaacattatcactatgctcactacccttgcagtcggttctactggtaatagaatagtgcatatcagatttgacagaccagaacagtcgtctctctattatcatcatcacattcggttagaacctcttgaaaataatgttgtcatgaaaTtgttccacaagcgattacgaaaccaagacaagcaaggtgatgctggaggtccaatggtattgaagttgaagaaactactccaaTttgatgcacaatatcaaaaacttgaagaataccgtgaagacatatgcaaaatcacggAagggttgcctctggctgttgttcttttAtcaggtcttgtccaaaccaaagagtttCcccatgagtggacagaagtattcaagtatcttagttccaagaaatcaaagcggctcgacaatctactgtccctgtgttttgatgatcttccacatgaactgaaatgttgctatctatactttgctgcatttcctcaaaatgtattggtcgaggcacgcaacttggtgtgtatgtggatggcagagggatttctaacacctagagttggaaagacattggagaaggtgggctacatcttcctgaatgagctgaTttccaggaatctagtcaatcttgttcttgtagatgataattctactaccgggactatgttcatctccatccaaaacaaagtacatgagtttttgcaatctgaagcgcatgaggcaagtttcttggagtttgagcaagagccaaaggaacaagagcccaaaggagtccaaactagacaatgttgcacaccacctcaacagtgggtaaccaacaagaagcagaaagacatcagatctcacataaaaggattgctacaaggatcagagttcctccgtgtcattgacctacaagggattgagattggtgatgagttgccacatgcaataggtagtgttgtgcatctgcagtaccttggaattacatcttgttcattgacagtgatccctccgtccattggaagcctgagtggtctacagacattggatgtcagagaaactaatgttcggaagctcccactgaacttttggttgatgatcaagacactaaggcatgtatttggttttaccctcaaattgcctaaacaaattggcagcatgaagcatatgcagacacttgactcaatagagcttgacaactgtgagaaggatttgattgggacagttggaaagatggtccatctagaaaatttatttgtttggaacattacaactggtaatatggaggctttgtttgctgctctgagcaagctagagaatcttaggaatttggccttgcatggccacaTtattccatcaaccgtgttcatcacaatctcgcttcgccgcctcaagtccatgaagttacaagggaaactaaaatttttatatgagataactggtatggatgtatgccttcctaatctcagcatgcTttcattggagaaaacaaaggtatctcagggattcaTttcaaagcttgctgaactcccatctcttgaaacccttgccttatattctgagtcatacaaggacgagcatcttttattctcttcaaTtggaTttgttagtctgaagaagatcaagcttgatgtaccaacaacgctgaaaactattgagatagagcaaggtgcgcttcatattctcAaggaatttgatatTCtctctcaacgtccccatgtcaaaatcattgcGgaaagacgcatcaaaaagctcattgtctaa

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Protein seq

MFCRFPRWAQPSMRYVVTFTTQVPMRHILSKKIMAINTRLEEIIQNKDRYKMDDVNKGIEVTWKASTSISESNSELDDLQQGNLTLYEEHQEELEKALTPTDQELQKNDNRPIVVSVSGKSGVGKTTLVRNVYNIMKKKNCFDVHAMESFAPHLTAPNILHQIVQQLTEDNKNCPRSMVHEMLATALRDKKYLLVIDGEVSRTEWKNIITMLTTLAVGSTGNRIVHIRFDRPEQSSLYYHHHIRLEPLENNVVMKLFHKRLRNQDKQGDAGGPMVLKLKKLLQFDAQYQKLEEYREDICKITEGLPLAVVLLSGLVQTKEFPHEWTEVFKYLSSKKSKRLDNLLSLCFDDLPHELKCCYLYFAAFPQNVLVEARNLVCMWMAEGFLTPRVGKTLEKVGYIFLNELISRNLVNLVLVDDNSTTGTMFISIQNKVHEFLQSEAHEASFLEFEQEPKEQEPKGVQTRQCCTPPQQWVTNKKQKDIRSHIKGLLQGSEFLRVIDLQGIEIGDELPHAIGSVVHLQYLGITSCSLTVIPPSIGSLSGLQTLDVRETNVRKLPLNFWLMIKTLRHVFGFTLKLPKQIGSMKHMQTLDSIELDNCEKDLIGTVGKMVHLENLFVWNITTGNMEALFAALSKLENLRNLALHGHIIPSTVFITISLRRLKSMKLQGKLKFLYEITGMDVCLPNLSMLSLEKTKVSQGFISKLAELPSLETLALYSESYKDEHLLFSSIGFVSLKKIKLDVPTTLKTIEIEQGALHILKEFDILSQRPHVKIIAERRIKKLIV

Function Putative disease resistance RPP13-like protein 2 [UniProtKB/Swiss-Prot:Q9STE5]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNaBo_03g0019220 OsNaBo_03g0019220.01 Chr03 15593104 15599558 + NAM
CDS seq

