Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0014140 | OGI:03028620 | 14/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:10837353-10842741 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acgccgtattcgctttgccacttgcggcggaagcgccactctctcctctcctctcctccctgccccccacccatcccccgtgccccacgcgcccacgttggcggtgcggttgatccggcaacagcaggcgcctcctcctcctccgcccccaaccaccacccccacccccgcggcgcccatgggtgtccgttcctgagcacaccccacgcttccgctccgcgcatctccgtgggtgggttgggcatataccttgcttcagtcgctttcccatctcttgcttcgtcctgccttcttctttcttccgtgatcccggaacccggtggtcgccgccgcctcggtggatcttgctcggccctgcggggtgctcaggtgcgtcatcccttcgctgccggtgggcattggcttgtgttgctttggttagtctctgttcaggcattccgtcgagcacctgtgctgcgttggggcattggaggccttcttgtttgtttgatctgtaattagctctggtggtgctcctttttttttttcgtgcattttgattgttgtgtgtatcttcccttttcctagttttagcggtcctgaaaaattctggggtttttttttctgtgtttctttcagcatgtccccttcatagcagtgtacgctggtcatgatctaggtccggggttggctacttgatgtgtgaaccgtgaataagtttggtaatcgagtgttgtgagttgtgatttggaatgggtttgcaatcatcttgtgtgaaccaagcatgttcactactcaaagcagggtgaattttcagcatgatgtttgaatttcatcttatccatgttgcctggttatcgttgtctcgttgatggtattctgtgaattacattaggttgcagaaaatgtttatacacttacctgcctggtgaaattgcctattttgtgtctgcattgtagtgatcgcatttgagaagcttatttgcacaatgtcctacacaaactgtttgaggagatatccagttagagccatctttccatacactaatgccatcctccgagcttctttggagaaaggatctccggaaaagtcactgacagattacaacagtatgcttcgtttcactgctttctgccctgattacagaacatatgtgctccttctcaaggcttgtgcaaaatgttcaaatatctatgctatcatggaaatccattcccaactcgttaaacttggcctgctatctaatcaacgtatagtaactcatctcttcaaattatacattgatcatggtcgcgtgatggaagcttgcaaactattttggctaatgctggagtggagtgccgaacccttttatggaaatttgatgctcatgggattcttgaagtgtggacagatagacaaggcatatcagattttcaagaggatgcctgtcaaggatttggtctcatggaattcaatgattgcaggtacagcaaggaactcgtgcctgaaagatgcaatgaatattttcagcaagttggtcaattcaggtctagtgcctgatggcttctcattctcctcagtcctatcagcttgtgctcaagctggtgcccgttgttatggtatgtgggttcatcaactaatggctgaactgggattggaaatgaaccatattttaagttcatcacttgttgatatgtacgcaaaatgtggaagaattgacgtggcaattgggatattcaagacaattaagagaaaccatgtctctgtatggaacacaatgattggtggcctggcagcacatggtcttggatctgatgcggtgatgttcttccgtgagatggaaagtgaaggtcttgttcctgatggggttacatttgttgcactcttgacagcatgcagccattccggcatggttgaagaggctcgtcaatactttgaagcaatgactacaaagtattctatcactccgaggattgaacattatggtgcaatggtggatactttgtcacgagctgggctactggatgaagcatatgacttggtaaagacaatgaatgtgaaacctgatgctgtgatatggagggcattactcagtgcttgttgcaggtaccggcaaactaaactaggtgagatcaccgtcaaggagatagcgttccagggcagtggtggctatacccttctttcaaacatctactcatctgcgaatagatgggaagattcagaggaagtatggaaagagaggaagaaaaagggaattaggaagagcaagggcttgagttgggttgagttagggaggagcacccatgaatttaaagctggtgaccgatctcatcctgacactgatggcatttataaagtgttgcatcggttatcaaacaaggccaagagtgaaggatatattccattgactgaactagtgtccaaagatgtctctgaggaggaaagagaagaaaaccttactgtccacagtgagaagctagcggtggcatatagtatccttaagacaatgccaaggacagagataatggtgtcaaagaatctgcagacttgcagtgattgtcatgaatggatgaagatagtctcgaaggtactttgtcgtgttataattatgagggatagagttcgatttcaccgttttgaaggtggatgctgctcctgtaaagattattggtaattcctgttttggaggcagatgctgctcctgtaaagattgttggtcagtactgtttggagaactacagaattgatttgtttagcatcatatcaacagttctgacaggaggtacaagtagaaccagtggatataactactttcccttgtggagtcatgggtggtctatgtgactatgccaatatatgacccctataatacatggtattatcattttgtctgcacagcaggtgacatgaaacaatggaaatatgggtaaaccagcgcacacatacatgaaattgtgtactatacacgcacccaccaagtatgtacaagtatcctacagacttgaagcctgtcacccacaatagaaagatcaaaagattatcttctggatttttttgtattttctaattgactttgatgctcttatggctttccatgtgtgtcatggaaaatttttactggagtatggcattttctgcacttctgccatcttcgcacttttttggttgctttcgtggagttgatgtgtcacaggctcacagcatatgatggctgctttcttttctgtttggttgtattcttgtacatctctgctccgactagtttaatttttccaactaaagttattctttgtttattgtttcaggattaacagtgaggggacattctgtattcagtaatatcaagtttctacaaataaataggtgtaggaatacctttgatgccccatttacactgtttgtgcaatgtctttatattctattttctgtgggaacttccatcaactaaggaattcaataggaagctgttctagtaccagtttgcttaaatgcggattaatctatagaactgtacttcagaacagaggaaataaaactcgaccaatcagtacgacaatactagcaagaagtacaagaaaagaaagtaagcagtcattcaaaaccagccgtcatttgcatagtgaatcggttgagtcatcgattgaagtgctcaaacagtcagatcttgagcatcttaaatcacttcaatgctacaatattccacaaaaggtttccggagtgaagaccgattggcctgcaactatccttgtttttgatattgaaactacaggcttctcacgccgctatgaaagaatcattgagtttgctgttcgggatcttatgggaggaaagaatagcactatccagacactcataaatcctgagagagagataaaaaatgcatatgttcatggtattagcagcagcatggtctgcaaacctgatataccaaggtatgacattttcaacagatgctcagttgatattgttaaattatttcttcttatgcaaactgtacttttcatgcaataaggaaagtatggaagtaaaactgtaaaagggcatccgagagaacagtggactagttgcaaactagatattgtatctttccttgcttgcaaccattgacctgccatttttttattgtgatgctgtcttctgaaaaaaaggttccctcttctagatattccgaaaattcggtgctagaagaaatgtgaactgatatcaaaattccatttcctttttctgggataggtgcctcttttaatcatctccctttagtataagcttcagtcattgagcactaggatgccaaaacttgattacgttggactttttatgttctgtaataattatagttgttcttttttctggctatgcagatttcgggagTttatccctattctattacagtatgttttgagtcgtcaaatggctgataaaccagttctgtgggtcgctcataatggacgtagctttgatgtaccatttctcatgtatgaattccaacggagtaaaatagagatgcctggtgactggctatttgtagatacacttccaattgcaaggcaattgattgattctgatggtacgttcttttgtcaagtgttctgtttacttgcatgaacttaacttttctgactaatttgcactgctagagattagaactatatacagttcaccctgatattacagtgtaactagcaaaacaaactagttttgctattcaacttccaacttttcataagcattcatgtgattttaattgttatgttgaatcctgaggcaaaaataaagttaagttagcaatattaggtcttctctaaagaaagttcagtttttatcactggattctttttctttttttcttttttactgcaagagaaagaaggcataatatgggagcaaagcaggtgactgaaagtaaaaccttcctgttattttatttgcaggggaaaaactgaagtctgtatctttagacaatctgagggagcactacaagatcccattggcagggagcgctcatcgagcaatgcaggatgtgatcaccctctgctatgttctccagaagttgaccttcgagctgaaactaactgttcctcagctccttgagaggtcattccgggtttccgatctttcaacccctcgccctggaaaatgactgcacctgcctcgccgaaaggatcacacagaaacctggattgtttcattgtccttgtatccagtgctgttgtttcagatcccagctcatatgttgttccgacaacagaataaggcaggcctgatcgttaccgtgatattaatcatttttagtttagtactgatacttgttgccccttgaaacattgattagacgtacatttattcaaagttgtaaagaccaaaacatgtcctggtttccaacctggaagaaatgaaacgttcttgactatctgtagtcactgtggt
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| CDS seq | atggaagcttgcaaactattttggctaatgctggagtggagtgccgaacccttttatggaaatttgatgctcatgggattcttgaagtgtggacagatagacaaggcatatcagattttcaagaggatgcctgtcaaggatttggtctcatggaattcaatgattgcaggtacagcaaggaactcgtgcctgaaagatgcaatgaatattttcagcaagttggtcaattcaggtctagtgcctgatggcttctcattctcctcagtcctatcagcttgtgctcaagctggtgcccgttgttatggtatgtgggttcatcaactaatggctgaactgggattggaaatgaaccatattttaagttcatcacttgttgatatgtacgcaaaatgtggaagaattgacgtggcaattgggatattcaagacaattaagagaaaccatgtctctgtatggaacacaatgattggtggcctggcagcacatggtcttggatctgatgcggtgatgttcttccgtgagatggaaagtgaaggtcttgttcctgatggggttacatttgttgcactcttgacagcatgcagccattccggcatggttgaagaggctcgtcaatactttgaagcaatgactacaaagtattctatcactccgaggattgaacattatggtgcaatggtggatactttgtcacgagctgggctactggatgaagcatatgacttggtaaagacaatgaatgtgaaacctgatgctgtgatatggagggcattactcagtgcttgttgcaggtaccggcaaactaaactaggtgagatcaccgtcaaggagatagcgttccagggcagtggtggctatacccttctttcaaacatctactcatctgcgaatagatgggaagattcagaggaagtatggaaagagaggaagaaaaagggaattaggaagagcaagggcttgagttgggttgagttagggaggagcacccatgaatttaaagctggtgaccgatctcatcctgacactgatggcatttataaagtgttgcatcggttatcaaacaaggccaagagtgaaggatatattccattgactgaactagtgtccaaagatgtctctgaggaggaaagagaagaaaaccttactgtccacaatgctgctcctgtaaagattgttggtcagtactgtttggagaactacagaattgatttgtttagcatcatatcaacagttctgacaggaggcttctcacgccgctatgaaagaatcattgagtttgctgttcgggatcttatgggaggaaagaatagcactatccagacactcataaatcctgagagagagataaaaaatgcatatgttcatggtattagcagcagcatggtctgcaaacctgatataccaagatttcgggagTttatccctattctattacagtatgttttgagtcgtcaaatggctgataaaccagttctgtgggtcgctcataatggacgtagctttgatgtaccatttctcatgtatgaattccaacggagtaaaatagagatgcctggtgactggctatttgtagatacacttccaattgcaaggcaattgattgattctgatggggaaaaactgaagtctgtatctttagacaatctgagggagcactacaagatcccattggcagggagcgctcatcgagcaatgcaggatgtgatcaccctctgctatgttctccagaagttgaccttcgagctgaaactaactgttcctcagctccttgagaggtcattccgggtttccgatctttcaacccctcgccctggaaaatga
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| Protein seq | MEACKLFWLMLEWSAEPFYGNLMLMGFLKCGQIDKAYQIFKRMPVKDLVSWNSMIAGTARNSCLKDAMNIFSKLVNSGLVPDGFSFSSVLSACAQAGARCYGMWVHQLMAELGLEMNHILSSSLVDMYAKCGRIDVAIGIFKTIKRNHVSVWNTMIGGLAAHGLGSDAVMFFREMESEGLVPDGVTFVALLTACSHSGMVEEARQYFEAMTTKYSITPRIEHYGAMVDTLSRAGLLDEAYDLVKTMNVKPDAVIWRALLSACCRYRQTKLGEITVKEIAFQGSGGYTLLSNIYSSANRWEDSEEVWKERKKKGIRKSKGLSWVELGRSTHEFKAGDRSHPDTDGIYKVLHRLSNKAKSEGYIPLTELVSKDVSEEEREENLTVHNAAPVKIVGQYCLENYRIDLFSIISTVLTGGFSRRYERIIEFAVRDLMGGKNSTIQTLINPEREIKNAYVHGISSSMVCKPDIPRFREFIPILLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGDWLFVDTLPIARQLIDSDGEKLKSVSLDNLREHYKIPLAGSAHRAMQDVITLCYVLQKLTFELKLTVPQLLERSFRVSDLSTPRPGK |
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| Function | Pentatricopeptide repeat-containing protein At5g50990 [UniProtKB/Swiss-Prot:Q9FI49] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0014140 | OsNaBo_03g0014140.01 | Chr03 | 10838630 | 10842741 | + | NAM | ||
| CDS seq | atggaagcttgcaaactattttggctaatgctggagtggagtgccgaacccttttatggaaatttgatgctcatgggattcttgaagtgtggacagatagacaaggcatatcagattttcaagaggatgcctgtcaaggatttggtctcatggaattcaatgattgcaggtacagcaaggaactcgtgcctgaaagatgcaatgaatattttcagcaagttggtcaattcaggtctagtgcctgatggcttctcattctcctcagtcctatcagcttgtgctcaagctggtgcccgttgttatggtatgtgggttcatcaactaatggctgaactgggattggaaatgaaccatattttaagttcatcacttgttgatatgtacgcaaaatgtggaagaattgacgtggcaattgggatattcaagacaattaagagaaaccatgtctctgtatggaacacaatgattggtggcctggcagcacatggtcttggatctgatgcggtgatgttcttccgtgagatggaaagtgaaggtcttgttcctgatggggttacatttgttgcactcttgacagcatgcagccattccggcatggttgaagaggctcgtcaatactttgaagcaatgactacaaagtattctatcactccgaggattgaacattatggtgcaatggtggatactttgtcacgagctgggctactggatgaagcatatgacttggtaaagacaatgaatgtgaaacctgatgctgtgatatggagggcattactcagtgcttgttgcaggtaccggcaaactaaactaggtgagatcaccgtcaaggagatagcgttccagggcagtggtggctatacccttctttcaaacatctactcatctgcgaatagatgggaagattcagaggaagtatggaaagagaggaagaaaaagggaattaggaagagcaagggcttgagttgggttgagttagggaggagcacccatgaatttaaagctggtgaccgatctcatcctgacactgatggcatttataaagtgttgcatcggttatcaaacaaggccaagagtgaaggatatattccattgactgaactagtgtccaaagatgtctctgaggaggaaagagaagaaaaccttactgtccacaatgctgctcctgtaaagattgttggtcagtactgtttggagaactacagaattgatttgtttagcatcatatcaacagttctgacaggaggcttctcacgccgctatgaaagaatcattgagtttgctgttcgggatcttatgggaggaaagaatagcactatccagacactcataaatcctgagagagagataaaaaatgcatatgttcatggtattagcagcagcatggtctgcaaacctgatataccaagatttcgggagTttatccctattctattacagtatgttttgagtcgtcaaatggctgataaaccagttctgtgggtcgctcataatggacgtagctttgatgtaccatttctcatgtatgaattccaacggagtaaaatagagatgcctggtgactggctatttgtagatacacttccaattgcaaggcaattgattgattctgatggggaaaaactgaagtctgtatctttagacaatctgagggagcactacaagatcccattggcagggagcgctcatcgagcaatgcaggatgtgatcaccctctgctatgttctccagaagttgaccttcgagctgaaactaactgttcctcagctccttgagaggtcattccgggtttccgatctttcaacccctcgccctggaaaatga
