Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0014270 | OGI:03028860 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:10940347-10946168 | ||||||||
| Gene Symbol | OsP1, P1 | ||||||||||
| DNA seq | tcagcaggagtccgagaggagccagctcgcgaacgactcgagctcgtccgagctgcagcccatcgagtcgtttggctcgcccgcgtcttggacaaggccgcccctctgggccggatcgccccacaggtcggccgcgaagccgtcccagtccatgtcgagcaggtcgtccgcctgggccgcgacgtccagcggctcgagccccggtatcccggggccgtcgggcgccacaccgccgcacagaagggcctccatctcggcgaactcgctctcagcctcccagaggcccatctccatcgggtccagcgacgtcggcccagtggctgtctcctcgctgcacggcccgtccggcgtgccgccgccgccgccgctgctgccgttgttgggctggctgctcggctcctccgggtcgaccaccacgctgccgctccgcgcctcgtcgctctgcgcgcgccgcgggctcgactccggcaacggcgtgtcggcggcggcggtctccttgggcgggtcgtcctccgcgcgcttcttgtcgcccttccgcgactgcccggcggtccggccgccgcggcgcttcccggcggcctggagcttggtcacgtcgatggtcacggcggcctcgctgggggcggtgtacgtcctccggtacgtgtggatctgcctgctcaggtgcgagttccagtagttcttgatctcgttgtccgtcctccccgggaggtggctcgcgatcagggaccacctgtgcaagcaggcagacaaaccagatttttcacggttagctgttttgatctaagtatcacgcgatccatgatcattcatcacagcaaataggagtaggaacactagtattcgcatttactgcacgtctacacgtgacggcgatgccattgctactaggctcttcgtaataaagttttgtgtggggatactgttggtagtggcgcgccgcttaactgcgcagcgacccgtacatggacaccaggacgggcgatacgccgtggggcgacctggttcgtatgattgcggagcgcggaaagcaacggaaagttcagtagagaaattaagcgaggcccgcaggcaggcaggtgcaaaggccggcccgggggacctcacgggctggccggtttcgttcgctctcggctctcccaacaaaatctgcatttctgatttgtcaagttaaaagtcatgaggtctacgtgggacccgcaattaatcctggaggggcccacggacagcggcaggtgagccagatgtacatgattagccaattaaaaagggggcgccattagcgcgatgatgatctgcgtgagagggacatgccccctttaaagaggaaggagaaatatacacttggaaaaaaaaaaaaagcgcgtccaaagtgcaaaaacctcgcgagggtagcgtgacatggctgccgagacgggtcatgtgtcagcagttaagcctgacggcccagcgatcgttttcctgccatttatgtgtacccttgacagatcaaccggggctaattaatcttagccatggctccgatagctagctttttgatgctacccgtacgtacgccctgtccgcggaagtacgcatgcacggcacatacgcattgcatctctgcgttcgttttagccacaacgtgacatggccgaggtagacgccaacaacatgcacactccccacccatgccgcgagtccggccctcaaaaaacaaacggaaaattgattatactagcaaccgcatgcacagtatgttcagcaaataaatgctcggatcaactagtcatgtacgtgttggtatatattctattagaaactttacatatgtttacagtagtatagtacagctcctgtacgcgagcggcaggcaacggccgcatgctcgtcgtaagccacgcgaagcacgcgcatgcacaacaatatttgtcccacaaacggccggccgtgtgtgcgcaacgagacgtggaaggcccaggccatatacatatatagtccaaaagaccaaaactcttatgcatggttttaccgtacgtgtgtgttttgttggaagcagtagtcacgtgcgcccaaacacacgtactccctccgtttcacaacgtaagactttctagtattatccacatacatataaatgttaataaatctaaacacatacatatgtctatattcattaacatataaatgaatgtgagcaatactagaaagtcttacactatgaaacggaggaagtactagttactacatacttcctccgtcctaaaaaaaaaggcaaaccgtaggtttccgtgctaacgtttgactgtccgtcttatatggaaatttttcataattagtatttttattgttgttagatgataaaacatgattaatactttatacgtgacttatcTttttaattttttttataattttttcaaataagacagacggtcaaacgttgacacgaaaacccacgatttgattttttttttacggggggagtaaattaaagggccggttagctcgctagctagctagggcgtgtctcgtcatgagggggaaacgtacacttgtcatgatacgtagtactacagtacatgtgagtttggattatcgattgcatttgtcgtacgttggatccctccacccccgcaccgacgctcgcggcagacttgttcagatcaacttgcggacatgtgtggaatcgtctattgttaatgagcagttaatgcgttacacataaagtacttccccacttataaaaaaacaaatctaatctggacatagtctaggacttaatttttatgggatagaggaagtatgtcagtactacacgtaccatatttcactgatgcaattaaattggatagttcgtttgtcaagtcatgagaaactcctgtattgttttctttattcagtactgtacagcaataagctagcttacctgcaggaactagctactagctcgctccgaatgacgtgacaaaatcaagacggtagctagtttactattcataatataagactttctaacattatccatatacatatagatattaataaatttatacatacatatgtacatgtttagattcattaatatctaaatgaatatagacaatgctagaaagttttatattgtgaaacggatgaagtagtatatatgttattaagaaaggacaacttatcactagttcactattagatgtacgagcgacttctacggatagcagtacttcgatcttttatcacgggaaagcatccaaaccaaggattttcctcgtgcttcatctccttttgatagaagaaaaataaagcggacaatctggtcatgggaattatattatgggagtagagaatagaggagactactactggcgtctgtgtgggggcatatatataatgcaatcctatagttgtatgatctgatgcacagccatttagctaagaatctttagaaggtaggtcgatttggatttaacttgtcctacatgcacttgcgattgggttggtcccgaataatagtgaactcttatagcaagttgcaaattgatacatgtataaaataggtcattttctaacatatacttagttattactacttgctggcgaaaacaccattatttgaacaactcatgtcacataactatggccctatttagtttcaaagttttttttcaaacttctaactttccatcacatcaaatctttaatacacacagaatttttctatcacatcgtaccaatttcaacaaaactttcaaacttcagtgtgaactaaacacaacctatagacgtacgaagtagtactgtagaaaggacaggtccttaagcttcttgtaagtgtcatggtataatattttctcaaaaattagtgaagttaatttgaaaatcatatagtgaaaacttaattatattgctttcactactaatatttaaagaggctactacaacacaaataatacttagggtatatcaaactggtgcaaatataaataagccatgaaaataTttttggaccaactgtatatcgttttacgaaagaactcgtaattaattactagtaaactctacaagacgaccacactacttagggttaagcgtggaatgtgtgtaacactcgatgtgttgctatcctgcctagctactactcgtagaaattaactgcatgcataaactgtagacgcgccgggctcttccgccacacgcttgggtgacacatgtgacagtgaccaaattgattaattaattgaccggcaaaaactgtgtgcactttcatggcgtataaacacgtaagccaaggcatgcattgcaggtaccagtataaaaatacctgagactacctcgaagttaagactgtttggtacaacttcaacttctaaatttaactataggagttgggtctggagtgtagttataaagctgcctaaacccagctccacaactctagttcattttgtgagagagctccacccagctctactcctatttctggtggagctgaaactgtttggctgagctccagttccaggaggggtggagctgaagctggagttgtgccaaacatgccctaaaagggattcgggaccatgcacgcgtgcatatgcagctggagtatgtatatttttccagtgtcttttactactactactggtgtctactgtatacaattgctctgcacacaggggctcagtagagtagccaacacatgcacactactgaatactgttactgtatgtgcctatatgtggtgacagtaatgtctcaactctcaaccgaaggactgacggagacagaactcttaaagtgctcatataggagtaaaataaggatagttaattaacgacaaagcttttataggcttgtcaaatgcgatgtcttcgttggaagttattgttaaaactagctaccgcgcggtctcatgtctctagagggcacacgtacgtgacaactAaaatagtagcccgtcgtacgcttgagtttgcactattagtgtaacgtacagctagcctatgctgtcagtggaacccatttcttttaattacgttgaaagtacgtgggagtgatttctgtaggagtatagtgcgtgtgtactatgatcagtgtaggaatagtacatcgcctttacttgatctcggtcggacgcttctcaggcactccacactgatattggcatgccgctgcagaacaggtcggagaggatcgagagaaacaaagggaaaagaaaagcagagaaggaaaggaaggagagggatggatcgatcagtgtacctgttcccgagggtagcgtggagcttgatgatgacgtcctcttcctgattggagatgttcccccgcttcacgccggctctcaggtagttgatccaccgcagcctgcagctctttccgcaccgcaacagccctgcatatgtccggacggcacgacacgatgaatcaaaccaacgcgtcaagtgacagtcggagcttgttagtagctatggctatagtactagttctcctatagctgggaagcaagagtgcgcttttttattattatttttgctagatttagggctttaattagcaagctgtttaatcaaccgcagactttgtgatgaccagcagcagggaatgaataaaggacgatatactgtaataaagatcgatacgcagtgcagatcatgtgtgtgatgaaattagctagttccggacttccggcggtggcgggcgggcgtagagcacgcacctgcattcttgggcagcgagcgccaggatccctcgccgtgcttggcaatgtagccggcgagcttctcgtcctcctccgtcgtccacctcccgcgcttcagcccaaccttctcgcagcacggcgccctccccat
More
|
||||||||||
| CDS seq | atggggagggcgccgtgctgcgagaaggttgggctgaagcgcgggaggtggacgacggaggaggacgagaagctcgccggctacattgccaagcacggcgagggatcctggcgctcgctgcccaagaatgcagggctgttgcggtgcggaaagagctgcaggctgcggtggatcaactacctgagagccggcgtgaagcgggggaacatctccaatcaggaagaggacgtcatcatcaagctccacgctaccctcgggaacaggtggtccctgatcgcgagccacctcccggggaggacggacaacgagatcaagaactactggaactcgcacctgagcaggcagatccacacgtaccggaggacgtacaccgcccccagcgaggccgccgtgaccatcgacgtgaccaagctccaggccgccgggaagcgccgcggcggccggaccgccgggcagtcgcggaagggcgacaagaagcgcgcggaggacgacccgcccaaggagaccgccgccgccgacacgccgttgccggagtcgagcccgcggcgcgcgcagagcgacgaggcgcggagcggcagcgtggtggtcgacccggaggagccgagcagccagcccaacaacggcagcagcggcggcggcggcggcacgccggacgggccgtgcagcgaggagacagccactgggccgacgtcgctggacccgatggagatgggcctctgggaggctgagagcgagttcgccgagatggaggcccttctgtgcggcggtgtggcgcccgacggccccgggataccggggctcgagccgctggacgtcgcggcccaggcggacgacctgctcgacatggactgggacggcttcgcggccgacctgtggggcgatccggcccagaggggcggccttgtccaagacgcgggcgagccaaacgactcgatgggctgcagctcggacgagctcgagtcgttcgcgagctggctcctctcggactcctgctga
More
|
||||||||||
| Protein seq | MGRAPCCEKVGLKRGRWTTEEDEKLAGYIAKHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRAGVKRGNISNQEEDVIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTYRRTYTAPSEAAVTIDVTKLQAAGKRRGGRTAGQSRKGDKKRAEDDPPKETAAADTPLPESSPRRAQSDEARSGSVVVDPEEPSSQPNNGSSGGGGGTPDGPCSEETATGPTSLDPMEMGLWEAESEFAEMEALLCGGVAPDGPGIPGLEPLDVAAQADDLLDMDWDGFAADLWGDPAQRGGLVQDAGEPNDSMGCSSDELESFASWLLSDSC |
||||||||||
| Function | Myb-related protein P [UniProtKB/Swiss-Prot:P27898] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0014270 | OsNaBo_03g0014270.01 | Chr03 | 10940347 | 10946168 | - | NAM | ||
| CDS seq | atggggagggcgccgtgctgcgagaaggttgggctgaagcgcgggaggtggacgacggaggaggacgagaagctcgccggctacattgccaagcacggcgagggatcctggcgctcgctgcccaagaatgcagggctgttgcggtgcggaaagagctgcaggctgcggtggatcaactacctgagagccggcgtgaagcgggggaacatctccaatcaggaagaggacgtcatcatcaagctccacgctaccctcgggaacaggtggtccctgatcgcgagccacctcccggggaggacggacaacgagatcaagaactactggaactcgcacctgagcaggcagatccacacgtaccggaggacgtacaccgcccccagcgaggccgccgtgaccatcgacgtgaccaagctccaggccgccgggaagcgccgcggcggccggaccgccgggcagtcgcggaagggcgacaagaagcgcgcggaggacgacccgcccaaggagaccgccgccgccgacacgccgttgccggagtcgagcccgcggcgcgcgcagagcgacgaggcgcggagcggcagcgtggtggtcgacccggaggagccgagcagccagcccaacaacggcagcagcggcggcggcggcggcacgccggacgggccgtgcagcgaggagacagccactgggccgacgtcgctggacccgatggagatgggcctctgggaggctgagagcgagttcgccgagatggaggcccttctgtgcggcggtgtggcgcccgacggccccgggataccggggctcgagccgctggacgtcgcggcccaggcggacgacctgctcgacatggactgggacggcttcgcggccgacctgtggggcgatccggcccagaggggcggccttgtccaagacgcgggcgagccaaacgactcgatgggctgcagctcggacgagctcgagtcgttcgcgagctggctcctctcggactcctgctga
More
|
|||||||
| Protein seq | MGRAPCCEKVGLKRGRWTTEEDEKLAGYIAKHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRAGVKRGNISNQEEDVIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTYRRTYTAPSEAAVTIDVTKLQAAGKRRGGRTAGQSRKGDKKRAEDDPPKETAAADTPLPESSPRRAQSDEARSGSVVVDPEEPSSQPNNGSSGGGGGTPDGPCSEETATGPTSLDPMEMGLWEAESEFAEMEALLCGGVAPDGPGIPGLEPLDVAAQADDLLDMDWDGFAADLWGDPAQRGGLVQDAGEPNDSMGCSSDELESFASWLLSDSC
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0296000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g19120 | RBH | 0.000000 | 0.101815 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0303500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0014790 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0014620 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0014600 | RBH | 0.377615 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0014580 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0014410 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0180900 | RBH | 1.294182 | 0.0872775 | 0.0422495 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0014320 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0183000 | RBH | 4.0158515 | 0 | 0.2086635 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0014570 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0014570 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0014630 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0014490 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0014450 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G014380 | RBH | 0.0 | 0.0 | 0.356268 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0013510 | RBH | 0.000000 | 0.0 | 0.000000 |
