Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0018710 | OGI:03039070 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:15112657-15114220 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAAAAAAAAATGCAGCAGCGAAACAATGCCGACTCCCATCGGTGCGCACCGCGCGCCCCCGGCTACCTCCGCACCGCCGCCGCGCTCGCCGCCGTCGTCCAGAGCCTCCTCGACGAACCCCGGCCCCGGCCGCGGCCCGGGTCACAGACCCTCCACGCGCAGCTACTCGAGTCCGGCCTCCGCCCCACCGACGACCTCTCCGTCAAGCTCCTCCTCCTCCACCTCCGATGCGGCTCCCACCACAACGCGCGCGCGGTGTTCGACGGAATGCCGGCGCCGACCCACGCCGCGCACAACTACCTCGCCGCGGGGTACTCCCGCCTGGGCCTCCCCGAGGAGGCGCTCGGGATCGTGAGGCGGCTGGCGAGGTGCACGGGGAGGCTGAACGTGTTCGTGCTGTCGATGGCGCTCAAGCTGTCCGCGGCGCTGGCGCTGCCCCGCGCGGTGAGGGAGGTCCACGCCCGCGTGGTGAGGTCGGTCGTCGAGTCCGATGACGTCCTCTTCGCGGCGCTGGTGGACGCCTACGTGAAGAAacgcgtcgcttcggtacgcgcggcgggtgttcgacgtaatgccggtgcggaccgtggtgtcctcgacggcgttgatcgtcgggtgtatgaacgaagggctgtacgaggacgctgaagagatattcaacacgatgaacgagaaggacgtcgtggtgtacaacgccatggtcgaaggctacagcaagacggaggagacggcagagagctcgatggaggtgttcaagtcgatgcatcgggcgaggttccggccgaccgtgtcgacgttcgtgagcgttctcggcgcgtgctcgctcctgtcctcaccggagatcggcgagcaggtgcactgccaggtgatcaagagcagcctctcctccgacatcaaggccgggagcgcgctgctcgacatgtactccaagtgcggccgtgtcgacgacggCcggaggatcttcgaccggatggcggagcggaacgtcatcacatggacctcgatgatcgacgggtacggcaagaacggcctctccgacgaggctctccagctgttcgagcagatgctgcggcggcggcggcggcggcacgacgacgccatccggccgaaccacgccacgttcctgagcgCcctgtcggcgtgcgcgcgcgccgggCtgctgtcccggggccaggaggtgttccagagcatggagcgcgagcacgcgctgaggccgcggatggagcactacgcgtgcatggtggacctgctcggcaggttcggcagcgtccgccgcgcccacgacttcatcagggggatgccggcgaggcccagctccgacgtgtgggcggcgctgctCggggcggccacgctgcacggggacgtggagacggccggcctcgccgcgagggaggtgttcgagctcagccgcgccgccgggaggcaaaggcccggcgcctacatggcgatgtcgaacacgctcgcggcggccgggaaATtggacggcgtgcgtcaggtccgggagatgatgcggcggcgaggggtactgaaagacgctgcctgcagctgggttggctccgagtga
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| CDS seq | ATGCAGCAGCGAAACAATGCCGACTCCCATCGGTGCGCACCGCGCGCCCCCGGCTACCTCCGCACCGCCGCCGCGCTCGCCGCCGTCGTCCAGAGCCTCCTCGACGAACCCCGGCCCCGGCCGCGGCCCGGGTCACAGACCCTCCACGCGCAGCTACTCGAGTCCGGCCTCCGCCCCACCGACGACCTCTCCGTCAAGCTCCTCCTCCTCCACCTCCGATGCGGCTCCCACCACAACGCGCGCGCGGTGTTCGACGGAATGCCGGCGCCGACCCACGCCGCGCACAACTACCTCGCCGCGGGGTACTCCCGCCTGGGCCTCCCCGAGGAGGCGCTCGGGATCGTGAGGCGGCTGGCGAGGTGCACGGGGAGGCTGAACGTGTTCGTGCTGTCGATGGCGCTCAAGCTGTCCGCGGCGCTGGCGCTGCCCCGCGCGGTGAGGGAGGTCCACGCCCGCGTGGTGAGGTCGGTCGTCGAGTCCGATGACGTCCTCTTCGCGGCGCTGGTGGACGCCTACGTGAAGAAacgcgtcgcttcggtacgcgcggcgggtgttcgacgtaatgccgggctgtacgaggacgctgaagagatattcaacacgatgaacgagaaggacgtcgtggtgtacaacgccatggtcgaaggctacagcaagacggaggagacggcagagagctcgatggaggtgttcaagtcgatgcatcgggcgaggttccggccgaccgtgtcgacgttcgtgagcgttctcggcgcgtgctcgctcctgtcctcaccggagatcggcgagcaggtgcactgccaggtgatcaagagcagcctctcctccgacatcaaggccgggagcgcgctgctcgacatgtactccaagtgcggccgtgtcgacgacggCcggaggatcttcgaccggatggcggagcggaacgtcatcacatggacctcgatgatcgacgggtacggcaagaacggcctctccgacgaggctctccagctgttcgagcagatgctgcggcggcggcggcggcggcacgacgacgccatccggccgaaccacgccacgttcctgagcgCcctgtcggcgtgcgcgcgcgccgggCtgctgtcccggggccaggaggtgttccagagcatggagcgcgagcacgcgctgaggccgcggatggagcactacgcgtgcatggtggacctgctcggcaggttcggcagcgtccgccgcgcccacgacttcatcagggggatgccggcgaggcccagctccgacgtgtgggcggcgctgctCggggcggccacgctgcacggggacgtggagacggccggcctcgccgcgagggaggtgttcgagctcagccgcgccgccgggaggcaaaggcccggcgcctacatggcgatgtcgaacacgctcgcggcggccgggaaATtggacggcgtgcgtcaggtccgggagatgatgcggcggcgaggggtactgaaagacgctgcctgcagctgggttggctccgagtga
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| Protein seq | MQQRNNADSHRCAPRAPGYLRTAAALAAVVQSLLDEPRPRPRPGSQTLHAQLLESGLRPTDDLSVKLLLLHLRCGSHHNARAVFDGMPAPTHAAHNYLAAGYSRLGLPEEALGIVRRLARCTGRLNVFVLSMALKLSAALALPRAVREVHARVVRSVVESDDVLFAALVDAYVKKRVASVRAAGVRRNAGLYEDAEEIFNTMNEKDVVVYNAMVEGYSKTEETAESSMEVFKSMHRARFRPTVSTFVSVLGACSLLSSPEIGEQVHCQVIKSSLSSDIKAGSALLDMYSKCGRVDDGRRIFDRMAERNVITWTSMIDGYGKNGLSDEALQLFEQMLRRRRRRHDDAIRPNHATFLSALSACARAGLLSRGQEVFQSMEREHALRPRMEHYACMVDLLGRFGSVRRAHDFIRGMPARPSSDVWAALLGAATLHGDVETAGLAAREVFELSRAAGRQRPGAYMAMSNTLAAAGKLDGVRQVREMMRRRGVLKDAACSWVGSE |
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| Function | Pentatricopeptide repeat-containing protein At1g28690, mitochondrial [UniProtKB/Swiss-Prot:Q1PFQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0018710 | OsNaBo_03g0018710.01 | Chr03 | 15112657 | 15114220 | + | NAM | ||
| CDS seq | ATGCAGCAGCGAAACAATGCCGACTCCCATCGGTGCGCACCGCGCGCCCCCGGCTACCTCCGCACCGCCGCCGCGCTCGCCGCCGTCGTCCAGAGCCTCCTCGACGAACCCCGGCCCCGGCCGCGGCCCGGGTCACAGACCCTCCACGCGCAGCTACTCGAGTCCGGCCTCCGCCCCACCGACGACCTCTCCGTCAAGCTCCTCCTCCTCCACCTCCGATGCGGCTCCCACCACAACGCGCGCGCGGTGTTCGACGGAATGCCGGCGCCGACCCACGCCGCGCACAACTACCTCGCCGCGGGGTACTCCCGCCTGGGCCTCCCCGAGGAGGCGCTCGGGATCGTGAGGCGGCTGGCGAGGTGCACGGGGAGGCTGAACGTGTTCGTGCTGTCGATGGCGCTCAAGCTGTCCGCGGCGCTGGCGCTGCCCCGCGCGGTGAGGGAGGTCCACGCCCGCGTGGTGAGGTCGGTCGTCGAGTCCGATGACGTCCTCTTCGCGGCGCTGGTGGACGCCTACGTGAAGAAacgcgtcgcttcggtacgcgcggcgggtgttcgacgtaatgccgggctgtacgaggacgctgaagagatattcaacacgatgaacgagaaggacgtcgtggtgtacaacgccatggtcgaaggctacagcaagacggaggagacggcagagagctcgatggaggtgttcaagtcgatgcatcgggcgaggttccggccgaccgtgtcgacgttcgtgagcgttctcggcgcgtgctcgctcctgtcctcaccggagatcggcgagcaggtgcactgccaggtgatcaagagcagcctctcctccgacatcaaggccgggagcgcgctgctcgacatgtactccaagtgcggccgtgtcgacgacggCcggaggatcttcgaccggatggcggagcggaacgtcatcacatggacctcgatgatcgacgggtacggcaagaacggcctctccgacgaggctctccagctgttcgagcagatgctgcggcggcggcggcggcggcacgacgacgccatccggccgaaccacgccacgttcctgagcgCcctgtcggcgtgcgcgcgcgccgggCtgctgtcccggggccaggaggtgttccagagcatggagcgcgagcacgcgctgaggccgcggatggagcactacgcgtgcatggtggacctgctcggcaggttcggcagcgtccgccgcgcccacgacttcatcagggggatgccggcgaggcccagctccgacgtgtgggcggcgctgctCggggcggccacgctgcacggggacgtggagacggccggcctcgccgcgagggaggtgttcgagctcagccgcgccgccgggaggcaaaggcccggcgcctacatggcgatgtcgaacacgctcgcggcggccgggaaATtggacggcgtgcgtcaggtccgggagatgatgcggcggcgaggggtactgaaagacgctgcctgcagctgggttggctccgagtga
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| Protein seq | MQQRNNADSHRCAPRAPGYLRTAAALAAVVQSLLDEPRPRPRPGSQTLHAQLLESGLRPTDDLSVKLLLLHLRCGSHHNARAVFDGMPAPTHAAHNYLAAGYSRLGLPEEALGIVRRLARCTGRLNVFVLSMALKLSAALALPRAVREVHARVVRSVVESDDVLFAALVDAYVKKRVASVRAAGVRRNAGLYEDAEEIFNTMNEKDVVVYNAMVEGYSKTEETAESSMEVFKSMHRARFRPTVSTFVSVLGACSLLSSPEIGEQVHCQVIKSSLSSDIKAGSALLDMYSKCGRVDDGRRIFDRMAERNVITWTSMIDGYGKNGLSDEALQLFEQMLRRRRRRHDDAIRPNHATFLSALSACARAGLLSRGQEVFQSMEREHALRPRMEHYACMVDLLGRFGSVRRAHDFIRGMPARPSSDVWAALLGAATLHGDVETAGLAAREVFELSRAAGRQRPGAYMAMSNTLAAAGKLDGVRQVREMMRRRGVLKDAACSWVGSE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 5.150996 | 0.331062 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0369700 | RBH | 0.134961 | 0.000000 | 0.327675 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g25380 | RBH | 0.078137 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0369700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0019170 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0019000 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0019030 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0019080 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0018870 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0241200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0018730 | RBH | 0.000000 | 0.000000 | 0.077470 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0241200 | RBH | 0.347211 | 0.5335745 | 2.1345855 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0018870 | RBH | 0.053237 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0018900 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0018960 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0018830 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0018740 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G018850 | RBH | 0.000000 | 1.129532 | 0.226829 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0024390 | RBH | 0.0 | 0.0 | 0.512011 |