atgttttgcaggTttccaaggtgggctcaaccatccatgagatatgttgtaacctttacaacgcaagtaccaatgcgacacattctctctaaaaagataaTggctatcaacaccaggcttgaggaaattattcaaaacaaagataggtacaagatggacgatgtgaataagggaatagaagtgacatggaaggcTtcaacgtcaatatccgaaagcaattctgagctggatgatttacaacaaggaaatttgacattatatgaagagcaccaagaggaacttgagaaagcccttactccaacagatcaagaactacagaaaaatgataatcgtccaattgtggtctctgtatctggaaagagtggggttggcaagacaactcttgtgagaaatgTgtacaatataatgaagaagaagaatTGttttgatgttcatgctatggagagttttgcacctcatttaacagcccccaacatcctacatcaaattgttcagcagcttacagaagacaacaagaattgtcctagaagcatggtccatgaaatgttggctacagcgttgagagataagaaatacttactggtgattgatggtgaagttagcagaactgaatggaagaacattatcactatgctcactacccttgcagtcggttctactggtaatagaatagtgcatatcagatttgacagaccagaacagtcgtctctctattatcatcatcacattcggttagaacctcttgaaaataatgttgtcatgaaaTtgttccacaagcgattacgaaaccaagacaagcaaggtgatgctggaggtccaatggtattgaagttgaagaaactactccaaTttgatgcacaatatcaaaaacttgaagaataccgtgaagacatatgcaaaatcacggAagggttgcctctggctgttgttcttttAtcaggtcttgtccaaaccaaagagtttCcccatgagtggacagaagtattcaagtatcttagttccaagaaatcaaagcggctcgacaatctactgtccctgtgttttgatgatcttccacatgaactgaaatgttgctatctatactttgctgcatttcctcaaaatgtattggtcgaggcacgcaacttggtgtgtatgtggatggcagagggatttctaacacctagagttggaaagacattggagaaggtgggctacatcttcctgaatgagctgaTttccaggaatctagtcaatcttgttcttgtagatgataattctactaccgggactatgttcatctccatccaaaacaaagtacatgagtttttgcaatctgaagcgcatgaggcaagtttcttggagtttgagcaagagccaaaggaacaagagcccaaaggagtccaaactagacaatgttgcacaccacctcaacagtgggtaaccaacaagaagcagaaagacatcagatctcacataaaaggattgctacaaggatcagagttcctccgtgtcattgacctacaagggattgagattggtgatgagttgccacatgcaataggtagtgttgtgcatctgcagtaccttggaattacatcttgttcattgacagtgatccctccgtccattggaagcctgagtggtctacagacattggatgtcagagaaactaatgttcggaagctcccactgaacttttggttgatgatcaagacactaaggcatgtatttggttttaccctcaaattgcctaaacaaattggcagcatgaagcatatgcagacacttgactcaatagagcttgacaactgtgagaaggatttgattgggacagttggaaagatggtccatctagaaaatttatttgtttggaacattacaactggtaatatggaggctttgtttgctgctctgagcaagctagagaatcttaggaatttggccttgcatggccacaTtattccatcaaccgtgttcatcacaatctcgcttcgccgcctcaagtccatgaagttacaagggaaactaaaatttttatatgagataactggtatggatgtatgccttcctaatctcagcatgcTttcattggagaaaacaaaggtatctcagggattcaTttcaaagcttgctgaactcccatctcttgaaacccttgccttatattctgagtcatacaaggacgagcatcttttattctcttcaaTtggaTttgttagtctgaagaagatcaagcttgatgtaccaacaacgctgaaaactattgagatagagcaaggtgcgcttcatattctcAaggaatttgatatTCtctctcaacgtccccatgtcaaaatcattgcGgaaagacgcatcaaaaagctcattgtctaa

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Protein seq

MFCRFPRWAQPSMRYVVTFTTQVPMRHILSKKIMAINTRLEEIIQNKDRYKMDDVNKGIEVTWKASTSISESNSELDDLQQGNLTLYEEHQEELEKALTPTDQELQKNDNRPIVVSVSGKSGVGKTTLVRNVYNIMKKKNCFDVHAMESFAPHLTAPNILHQIVQQLTEDNKNCPRSMVHEMLATALRDKKYLLVIDGEVSRTEWKNIITMLTTLAVGSTGNRIVHIRFDRPEQSSLYYHHHIRLEPLENNVVMKLFHKRLRNQDKQGDAGGPMVLKLKKLLQFDAQYQKLEEYREDICKITEGLPLAVVLLSGLVQTKEFPHEWTEVFKYLSSKKSKRLDNLLSLCFDDLPHELKCCYLYFAAFPQNVLVEARNLVCMWMAEGFLTPRVGKTLEKVGYIFLNELISRNLVNLVLVDDNSTTGTMFISIQNKVHEFLQSEAHEASFLEFEQEPKEQEPKGVQTRQCCTPPQQWVTNKKQKDIRSHIKGLLQGSEFLRVIDLQGIEIGDELPHAIGSVVHLQYLGITSCSLTVIPPSIGSLSGLQTLDVRETNVRKLPLNFWLMIKTLRHVFGFTLKLPKQIGSMKHMQTLDSIELDNCEKDLIGTVGKMVHLENLFVWNITTGNMEALFAALSKLENLRNLALHGHIIPSTVFITISLRRLKSMKLQGKLKFLYEITGMDVCLPNLSMLSLEKTKVSQGFISKLAELPSLETLALYSESYKDEHLLFSSIGFVSLKKIKLDVPTTLKTIEIEQGALHILKEFDILSQRPHVKIIAERRIKKLIV

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.191611 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_03g0379801 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os03g26260 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os03g0379801 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_03g0019760 RBH 0.151045 0.000000 0.255934
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_03g0019620 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_03g0019600 RBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_03g0019650 RBH 0.000000 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_03g0019420 RBH 2.084281 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_03G0250100 RBH 2.6824365 0.106094 0.042998
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_03g0019280 RBH 0.154373 0.0 0.049735
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_03G0250600 RBH 1.2309535 0.1032755 0.022676
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_03g0019420 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_03g0019430 RBH 0.000000 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_03g0019500 RBH 0.000000 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_03g0019360 RBH 0.495900 0.0 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_03g0019280 RBH 0.046192 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G019370 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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