Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0018140 | OGI:03037760 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:14627926-14630390 | ||||||||
| Gene Symbol | TPS13, OsTPS13 | ||||||||||
| DNA seq | ctaatacacgggaaggggatcaagaaagaggttggagacgagacccttgaggtcgccaccgacggtgtacccgtccctgccgccgaggtagatcacctccaccgtcctcgccaggttcaccatcagccgcgccgccggcagcagggcggcatccatcgtcccgacggcggcgcactccccgttgatcgtcctccacgcgcgctccgccagcgcggccaccgccgccacggcctcccccccgcccacgccgcgctccgccatgtagcactccaccgtgctcgccatgtccccgccgctcttcccgatcctgtaggaggcggtgtcgttgaggaagcgggcgagctccccgccggcgcggaccagggcggggacggggacgctggtcgcccactcgaacgcctccttggttgtcgccgccgcatcgccgctgtcgcgcacgccgagcagcagcaccggtgccatcgccgggaagccggacgacatgagagagatatccaggtgctcggcgaagctgggcatgtacttgtcgcttgaccattgggcctcacggaggtagtattccgacatctgcttgaactgtgtacatgtatgcatgtgcaggaaaattaatcaaaatgtgtggacgagggcacgaatatcactttagtatgccTttttttttttttggagaacaagattttaccgtagttttcgcgtaagacatgctgtacttctcatccggctccaagctgtcctccatctcatcaaagtcattgagcaactttatgtaaaagatacgcaaatattctggtagaatagaaaccgcacttttgtcccatctgcatagatatatgtatcgaggatatatttatattagctagatcattgattagtaatgctcgttggcaaattgacaacctactaggccatcattaactagcaaatttctacctctgcatagcttcgttaagcttgtaacactcctccagggtggcgtggatatcgtaagtgtcatccatcagagtcatcagttgaaacaccttcgtgaatatgatccgcgagcgagagtacttctccccgtggaatatggcacaggaccagaagtaagactctactagacgatctcgagcgtagctcagctttacgctgtcataaagttgtctccaccacctgtcaatcatattcacgcacgcacatatttactagaccacgtaattgtatttatgctaactgtgcagtgaagtgaagtagagtaattttatgatagtttttactgacagtaatatatattccactatcataatctgctgatgagtaaaagcagggctattgcttataacacagttgcgtgaagcagagaacgacaaggacagtgaagcaagaaatgattgtggaagaaaaaaataatatgcataagagaaacttaaatgattacaaggagagggtcttgagctccttgaggtaaagaggtctgataagctcgaagtccagcctcgcgagctccagcacaacgccgtcgtgcgcctcctcccgctcgtactcggtgatgtagcgcatcgtctccagcagcttgggcgcccgtgcgagagggatgtcgagggcgcgggagacctgctcggccatcggcgatcccagcttaccttgcaaggacttgaggctccgtctcgagaacgcgatggcgtcgtcgagcgccgcttcttcgccgggcatggcgaggtgcgctgcgttgtagaggcttagcaggccccttgcgtccgtgctcaggctttctctgaaacaacccgtgctatctttgaacttgtcgaatacatctgcatgaacaaatttctagctgtaagggtgtacacactagtactatatatgctccagggattatatttatccaaatgaatcagagatgggagagatgtgtgttcaaataacaagctttagatcgaaccttgtttgatctttgtcgtattttagaattcatttagtgtttttttcaccgtattttttttcaacctcagtttttggactgttatatactgaatttatttccattcttttgaTtttgtgtcccaatttatacgctcctagctatcaatgaaaatgtcttctaactgattcggcaattatattcattctatatcaatatgtacatatatataacaaaatattctcctacaaaactgcagagagattgaattatactccgagttacctgcagataccaagaaaccatgctggcgaagtagacgaaacctaagggattcaaggtggagcaagtcagcagcagcaacgctgtcggcgtgctccttatggtgcaataataatacatgctgtaacgctacggtgatctcgtcgcggaagtggtcgtctatgtggaggcgttcgagcacgtccactagcatcaccgtgtaggccatactcgtggccttcgacagcttgcagcgcacctgcctctttagctgatccacatgttccctcatccacttctctgacat
