Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0017220 | OGI:03034620 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:13371382-13375505 | ||||||||
| Gene Symbol | OsCDKC;2, OsCDK2 | ||||||||||
| DNA seq | ggaaaattcaggtcaccatgcaacagaccaatcaaaacacaagatttgctttggatcgatgaggaatgattacacaggttgcaattgaagaaaggtgttacaatggaaggggatgtcctgaaatgctagagatctaagcttccactcaaatgaatctaacaccaaatgcaccagggctataagaattgaaaaacagaacctaatgtacacaggtaaactacctgagctccctccacagcctatacaaccgatgttcgaaaaataatccaatgacaataagtcaagaagaaatcaagttatcatcgcatgcctcgtttgcgaaacagcgcatggtagctgctgaggagtattttctccataactgaagactctgtctataaatattactcttcagttccttttccttaccgagcacgggcagtggatggttgttttgatgagcggccaaacttgtgtttccatttctgtttcccaactgcagagagatcagccaaaggaccggaccaagtaggaacagagcttttctcttgtgtaaatacagtgctaaacgaagagggatcttggggttcgtataacgggtccatgtgatttgtagaaaccaaagagaccgcaccatcctgatgcggaggaggaaacttttcactcttgctttttgcatttgcatgtgttactaatctccttttctgtaagatataaataaatgggacaaattagagacattgcaaaatttacattaagagagtgccgggctccattttgggccatagtaaatcaaatgagaccagtataggtaagacaagaaaataaagtggtgataaagtgttactgcgacggagatgagactaagcaagtggtttcaccacctccaccttaaatttagatcgctagcctagtctttaagtaaaacagctcaaagaaacaaaaactaaaacactactggaattagtcagggagcaagtatgttcacatacatcgatatttatttgaagttcagcatttgcctctggagccggtactgccctaggtcgatcgcgcgtctttgtcttcttagctccatcattagtcctaccgccagcagctctcaaactgttgatcatgccatgaataggtcaggtagcaatcaaatatttctatacacgctcaactcacatgagagcatggacagaaaacatgaatcaaacatcaaatatactaggatatgtgggcatttggatcacttagtgagcaaaaattctaaatagctgagcccagatggtgagagactgactatcagcccaacgatgaggcatgtgtcagacaaattctgtgaaatccagggacattagtaccacagcagtatgtctacttaaagtttcacctaaatcagcacttgcattgcactaaaattacatttgggcaatgctttcataatttgattatatataactttgctgcatgaacattgtgtgccatctctttaggatatatttctatgctaataatattgcttacgggaaaaaaaaacatccatattaataccaaatatcaacaaacttttggtgaactttactgttttagcacttattagtcattttcttgtaatccgacaaaagagagtggcttccattctttttataaaaaaaacaaaagaaagagagagtggccctgttatctgaagacagcactttgtacaaatgtttctttcgaaaatagtgaaattgtttttagtttattgaactattccatatgcatacccaaatattagaataaatacatgttttttcttgtcgtaggtattaaacccgagcaagcactcaagtatccaacctaggtccccagaaaaataatgtgccatttgataagcaacagttatatgtttaaagttaaagatgctatttctcaaatgccaatttaaaaagaaagtgctacaaccacagagtgtccagtactagagagacagccaaggaccaaagcgaataacaaacaaataataaaactaatgagtatcaaggtgacAaaccgtctggcttcttcatctcttcgttttgcatccatttctttgcttggaggatatgctgggagacttgatggttcacatgcataaggttcagttgtaaagaactgcatagattgtaataagcaattctttagtaaaagtgtaaaacaatgctacataatttcaacaaagatgacaataaacagatctacttcacacattatccagtgagatatgtcattcaaaccaaatgtatgctattgaaattcgaaaatcagacttgcagttatagagtgctactatagcctagattgataatatctggtaggaagatgcttccatgctctttataaatcaaaaaatcatactttattaagcaaatagaaggcctaaattgcagccacctctaaataagatacaatggtccaaatgagatcacaagcatcatagtgtcatattgcacaaaagaattagtcatgtcatacttcttggaatatgggataggatgcagaaaaaatatagtggtcataatgcttgcaagtaaattattggatattggctaaatctacactagtagctacccagaacaaaatctagccaaagcaccatgttctgaaaccccaattgcaaactaagttattgcaatgaaaacgtaaatcacctacacccaagattttctaaaaatattgtgcttatagagggcaatgactttgaggcaaacacagaatcgcagatttcagaacttcaaactgtgtcgtaagacaccaaagccaacttacatcacttcttaatgcagaagtcgctgttaaacgatcagctggatcaattgcgagcagtgtttcaatcaatcgcagtgctgactgtggaaaatctttgtaagtctctgatattcgccttttgtatggttgttgaggcttAaatattgttgcatgaggtagcttggactttttccaatattcttctgtgggggagccgcacagcttaaaaattttatgcagctgttccacctaaaagggacagatgattattaaattaaataaacatggaacataaatacaattggcattcattagattggctggaatgaacaacattacgtgcatgaacagtgcaacaggtcatattggatctagcataatctcaagtacgaataaaaaatatagtacaaaataagggttcctttggaacacgggattgaaaaaacgaaggaataagaaagtcacaagattgcaaaacacgggaatcagatgagtgagatagaatcaaaaagaaattttccaagaggttggagctcttgctaattttcctccgaaatctccataggattgtacattccataggaatttcaaaggaaaagataggatttaatcctttgtttcaaatgccttcctaggattttttccaataggatcgaaatcctccatatttcctatgtttttcctacaaaccgaagggggcctaaaagtgtaatacgttgaacatgtggtactacagataaagttagaacttttggtagagcaacgtttccagtttccacatgaaaagctactggttttatcaaccactatgtttacctaaattgaaactagtttagcactccaaggcctccgaccaaattgaatactgtttcaaggcatttcaaactgataattagacaaatcagcatgctgttgctaacctcagtacggcctggcataataggcctcccagccaacaactcggctagaatacaccccgcgctccacaggtcaacgcccaccccataatccgtggagcccaaaagcaactccggtgggcggtaccacagcgtcaccaccctgctcgtcatcggctgattcttgttgggatcgaacaacgacgccaggccgaaatctgcgatcttcagcatgccattgttatccaacagcaggttcgaccccttgatgtcgcggtgcagcactccattgttgtggcaatgctccagcccggacagcagctggtgcatgtagcacttaacctgtatgtcagcatgccatggaaaacctcaattaatttcacgacattgcgtgctggaacatgaggctgcacaaagatcttggcggggggagacctgtggctcggtgaagctgatgtcggggctggcggcgaggccggcgaggtcgtgctccat
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| CDS seq | atggagcacgacctcgccggcctcgccgccagccccgacatcagcttcaccgagccacaggttaagtgctacatgcaccagctgctgtccgggctggagcattgccacaacaatggagtgctgcaccgcgacatcaaggggtcgaacctgctgttggataacaatggcatgctgaagatcgcagatttcggcctggcgtcgttgttcgatcccaacaagaatcagccgatgacgagcagggtggtgacgctgtggtaccgcccaccggagttgcttttgggctccacggattatggggtgggcgttgacctgtggagcgcggggtgtattctagccgagttgttggctgggaggcctattatgccaggccgtactgaggtggaacagctgcataaaatttttaagctgtgcggctcccccacagaagaatattggaaaaagtccaagctacctcatgcaacaatattTaagcctcaacaaccatacaaaaggcgaatatcagagacttacaaagattttccacagtcagcactgcgattgattgaaacactgctcgcaattgatccagctgatcgtttaacagcgacttctgcattaagaagtgatttctttacaactgaaccttatgcatgtgaaccatcaagtctcccagcatatcctccaagcaaagaaatggatgcaaaacgaagagatgaagaagccagacgtttgagagctgctggcggtaggactaatgatggagctaagaagacaaagacgcgcgatcgacctagggcagtaccggctccagaggcaaatgctgaacttcaaataaatatcgataaaaggagattagtaacacatgcaaatgcaaaaagcaagagtgaaaagtttcctcctccgcatcaggatggtgcggtctctttggtttctacaaatcacatggacccgttatacgaaccccaagatccctcttcgtttagcactgtatttacacaagagaaaagctctgttcctacttggtccggtcctttggctgatctctctgcagttgggaaacagaaatggaaacacaagtttggccgctcatcaaaacaaccatccactgcccgtgctcggtaa
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| Protein seq | MEHDLAGLAASPDISFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLLDNNGMLKIADFGLASLFDPNKNQPMTSRVVTLWYRPPELLLGSTDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPTEEYWKKSKLPHATIFKPQQPYKRRISETYKDFPQSALRLIETLLAIDPADRLTATSALRSDFFTTEPYACEPSSLPAYPPSKEMDAKRRDEEARRLRAAGGRTNDGAKKTKTRDRPRAVPAPEANAELQINIDKRRLVTHANAKSKSEKFPPPHQDGAVSLVSTNHMDPLYEPQDPSSFSTVFTQEKSSVPTWSGPLADLSAVGKQKWKHKFGRSSKQPSTARAR |
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| Function | Probable serine/threonine-protein kinase At1g54610 [UniProtKB/Swiss-Prot:Q9ZVM9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0017220 | OsNaBo_03g0017220.01 | Chr03 | 13371382 | 13375505 | - | NAM | ||
