Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0016400 | OGI:03033130 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:12705627-12708632 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcactagcacctgcgtcgaatcgctcgaccgcacgacgagagcctctcatcctctcgccaccgaaccccatccatcgcgtcgtctcttcctccccagctcagcgctctcgtcggtgcgcctatggcgtctcccttccactcctccttcccgctctccccgccatcctcctgccatggaggaggcgtcctccagtttgccactcgagccgcgactagtcctttcgcgtcctactgcagagcgccggcggcacgcgacggcggcgacgaccacgaccacgacgcggggatactgcaggcgctcgcgttcaacggcaacgggagcgtccatggcgttcttgatcctggtgtcgaggaggaggaggaggcgggtgacggcggcggcggcgggaggcggggcacgcggatccgggcgagggactgcgcgaagcggatcatgggactccccgtcgaggagcgggtcaaggtgctcgacctcctgcagcgcgacgacggggcgctcaccgtgtccgactacaacgacatcctctccgcgctcgccatggccggcgaccacgactccgcggtcgcgctcttccgggcgctccggcccaacggcgtcacgcccgacgcgcagtcctacgccaccgccgtgcagtgcctctgccggaagggcgcccccgacgaggccaaggaggcgctcgacgagatggtggcgcgcggcttccgccccaccgtcgccaccttctccgccgtcgtcggctgcctctgcaagcgcggacgcgtcaccagggccatggaggtgttcgacaccatgcgcgccgtcggctgcgagcccaccatccgcacctacaacagcctcatcggcgggctctgctacgtcgggcggctcgaggaggcgctggacctgctcaacaagctcaaggagtcgccgaagcagacgccggacatctacacgttcaccattgtcctcgacgggttctgcaaggtcgggcggacggacgaggccacgcccatcttccacgacgccgtcAGGgatggcctctcgccgacgatattcacctacaacgccctgctcaacggccactgcaaggaagggaatccgctcaaggcgtacagcctgctcatggagatgtgcggcaacgccgcctgcccgccggacaggatcagcttcagcatcgtgctgcaggcgctgctgcgcgccggcgagacctccgcggcgtggcaggcgtacaagcggatggagcgcgccgggttcgaggccgacggccgcgccctggacacgctcgcgcggggcctgtgccgtcagtgcgcggcgaacgtcgcggcgctcgccgacgcgagggaggtgttcggcaagctggtggcgtccgggcacgagccggtgtcgtacacctactgcctgatggcgcaggcgctggcgcgcggcggcgaggtggacgcggccgtgtcgctcctgggtgagatggcgcgcaggggttacgcgctgcggaagcgcgcgtacaccgacgtcgtccgcgcgctgtgcgagcgtggccgggcgcgcgacgcgctgcgggtgctggcgctggtgatcgccagggacttcgtgcccggccggaacgcgttcgacgcgctgctcggcgagctcgcccggcaggggaggtggcccgacgcgatggccgtgtacgccgccgccgtgaagcgcggcgtcctcgtctccttgaagcggcatagcaaggaggccctgctggtgcaggagcagacggaaacgcgagaatcgtcggtgcaaccgtgcaactgagcgttccgcagtgaaaaattttgctgcaaaattcacacattttttggggggactctattgttggaagctccggaatctgcaccgatcaaaggcgtgccattgtttgcatgcgaatacacgaccagttttggattttcgttgacaattcgggaggggagatggcgaaaaccaatttctgcataatcgcttcgacatgatcggctcaaccggccggaccatcacgctacatcagcaccagtgcaccagcactttggccctggtagcaacgaacgccaccaccctttccggaggcaaactttgttcggtcattctccggtgaggctataacttgcttcagttgcttgttgtgacctgtaaggctgtataagtagaacataattgggattggagcggattctgattcttcacgctgattttttcgcagctagtacaaatttgtaaaaaatgcgctgatttatcagaagccgaaatgctcaactcagcaaaagaacatcaaagagcttaggacaactgtttataatcaggcacgatgaatgatcatgtatcgacgccaaaaagtaaaagcagaagcatctttatttattaacgcgacgccgaagcaacacgaagagcgcaaacataagttgagcagacacgcccatggttacaaaagtttggacagcaaaacaaagttaaccagctgcatacctaagcatggattgatagatagctcacatgcttaatcagagttaagcagctagcttacgcgggcttagttactacttcgccggcacctgctcgataacccatggcttcctctgcttcgccgccttcttcttctcctcccacctctcgtcctcgggctcctcctcccacttcttcttcttcttcttctccggccaggacggcaggatcaccgcctcattctgcgccagcaccagcttcctcatcgccttctccgggacgccgaacgcggcggcgagctccgtcccgagcagggcgcggagcacggaggagccgccgacgaggaactgagggtggttccgccgcgccgacgtcgtgaacccgaagaacacgaacggcccgccccgcgacgccacctggcagaacgggaagtagcgcgggatgtagaacacgtcgccggcgcgcaccgtcgcgctcatcgccttcgacccgttcgggaacacgacctcgatgcagcccgtcccgctgagcacgacgccgtactccgtcgccctcgggttcacgtgcggcgccatcatcgatcc