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| Protein seq | MEACKLFWLMLEWSAEPFYGNLMLMGFLKCGQIDKAYQIFKRMPVKDLVSWNSMIAGTARNSCLKDAMNIFSKLVNSGLVPDGFSFSSVLSACAQAGARCYGMWVHQLMAELGLEMNHILSSSLVDMYAKCGRIDVAIGIFKTIKRNHVSVWNTMIGGLAAHGLGSDAVMFFREMESEGLVPDGVTFVALLTACSHSGMVEEARQYFEAMTTKYSITPRIEHYGAMVDTLSRAGLLDEAYDLVKTMNVKPDAVIWRALLSACCRYRQTKLGEITVKEIAFQGSGGYTLLSNIYSSANRWEDSEEVWKERKKKGIRKSKGLSWVELGRSTHEFKAGDRSHPDTDGIYKVLHRLSNKAKSEGYIPLTELVSKDVSEEEREENLTVHNAAPVKIVGQYCLENYRIDLFSIISTVLTGGFSRRYERIIEFAVRDLMGGKNSTIQTLINPEREIKNAYVHGISSSMVCKPDIPRFREFIPILLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGDWLFVDTLPIARQLIDSDGEKLKSVSLDNLREHYKIPLAGSAHRAMQDVITLCYVLQKLTFELKLTVPQLLERSFRVSDLSTPRPGK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0014140 | OsNaBo_03g0014140.02 | Chr03 | 10837353 | 10842741 | + | IsoSeq | ||
| CDS seq | cgccgtattcgctttgccacttgcggcggaagcgccactctctcctctcctctcctccctgccccccacccatcccccgtgccccacgcgcccacgttggcggtgcggttgatccggcaacagcaggcgcctcctcctcctccgcccccaaccaccacccccacccccgcggcgcccatgggtgtccgt |
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| Protein seq | RRIRFATCGGSATLSSPLLPAPHPSPVPHAPTLAVRLIRQQQAPPPPPPPTTTPTPAAPMGVR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.570503 | 7.638341 | 4.194615 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0301400 | RBH | 0.433567 | 1.255445 | 5.123667 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g18940 | RBH | 0.293038 | 0.831996 | 1.313197 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0301400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0014650 | RBH | 0.292760 | 0.000000 | 4.899402 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0014480 | RBH | 0.000000 | 2.858629 | 2.934162 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0014490 | SBH | 0.201472 | 1.309905 | 7.812381 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0014470 | SBH | 0.025588 | 0.484922 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0014270 | RBH | 2.460248 | 7.300531 | 9.311498 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0179100 | RBH | 1.8822705 | 2.455785 | 2.646579 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0014180 | RBH | 0.172256 | 0.332789 | 1.761006 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0181300 | RBH | 1.891206 | 2.1971315 | 4.505227 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0014430 | RBH | 0.037267 | 0.327779 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0014430 | RBH | 0.075846 | 6.012826 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0014490 | RBH | 1.055906 | 5.660472 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0014340 | RBH | 0.408690 | 0.535996 | 0.996894 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0014310 | RBH | 0.262974 | 0.620754 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G014250 | RBH | 0.088576 | 3.658046 | 0.710826 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