| CDS seq | atggagcacgacctcgccggcctcgccgccagccccgacatcagcttcaccgagccacaggttaagtgctacatgcaccagctgctgtccgggctggagcattgccacaacaatggagtgctgcaccgcgacatcaaggggtcgaacctgctgttggataacaatggcatgctgaagatcgcagatttcggcctggcgtcgttgttcgatcccaacaagaatcagccgatgacgagcagggtggtgacgctgtggtaccgcccaccggagttgcttttgggctccacggattatggggtgggcgttgacctgtggagcgcggggtgtattctagccgagttgttggctgggaggcctattatgccaggccgtactgaggtggaacagctgcataaaatttttaagctgtgcggctcccccacagaagaatattggaaaaagtccaagctacctcatgcaacaatattTaagcctcaacaaccatacaaaaggcgaatatcagagacttacaaagattttccacagtcagcactgcgattgattgaaacactgctcgcaattgatccagctgatcgtttaacagcgacttctgcattaagaagtgatttctttacaactgaaccttatgcatgtgaaccatcaagtctcccagcatatcctccaagcaaagaaatggatgcaaaacgaagagatgaagaagccagacgtttgagagctgctggcggtaggactaatgatggagctaagaagacaaagacgcgcgatcgacctagggcagtaccggctccagaggcaaatgctgaacttcaaataaatatcgataaaaggagattagtaacacatgcaaatgcaaaaagcaagagtgaaaagtttcctcctccgcatcaggatggtgcggtctctttggtttctacaaatcacatggacccgttatacgaaccccaagatccctcttcgtttagcactgtatttacacaagagaaaagctctgttcctacttggtccggtcctttggctgatctctctgcagttgggaaacagaaatggaaacacaagtttggccgctcatcaaaacaaccatccactgcccgtgctcggtaa
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| Protein seq | MEHDLAGLAASPDISFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLLDNNGMLKIADFGLASLFDPNKNQPMTSRVVTLWYRPPELLLGSTDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPTEEYWKKSKLPHATIFKPQQPYKRRISETYKDFPQSALRLIETLLAIDPADRLTATSALRSDFFTTEPYACEPSSLPAYPPSKEMDAKRRDEEARRLRAAGGRTNDGAKKTKTRDRPRAVPAPEANAELQINIDKRRLVTHANAKSKSEKFPPPHQDGAVSLVSTNHMDPLYEPQDPSSFSTVFTQEKSSVPTWSGPLADLSAVGKQKWKHKFGRSSKQPSTARAR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.733281 | 7.871140 | 2.989901 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0349200 | RBH | 0.734006 | 0.440129 | 2.359171 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g22700 | RBH | 0.501098 | 0.298841 | 0.717525 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0847600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0017690 | RBH | 0.450364 | 2.303894 | 2.541601 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0017530 | RBH | 0.105907 | 2.104862 | 1.897220 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0017540 | RBH | 1.428597 | 18.101717 | 6.706691 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0017540 | RBH | 0.095554 | 0.540320 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0017330 | RBH | 2.296484 | 13.772331 | 11.505061 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0215300 | RBH | 6.4693385 | 14.042992 | 11.720259 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0017180 | RBH | 0.0 | 1.007538 | 0.360205 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0219700 | RBH | 5.4462335 | 7.1713305 | 19.1086195 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0017410 | RBH | 0.000000 | 0.164343 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0017440 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0017500 | RBH | 0.0 | 25.046883 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0017380 | RBH | 0.289607 | 1.094852 | 0.284935 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0017280 | RBH | 0.000000 | 6.187318 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G017250 | RBH | 0.240615 | 2.609637 | 2.347794 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026530 | RBH | 1.046459 | 20.756241 | 17.063074 |