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| CDS seq | atggcgtctcccttccactcctccttcccgctctccccgccatcctcctgccatggaggaggcgtcctccagtttgccactcgagccgcgactagtcctttcgcgtcctactgcagagcgccggcggcacgcgacggcggcgacgaccacgaccacgacgcggggatactgcaggcgctcgcgttcaacggcaacgggagcgtccatggcgttcttgatcctggtgtcgaggaggaggaggaggcgggtgacggcggcggcggcgggaggcggggcacgcggatccgggcgagggactgcgcgaagcggatcatgggactccccgtcgaggagcgggtcaaggtgctcgacctcctgcagcgcgacgacggggcgctcaccgtgtccgactacaacgacatcctctccgcgctcgccatggccggcgaccacgactccgcggtcgcgctcttccgggcgctccggcccaacggcgtcacgcccgacgcgcagtcctacgccaccgccgtgcagtgcctctgccggaagggcgcccccgacgaggccaaggaggcgctcgacgagatggtggcgcgcggcttccgccccaccgtcgccaccttctccgccgtcgtcggctgcctctgcaagcgcggacgcgtcaccagggccatggaggtgttcgacaccatgcgcgccgtcggctgcgagcccaccatccgcacctacaacagcctcatcggcgggctctgctacgtcgggcggctcgaggaggcgctggacctgctcaacaagctcaaggagtcgccgaagcagacgccggacatctacacgttcaccattgtcctcgacgggttctgcaaggtcgggcggacggacgaggccacgcccatcttccacgacgccgtcAGGgatggcctctcgccgacgatattcacctacaacgccctgctcaacggccactgcaaggaagggaatccgctcaaggcgtacagcctgctcatggagatgtgcggcaacgccgcctgcccgccggacaggatcagcttcagcatcgtgctgcaggcgctgctgcgcgccggcgagacctccgcggcgtggcaggcgtacaagcggatggagcgcgccgggttcgaggccgacggccgcgccctggacacgctcgcgcggggcctgtgccgtcagtgcgcggcgaacgtcgcggcgctcgccgacgcgagggaggtgttcggcaagctggtggcgtccgggcacgagccggtgtcgtacacctactgcctgatggcgcaggcgctggcgcgcggcggcgaggtggacgcggccgtgtcgctcctgggtgagatggcgcgcaggggttacgcgctgcggaagcgcgcgtacaccgacgtcgtccgcgcgctgtgcgagcgtggccgggcgcgcgacgcgctgcgggtgctggcgctggtgatcgccagggacttcgtgcccggccggaacgcgttcgacgcgctgctcggcgagctcgcccggcaggggaggtggcccgacgcgatggccgtgtacgccgccgccgtgaagcgcggcgtcctcgtctccttgaagcggcatagcaaggaggccctgctggtgcaggagcagacggaaacgcgagaatcgtcggtgcaaccgtgcaactga
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| Protein seq | MASPFHSSFPLSPPSSCHGGGVLQFATRAATSPFASYCRAPAARDGGDDHDHDAGILQALAFNGNGSVHGVLDPGVEEEEEAGDGGGGGRRGTRIRARDCAKRIMGLPVEERVKVLDLLQRDDGALTVSDYNDILSALAMAGDHDSAVALFRALRPNGVTPDAQSYATAVQCLCRKGAPDEAKEALDEMVARGFRPTVATFSAVVGCLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLCYVGRLEEALDLLNKLKESPKQTPDIYTFTIVLDGFCKVGRTDEATPIFHDAVRDGLSPTIFTYNALLNGHCKEGNPLKAYSLLMEMCGNAACPPDRISFSIVLQALLRAGETSAAWQAYKRMERAGFEADGRALDTLARGLCRQCAANVAALADAREVFGKLVASGHEPVSYTYCLMAQALARGGEVDAAVSLLGEMARRGYALRKRAYTDVVRALCERGRARDALRVLALVIARDFVPGRNAFDALLGELARQGRWPDAMAVYAAAVKRGVLVSLKRHSKEALLVQEQTETRESSVQPCN |
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| Function | Pentatricopeptide repeat-containing protein At1g09900 [UniProtKB/Swiss-Prot:Q3EDF8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0016400 | OsNaBo_03g0016400.01 | Chr03 | 12705627 | 12708632 | + | NAM | ||
| CDS seq | atggcgtctcccttccactcctccttcccgctctccccgccatcctcctgccatggaggaggcgtcctccagtttgccactcgagccgcgactagtcctttcgcgtcctactgcagagcgccggcggcacgcgacggcggcgacgaccacgaccacgacgcggggatactgcaggcgctcgcgttcaacggcaacgggagcgtccatggcgttcttgatcctggtgtcgaggaggaggaggaggcgggtgacggcggcggcggcgggaggcggggcacgcggatccgggcgagggactgcgcgaagcggatcatgggactccccgtcgaggagcgggtcaaggtgctcgacctcctgcagcgcgacgacggggcgctcaccgtgtccgactacaacgacatcctctccgcgctcgccatggccggcgaccacgactccgcggtcgcgctcttccgggcgctccggcccaacggcgtcacgcccgacgcgcagtcctacgccaccgccgtgcagtgcctctgccggaagggcgcccccgacgaggccaaggaggcgctcgacgagatggtggcgcgcggcttccgccccaccgtcgccaccttctccgccgtcgtcggctgcctctgcaagcgcggacgcgtcaccagggccatggaggtgttcgacaccatgcgcgccgtcggctgcgagcccaccatccgcacctacaacagcctcatcggcgggctctgctacgtcgggcggctcgaggaggcgctggacctgctcaacaagctcaaggagtcgccgaagcagacgccggacatctacacgttcaccattgtcctcgacgggttctgcaaggtcgggcggacggacgaggccacgcccatcttccacgacgccgtcAGGgatggcctctcgccgacgatattcacctacaacgccctgctcaacggccactgcaaggaagggaatccgctcaaggcgtacagcctgctcatggagatgtgcggcaacgccgcctgcccgccggacaggatcagcttcagcatcgtgctgcaggcgctgctgcgcgccggcgagacctccgcggcgtggcaggcgtacaagcggatggagcgcgccgggttcgaggccgacggccgcgccctggacacgctcgcgcggggcctgtgccgtcagtgcgcggcgaacgtcgcggcgctcgccgacgcgagggaggtgttcggcaagctggtggcgtccgggcacgagccggtgtcgtacacctactgcctgatggcgcaggcgctggcgcgcggcggcgaggtggacgcggccgtgtcgctcctgggtgagatggcgcgcaggggttacgcgctgcggaagcgcgcgtacaccgacgtcgtccgcgcgctgtgcgagcgtggccgggcgcgcgacgcgctgcgggtgctggcgctggtgatcgccagggacttcgtgcccggccggaacgcgttcgacgcgctgctcggcgagctcgcccggcaggggaggtggcccgacgcgatggccgtgtacgccgccgccgtgaagcgcggcgtcctcgtctccttgaagcggcatagcaaggaggccctgctggtgcaggagcagacggaaacgcgagaatcgtcggtgcaaccgtgcaactga
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| Protein seq | MASPFHSSFPLSPPSSCHGGGVLQFATRAATSPFASYCRAPAARDGGDDHDHDAGILQALAFNGNGSVHGVLDPGVEEEEEAGDGGGGGRRGTRIRARDCAKRIMGLPVEERVKVLDLLQRDDGALTVSDYNDILSALAMAGDHDSAVALFRALRPNGVTPDAQSYATAVQCLCRKGAPDEAKEALDEMVARGFRPTVATFSAVVGCLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLCYVGRLEEALDLLNKLKESPKQTPDIYTFTIVLDGFCKVGRTDEATPIFHDAVRDGLSPTIFTYNALLNGHCKEGNPLKAYSLLMEMCGNAACPPDRISFSIVLQALLRAGETSAAWQAYKRMERAGFEADGRALDTLARGLCRQCAANVAALADAREVFGKLVASGHEPVSYTYCLMAQALARGGEVDAAVSLLGEMARRGYALRKRAYTDVVRALCERGRARDALRVLALVIARDFVPGRNAFDALLGELARQGRWPDAMAVYAAAVKRGVLVSLKRHSKEALLVQEQTETRESSVQPCN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.027647 | 0.0 | 0.652789 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0336000 | RBH | 1.540626 | 1.825303 | 0.259599 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g21780 | RBH | 1.013555 | 1.311850 | 0.050931 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0336000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0016870 | RBH | 0.310425 | 0.0 | 0.212180 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0016710 | RBH | 0.019355 | 0.0 | 0.105678 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0016730 | RBH | 0.349327 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0016730 | RBH | 0.147023 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0016510 | RBH | 3.496487 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0205600 | RBH | 4.6879845 | 0.085001 | 0.327709 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0016380 | RBH | 0.276543 | 0.053663 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0210200 | RBH | 3.891114 | 0.5091955 | 1.3843325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0016610 | RBH | 0.110239 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0016650 | RBH | 0.242394 | 1.005335 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0016680 | RBH | 6.071982 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0016570 | RBH | 0.431267 | 0.079075 | 0.228507 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0016480 | RBH | 0.371459 | 0.463923 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G016430 | RBH | 0.157360 | 0.0 | 0.118324 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0027890 | RBH | 0.0 | 10.704887 | 0.910579 |