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| CDS seq | atgtcagagaagtggatgagggaacatgtggatcagctaaagaggcaggtgcgctgcaagctgtcgaaggccacgagtatggcctacacggtgatgctagtggacgtgctcgaacgcctccacatagacgaccacttccgcgacgagatcaccgtagcgttacagcatgtattattattgcaccataaggagcacgccgacagcgttgctgctgctgacttgctccaccttgaatcccttaggtttcgtctacttcgccagcatggtttcttggtatctgcagatgtattcgacaagttcaaagatagcacgggttgtttcagagaaagcctgagcacggacgcaaggggcctgctaagcctctacaacgcagcgcacctcgccatgcccggcgaagaagcggcgctcgacgacgccatcgcgttctcgagacggagcctcaagtccttgcaaggtaagctgggatcgccgatggccgagcaggtctcccgcgccctcgacatccctctcgcacgggcgcccaagctgctggagacgatgcgctacatcaccgagtacgagcgggaggaggcgcacgacggcgttgtgctggagctcgcgaggctggacttcgagcttatcagacctctttacctcaaggagctcaagaccctctccttgtggtggagacaactttatgacagcgtaaagctgagctacgctcgagatcgtctagtagagtcttacttctggtcctgtgccatattccacggggagaagtactctcgctcgcggatcatattcacgaaggtgtttcaactgatgactctgatggatgacacttacgatatccacgccaccctggaggagtgttacaagcttaacgaagctatgcagagatgggacaaaagtgcggtttctattctaccagaatatttgcgtatcttttacataaagttgctcaatgactttgatgagatggaggacagcttggagccggatgagaagtacagcatgtcttacgcgaaaactacgttcaagcagatgtcggaatactacctccgtgaggcccaatggtcaagcgacaagtacatgcccagcttcgccgagcacctggatatctctctcatgtcgtccggcttcccggcgatggcaccggtgctgctgctcggcgtgcgcgacagcggcgatgcggcggcgacaaccaaggaggcgttcgagtgggcgaccagcgtccccgtccccgccctggtccgcgccggcggggagctcgcccgcttcctcaacgacaccgcctcctacaggatcgggaagagcggcggggacatggcgagcacggtggagtgctacatggcggagcgcggcgtgggcgggggggaggccgtggcggcggtggccgcgctggcggagcgcgcgtggaggacgatcaacggggagtgcgccgccgtcgggacgatggatgccgccctgctgccggcggcgcggctgatggtgaacctggcgaggacggtggaggtgatctacctcggcggcagggacgggtacaccgtcggtggcgacctcaagggtctcgtctccaacctctttcttgatccccttcccgtgtattag
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| Protein seq | MSEKWMREHVDQLKRQVRCKLSKATSMAYTVMLVDVLERLHIDDHFRDEITVALQHVLLLHHKEHADSVAAADLLHLESLRFRLLRQHGFLVSADVFDKFKDSTGCFRESLSTDARGLLSLYNAAHLAMPGEEAALDDAIAFSRRSLKSLQGKLGSPMAEQVSRALDIPLARAPKLLETMRYITEYEREEAHDGVVLELARLDFELIRPLYLKELKTLSLWWRQLYDSVKLSYARDRLVESYFWSCAIFHGEKYSRSRIIFTKVFQLMTLMDDTYDIHATLEECYKLNEAMQRWDKSAVSILPEYLRIFYIKLLNDFDEMEDSLEPDEKYSMSYAKTTFKQMSEYYLREAQWSSDKYMPSFAEHLDISLMSSGFPAMAPVLLLGVRDSGDAAATTKEAFEWATSVPVPALVRAGGELARFLNDTASYRIGKSGGDMASTVECYMAERGVGGGEAVAAVAALAERAWRTINGECAAVGTMDAALLPAARLMVNLARTVEVIYLGGRDGYTVGGDLKGLVSNLFLDPLPVY |
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| Function | Eudesmanediol synthase [UniProtKB/Swiss-Prot:A0A3L6G2C1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0018140 | OsNaBo_03g0018140.01 | Chr03 | 14627926 | 14630390 | - | NAM | ||
| CDS seq | atgtcagagaagtggatgagggaacatgtggatcagctaaagaggcaggtgcgctgcaagctgtcgaaggccacgagtatggcctacacggtgatgctagtggacgtgctcgaacgcctccacatagacgaccacttccgcgacgagatcaccgtagcgttacagcatgtattattattgcaccataaggagcacgccgacagcgttgctgctgctgacttgctccaccttgaatcccttaggtttcgtctacttcgccagcatggtttcttggtatctgcagatgtattcgacaagttcaaagatagcacgggttgtttcagagaaagcctgagcacggacgcaaggggcctgctaagcctctacaacgcagcgcacctcgccatgcccggcgaagaagcggcgctcgacgacgccatcgcgttctcgagacggagcctcaagtccttgcaaggtaagctgggatcgccgatggccgagcaggtctcccgcgccctcgacatccctctcgcacgggcgcccaagctgctggagacgatgcgctacatcaccgagtacgagcgggaggaggcgcacgacggcgttgtgctggagctcgcgaggctggacttcgagcttatcagacctctttacctcaaggagctcaagaccctctccttgtggtggagacaactttatgacagcgtaaagctgagctacgctcgagatcgtctagtagagtcttacttctggtcctgtgccatattccacggggagaagtactctcgctcgcggatcatattcacgaaggtgtttcaactgatgactctgatggatgacacttacgatatccacgccaccctggaggagtgttacaagcttaacgaagctatgcagagatgggacaaaagtgcggtttctattctaccagaatatttgcgtatcttttacataaagttgctcaatgactttgatgagatggaggacagcttggagccggatgagaagtacagcatgtcttacgcgaaaactacgttcaagcagatgtcggaatactacctccgtgaggcccaatggtcaagcgacaagtacatgcccagcttcgccgagcacctggatatctctctcatgtcgtccggcttcccggcgatggcaccggtgctgctgctcggcgtgcgcgacagcggcgatgcggcggcgacaaccaaggaggcgttcgagtgggcgaccagcgtccccgtccccgccctggtccgcgccggcggggagctcgcccgcttcctcaacgacaccgcctcctacaggatcgggaagagcggcggggacatggcgagcacggtggagtgctacatggcggagcgcggcgtgggcgggggggaggccgtggcggcggtggccgcgctggcggagcgcgcgtggaggacgatcaacggggagtgcgccgccgtcgggacgatggatgccgccctgctgccggcggcgcggctgatggtgaacctggcgaggacggtggaggtgatctacctcggcggcagggacgggtacaccgtcggtggcgacctcaagggtctcgtctccaacctctttcttgatccccttcccgtgtattag
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| Protein seq | MSEKWMREHVDQLKRQVRCKLSKATSMAYTVMLVDVLERLHIDDHFRDEITVALQHVLLLHHKEHADSVAAADLLHLESLRFRLLRQHGFLVSADVFDKFKDSTGCFRESLSTDARGLLSLYNAAHLAMPGEEAALDDAIAFSRRSLKSLQGKLGSPMAEQVSRALDIPLARAPKLLETMRYITEYEREEAHDGVVLELARLDFELIRPLYLKELKTLSLWWRQLYDSVKLSYARDRLVESYFWSCAIFHGEKYSRSRIIFTKVFQLMTLMDDTYDIHATLEECYKLNEAMQRWDKSAVSILPEYLRIFYIKLLNDFDEMEDSLEPDEKYSMSYAKTTFKQMSEYYLREAQWSSDKYMPSFAEHLDISLMSSGFPAMAPVLLLGVRDSGDAAATTKEAFEWATSVPVPALVRAGGELARFLNDTASYRIGKSGGDMASTVECYMAERGVGGGEAVAAVAALAERAWRTINGECAAVGTMDAALLPAARLMVNLARTVEVIYLGGRDGYTVGGDLKGLVSNLFLDPLPVY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0361700 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g24650 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0361700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0018600 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0018420 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0018460 | RBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0018490 | RBH | 0.0 | 0.034202 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0018250 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0233800 | RBH | 0.1069285 | 0.857658 | 0.075035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0018080 | RBH | 0.0 | 0.0 | 0.076631 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0234700 | RBH | 0.0543815 | 0.1589575 | 0.0696405 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0018320 | RBH | 0.0 | 0.076565 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0018340 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0018420 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0018260 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0018180 | RBH | 0.0 | 1.248240 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G018200 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
